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Characteristics of Gut Microbiota in Patients with Severe Pneumonia and its Potential Clinical Relevance Cover

Characteristics of Gut Microbiota in Patients with Severe Pneumonia and its Potential Clinical Relevance

Open Access
|Jun 2026

Figures & Tables

graphic/j_pjm-2026-001_ufig_001.jpg
Table I

Comparison of clinical data between the improved discharge group and the non-improved discharge group.

ItemImproved discharge group (n = 45)Non-improved discharge group (n = 51)t/χ2p
Gender0.4350.510
Male2835
Female1716
Age64.577 ± 15.87871.804 ± 15.277–2.2700.025
Total length of hospital stay14.533 ± 4.2837.686 ± 6.3516.108< 0.001
APACHE II score24.133 ± 5.88026.520 ± 7.393–1.7280.087
Past history
Hypertension0.9960.318
Yes2129
No2422
Diabetes2.4380.118
Yes138
No3243
Coronary disease0.2690.604
Yes710
No3841
Personal history
Smoke0.0410.840
Yes1518
No3033
Excessive drinking1.2260.268
Yes1219
No3332
Test results
WBC (×109/l)14.706 ± 6.29314.020 ± 9.5450.4020.689
N (%)85.491 ± 9.47282.269 ± 17.0701.1000.274
HGB (g/l)98.591 ± 40.88599.522 ± 35.780–0.1170.907
PLT (×109/l)224.767 ± 116.618201.880 ± 133.0200.8750.384
CRP (mg/l)61.623 ± 55.878128.030 ± 75.944–4.293< 0.001
INR1.196 ± 0.4361.241 ± 0.442–0.4930.623
Alveolar lavage fluid
Gram-Negative bacillus0.1780.673
(+)2425
(–)2126
Table II

Assignment method.

VariableAssignment
Dependent variable
Whether the patient was discharged after improvementNo = 0, Yes = 1
Independent variable
GenderFemale = 0, Male = 1
AgeSubstitute the original value
Total length of staySubstitute the original value
APACHE II scoreSubstitute the original value
HypertensionNo = 0, Yes = 1
DiabetesNo = 0, Yes = 1
Coronary diseaseNo = 0, Yes = 1
SmokeNo = 0, Yes = 1
Excessive drinkingNo = 0, Yes = 1
WBC (×109/l)Substitute the original value
HGB (g/l)Substitute the original value
PLT (×109/l)Substitute the original value
CRP (mg/l)Substitute the original value
Gram-Negative bacillus“–” = 0, “+” = 1
Table III

Logistics regression analysis of clinical data of severe pneumonia patients.

Correlative factorRelevant parameterSingle factor Logistics analysisMulti-factor Logistics analysis
Improved discharge groupNon-improved discharge groupOR95%CIpOR95%CIp
Gender0.7530.321–1.7530.510
Male2835
Female1716
Age0.9700.942–0.9960.0310.9630.931–0.9940.024
≤ 55107
> 553544
Total length of hospital stay1.2551.147–1.398< 0.0011.2621.151–1.410< 0.001
≤ 142544
> 14207
APACHE II score24.133 ± 5.88026.520 ± 7.3930.9470.886–1.0070.091
Past history
Hypertension0.6640.294–1.4830.319
Yes2129
No2422
Diabetes2.1840.822–6.1120.123
Yes138
No3243
Coronary disease0.7550.251–2.1660.604
Yes710
No3841
Personal history
Smoke0.9170.391–2.1340.840
Yes1518
No3033
Excessive drinking0.6120.251–1.4510.270
Yes1219
No3332
Test results
WBC (×109/l)14.706 ± 6.29314.020 ± 9.5451.0100.961–1.0640.685
HGB (g/.)98.591 ± 40.88599.522 ± 35.7800.9990.989–1.0100.906
PLT (×109/l)224.767 ± 116.618201.880 ± 133.0201.0010.998–1.0050.381
CRP (mg/l)61.623 ± 55.878128.030 ± 75.9440.9900.978–1.0010.074
Alveolar lavage fluid
Gram-negative bacillus1.1890.533–2.6660.673
(+)2425
(−)2126
Fig. 1.

Microbial diversity analysis of fecal samples. Analysis of α diversity (A–F) and β diversity (G–H) of intestinal microbiota in patients with severe pneumonia (SP) and normal controls (NC).

Fig. 2.

The microbial composition at different classification levels in fecal samples. Stacked plot of the relative abundances of the top 10 intestinal microorganisms at the phylum (A), class (B), order (C), family (D), genus (E), and species (F) levels. Cladogram (G) and LDA bar plot (H) of microorganisms associated with fecal samples from patients with severe pneumonia and normal controls.

Fig. 3.

Machine-learning algorithms screen for signature microbiota. LASSO analysis (A–B), RF analysis (C–D), and SVM analysis (E–F) were used to screen the characteristic microbiota of patients with severe pneumonia at the genus level.

Fig. 4.

Evaluation of intestinal characteristic microbial markers in patients with severe pneumonia. The Venn diagram shows the selection of nine microbial markers by three machine learning methods (A). The ROC curve of the combined model of nine microbial markers (B). Changes in the relative abundance of nine microbial markers in patients with severe pneumonia (C–K).

DOI: https://doi.org/10.33073/pjm-2026-001 | Journal eISSN: 2544-4646 | Journal ISSN: 1733-1331
Language: English
Page range: 109 - 122
Submitted on: Jun 5, 2025
Accepted on: Sep 5, 2025
Published on: Jun 30, 2026
Published by: Polish Society of Microbiologists
In partnership with: Paradigm Publishing Services
Publication frequency: 4 issues per year

© 2026 Fangchao Zhong, Maosen Huang, Xiaoxia Wei, Lihua Fu, Linhai Yan, published by Polish Society of Microbiologists
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.