References
- Abdalrahim S, Zohri ANA, Khider M, Kamal El-Dean AM, Abulreesh HH, Ahmad I, Elbanna K. Phenotypic and genotypic characterization of exopolysaccharide producing bacteria isolated from fermented fruits, vegetables and dairy products. J Pure Appl Microbiol. 2019 Sep;13(3):1349–1362. https://doi.org/10.22207/jpam.13.3.06
- Abdel-Fattah YR, Saeed HM, Gohar YM, El-Baz MA. Improved production of Pseudomonas aeruginosa uricase by optimization of process parameters through statistical experimental designs. Process Biochem. 2005 Apr;40(5):1707–1714. https://doi.org/10.1016/j.procbio.2004.06.048
- Abo-Amer AE, El-Shanshoury AERR, Alzahrani OM. Isolation and molecular characterization of heavy metal-resistant Alcaligenes faecalis from sewage wastewater and synthesis of silver nanoparticles. Geomicrobiol J. 2015 Aug;32(9):836–845. https://doi.org/10.1080/01490451.2015.1010754
- Adámek V, Králová B, Süchová M, Valentová O, Demnerová K. Purification of microbial uricase. J Chromatogr. 1989 Dec;497: 268–275. https://doi.org/10.1016/0378-4347(89)80028-3
- Aly M, Tork S, Al-Garni S, Allam R. Production and characterization of uricase from Streptomyces exfoliatus UR10 isolated from farm wastes. Turk J Biol. 2013;37(5):520–529. https://doi.org/10.3906/biy-1206-3
- Amirthanathan A, Subramaniyan V. Studies on uricase production by marine Bacillus cereus and its optimum conditions. Int J Med. Biosci. 2012;1:5–12.
- Amirthanathan A, Vijayakumar S. Purification and optimization of uricase enzyme produced by Pseudomonas aeruginosa. J Exp Sci. 2011;2(11):5–8.
- Atalla MM, Hamed ER, Ahmed NE, Farag MM. Purification and characterization of uricase enzyme produced by Gliomastix gueg. Gate2Biotech. 2010;2(11):1–13.
- Atty FK, Joseph J. Isolation and identification of uric acid degrading bacteria, optimization of uricase production and purification of uricase enzyme. Int J Ad. Res. 2016 Dec;4(12):2732–2742. https://doi.org/10.21474/ijar01/2702
- Azab EA, Ali MM, Fareed MF. Studies on uricase induction in certain bacteria. Egypt J Biol. 2005;7:44–54.
- Bakhtiar S, Andersson MM, Gessesse A, Mattiasson B, Hatti-Kaul R. Stability characteristics of a calcium-independent alkaline protease from Nesterenkonia sp. Enzyme Microb Technol. 2003 Apr; 32(5):525–531. https://doi.org/10.1016/S0141-0229(02)00336-8
- Bakhtiari S, Toosi P, Samadi S, Bakhshi M. Assessment of uric acid level in the saliva of patients with oral lichen planus. Med Princ Pract. 2017;26(1):57–60. https://doi.org/10.1159/000452133
- Bauer AW, Kirby WMM, Sherris JC, Turck M. Antibiotic susceptibility testing by a standardized single disk method. Am. J. Clin. Pathol. 1966 Apr;45(4_ts,):493–496. https://doi.org/10.1093/ajcp/45.4_ts.493
- Beedkar SD, Khobragade CN, Bodade RG, Vinchurkar AS. Comparative structural modeling and docking studies of uricase: Possible implication in enzyme supplementation therapy for hyperuricemic disorders. Comput Biol Med. 2012 Jun;42(6):657–666. https://doi.org/10.1016/j.compbiomed.2012.03.001
- Bobulescu IA, Moe OW. Renal transport of uric acid: Evolving concepts and uncertainties. Adv Chronic Kidney Dis. 2012 Nov; 19(6):358–371. https://doi.Org/10.1053/j.ackd.2012.07.009
- Bongaerts GP, Sin IL, Peters AL, Vogels GD. Purine degradation in Pseudomonas aeruginosa and Pseudomonas testosteroni. Biochim Biophys Acta. 1977 Aug 25;499(1):111–118. https://doi.org/10.1016/0304-4165(77)90233-1
- Castellani A, Chalmers AJ. Manual of tropical medicine. London (UK): Baillière, Tindall and Cox; 1919. https://doi.org/10.5962/bhl.title.84653
- Chaudhary K, Malhotra K, Sowers J, Aroor A. Uric acid – key ingredient in the recipe for cardiorenal metabolic syndrome. Cardiorenal Med. 2013 Oct;3(3):208–220. https://doi.org/10.1159/000355405
- Cheung WL, Hon KL, Fung CM, Leung AK. Tumor lysis syndrome in childhood malignancies. Drugs Context. 2020 Feb;9:2019-8-2. https://doi.org/10.7573/dic.2019-8-2
- Chohan S, Becker MA. Update on emerging urate-lowering therapies. Curr Opin Rheumatol. 2009 Mar;21(2):143–149. https://doi.org/10.1097/bor.0b013e328325bd94
- Clarridge JE. Impact of 16S rRNA gene sequence analysis for identification of bacteria on clinical microbiology and infectious diseases. Clin Microbiol Rev. 2004 Oct;17(4):840–862. https://doi.org/10.1128/cmr.17.4.840-862.2004
- CLSI. Performance standards for antimicrobial susceptibility testing. 34th ed. CLSI supplement M100. Wayne (USA): Clinical and Laboratory Standards Institute; 2024.
- Cruz D, Cisneros R, Benítez Á, Zúñiga-Sarango W, Peña J, Fernández H, Jaramillo A. Gram-negative bacteria from organic and conventional agriculture in the hydrographic basin of Loja: Quality or pathogen reservoir? Agronomy. 2021 Now;11(11):2362. https://doi.org/10.3390/agronomy11112362
- de Oliveira AN, de Oliveira LA, Andrade JS. Production and some properties of crude alkaline proteases of indigenous Central Amazonian rhizobia strains. Braz Arch Biol Technol. 2010 Oct;53(5):1185–1195. https://doi.org/10.1590/s1516-89132010000500024
- El Ridi R, Tallima H, Migliardo F. Biochemical and biophysical methodologies open the road for effective schistosomiasis therapy and vaccination. Biochim Biophys Acta Gen Subj. 2017 Jan; 1861(1): 3613–3620. https://doi.org/10.1016/j.bbagen.2016.03.036
- Elbanna K, Alshareef A, Neyaz LA, El-Readi MZ, Abulreesh HH. Microbial uricase and its unique potential applications. Adv Microbiol. 2024;63(2):81–91. https://doi.org/10.2478/am-2024-0007
- Elbanna K, Hassan G, Khider M, Mandour R. Safe biodegradation of textile azo dyes by newly isolated lactic acid bacteria and detection of plasmids associated with degradation. J. Bioremed Biodegrad. 2010;1:110. https://doi.org/10.4172/2155–6199.1000110
- El-Naggar NEA. Isolation, screening and identification of actinobacteria with uricase activity: Statistical optimization of fermentation conditions for improved production of uricase by Streptomyces rochei NEAE-25. Int J Pharmacol. 2015;11(7):644–658. https://doi.org/10.3923/ijp.2015.644.658
- Fathallah-Shaykh SA, Cramer MT. Uric acid and the kidney. Pediatr Nephrol. 2014 Jun;29(6):999–008. https://doi.org/10.1007/s00467-013-2549-x
- Fox GE, Wisotzkey JD, Jurtshuk P Jr. How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int J Syst Bacteriol. 1992 Jan;42(1):166–170. https://doi.org/10.1099/00207713-42-1-166
- Gabison L, Prangé T, Colloc’h N, El Hajji M, Castro B, Chiadmi M. Structural analysis of urate oxidase in complex with its natural substrate inhibited by cyanide: Mechanistic implications. BMC Struct Biol. 2008 Jul;8:32. https://doi.org/10.1186/1472-6807-8-32
- Gerhardt P, Murray RGE, Wood WA, Krieg NR. Methods for general and molecular bacteriology. Washington (USA): American Society for Microbiology; 1994.
- Ghosh T, Sarkar P. Isolation of a novel uric-acid-degrading microbe Comamonas sp. BT UA and rapid biosensing of uric acid from extracted uricase enzyme. J Biosci. 2014 Dec;39(5):805–819. https://doi.org/10.1007/s12038-014-9476-2
- Guo L, Ye L, Zhao Q, Ma Y, Yang J, Luo Y. Comparative study of MALDI-TOF MS and VITEK 2 in bacteria identification. J Thorac Dis. 2014 May;6(5):534–538.
- Hafez RM, Abdel-Rahman TM, Naguib RM. Uric acid in plants and microorganisms: Biological applications and genetics – A review. J Adv Res. 2017 Sep;8(5):475–486. https://doi.org/10.1016/j.jare.2017.05.003
- Handayani I, Utami T, Hidayat C, Rahayu ES. Screening of lactic acid bacteria producing uricase and stability assessment in simulated gastrointestinal conditions. Int Food Res J. 2018 Aug;25(4): 1661–1667.
- Honarbakhsh F, Abolmaali S, Amoozegar MA. Uricase activity of halophilic bacteria from Iranian salt lakes. Iran J Sci Technol Trans Sci. 2021 Oct;45:1597–1606. https://doi.org/10.1007/s40995-021-01179-0
- Jagathy K, Pushparaj A, Ronald J. Uricase production from Bacillus subtilis isolated from poultry waste. Int. J Adv Res Biol Sci. 2016; 3(6):255–262.
- Jalal DI. Hyperuricemia, the kidneys, and the spectrum of associated diseases: A narrative review. Curr Med Res Opin. 2016 Nov; 32(11):1863–1869. https://doi.org/10.1080/03007995.2016.1218840
- Kai L, Ma XH, Zhou XL, Jia XM, Li X, Guo KP. Purification and characterization of a thermostable uricase from Microbacterium sp. strain ZZJ4-1. World J Microbiol Biotechnol. 2008 Mar;24:401–406. https://doi.org/10.1007/s11274-007-9489-1
- Kanbay M, Segal M, Afsar B, Kang DH, Rodriguez-Iturbe B, Johnson RJ. The role of uric acid in the pathogenesis of human cardiovascular disease. Heart. 2013 Jun;99(11):759–766. https://doi.org/10.1136/heartjnl-2012-302535
- Khucharoenphaisan K, Sinma K. Production and partial characterization of uric acid degrading enzyme from new source Saccharopolyspora sp. PNR11. Pak J Biol Sci. 2011 Feb;14(3):226–231. https://doi.org/10.3923/pjbs.2011.226.231
- Kiba N, Suzuki K, Miwa T, Tachibana M, Koizumi H, Tani K. Chemiluminometric determination of uric acid in plasma by closed-loop FIA with a coimmobilized enzyme flow cell. Anal Sci 2000 Nov; 16:1203–1205. https://doi.org/10.2116/analsci.16.1203
- Kim S, Kim MH, Lee WI, Kang SY, Jeon YL. Misidentification of Acinetobacter baumannii as Alcaligenes faecalis by VITEK 2 System; Case report. Lab Med. 2017 Dec;49(1):e14-e17. https://doi.org/10.1093/labmed/lmx062
- Kim SM, Lee SH, Kim YG, Kim SY, Seo JW, Choi YW, Kim DJ, Jeong KH, Lee TW, Ihm CG, et al. Hyperuricemia-induced NLRP3 activation of macrophages contributes to the progression of diabetic nephropathy. Am J Physiol Renal Physiol. 2015 May;308(9):F993–F1003. https://doi.org/10.1152/ajprenal.00637.2014
- Koyama Y, Ichikawa T, Nakano E. Cloning, sequence analysis, and expression in Escherichia coli of the gene encoding the Candida uti-lis urate oxidase (uricase). J Biochem. 1996 Nov;120(5):969–973. https://doi.org/10.1093/oxfordjournals.jbchem.a021514
- Laemmli UK. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature. 1970 Aug;227(5259):680–685. https://doi.org/10.1038/227680a0
- Lekshmy V, Raval K. Isolation and production studies of uricase producing bacterial strains from poultry waste. Int J Adv Res Trends Eng Technol. 2016;3:152–157.
- Li J, Chen Z, Hou L, Fan H, Weng S, Xu C, Ren J, Li B, Chen W. High-level expression, purification, and characterization of nontagged Aspergillus flavus urate oxidase in Escherichia coli. Protein Expr Purif. 2006 Sep;49(1):55–59. https://doi.org/10.1016/j.pep.2006.02.003
- Liu Y, Jarman JB, Low YS, Augustijn HE, Huang S, Chen H, DeFeo ME, Sekiba K, Hou BH, Meng X, et al. A widely distributed gene cluster compensates for uricase loss in hominids. Cell. 2023 Aug;186(16):3400–3413.e20. https://doi.org/10.1016/j.cell.2023.06.010
- Lotfy WA. Production of a thermostable uricase by a novel Bacillus thermocatenulatus strain. Bioresour Technol. 2008 Mar;99(4): 699–702. https://doi.org/10.1016/j.biortech.2007.01.048
- Madigan MT, Martinko JM, Parker J. Brock biology of microorganisms. London (UK): Prentice Hall; 2000.
- Mehanni M, Abd El-Aziz S. A new bacterial strain Alcaligenes aquatilis MAG 1 associated with the Mediterranean Sea Lithophaga (Bivalvia) precipitating in nutrient free medium shell-like calcium carbonate polymorphs. Egypt Acad J Biol Sci. 2019:11(1):111–124. https://doi.org/10.21608/eajbsg.2019.153533
- Murray RGE, Brenner DJ, Colwell RR, De Vos P, Goodfellow M, Grimont PAD, Pfennig N, Stackebrandt E, Zavarzin GA. Report of the ad hoc committee on approaches to taxonomy within the Proteobacteria. Int J Syst Bacteriol. 1990 Apr;40(2):213–215. https://doi.org/10.1099/00207713-40-2-213
- Nanda P, Babu PE. Isolation, screening and production studies of uricase producing bacteria from poultry sources. Prep Biochem Biotechnol. 2014;44(8):811–821. https://doi.org/10.1080/10826068.2013.867875
- Nanda P, Jagadeesh Babu PE. Studies on the site-specific PEGylation induced interferences instigated in uricase quantification using the Bradford method. Int J Pept Res Ther. 2016 Sep;22:399–406. https://doi.org/10.1007/s10989-016-9518-8
- Nanda P, Babu PJ, Fernandes J, Hazarika P, Dhabre RR. Studies on production, optimization and purification of uricase from Gliocladium viride. Res. Biotechnol. 2012;3(4):35–46.
- Sarni, Natsir H, Dali S. Production and characterization chito-sanase of sponge symbiont bacteria Klebsiella sp. to hydrolyze chitosan be chitooligosaccarides. Mar Chim Acta. 2016 Apr; 17(1): 1441–2132.
- Nelapati AK, Meena S, Singh AK, Bhakta N, Ponnan Ettiyappan J. In silico structural and functional analysis of Bacillus uricases. Curr. Proteomics. 2021:18(2):124–142. https://doi.org/10.2174/1570164617999200512081127
- Ogawa J. Analysis of microbial purine metabolism and its application for hyperuricemia prevention. Noda City (Japan): Noda Institute for Scientific Research; 2006. [cited 2024 September 24]. Available from https://www.nisr.or.jp/wp-content/uploads/NISR06ogawa.pdf
- Page RD. TreeView: An application to display phylogenetic trees on personal computers. Comput Appl Biosci. 1996 Aug;12(4):357–358. https://doi.org/10.1093/bioinformatics/12.4.357
- Patel RK, Dodia MS, Joshi RH, Singh SP. Purification and characterization of alkaline protease from a newly isolated haloalkaliphilic Bacillus sp. Process Biochem. 2006 Sep;41(9):2002–2009. https://doi.org/10.1016/j.procbio.2006.04.016
- Pawar SV, Rathod VK. Ultrasound assisted process intensification of uricase and alkaline protease enzyme co-production in Bacillus licheniformis. Ultrason Sonochem. 2018 Jul;45:173–179. https://doi.org/10.1016/j.ultsonch.2018.03.004
- Perez-Ruiz F, Martínez-Indart L, Carmona L, Herrero-Beites AM, Pijoan JI, Krishnan E. Tophaceous gout and high level of hyperu-ricaemia are both associated with increased risk of mortality in patients with gout. Ann Rheum Dis. 2014 Jan;73(1):177–182. https://doi.org/10.1136/annrheumdis-2012-202421
- Pfrimer P, de Moraes LM, Galdino AS, Salles LP, Reis VC, De Marco JL, Prates MV, Bloch C Jr, Torres FA. Cloning, purification, and partial characterization of Bacillus subtilis urate oxidase expressed in Escherichia coli. J Biomed Biotechnol. 2010;2010:674908. https://doi.org/10.1155/2010/674908
- Pierzynowska K, Deshpande A, Mosiichuk N, Terkeltaub R, Szczurek P, Salido E, Pierzynowski S, Grujic D. Oral treatment with an engineered uricase, ALLN-346, reduces hyperuricemia, and uricosuria in urate oxidase-deficient mice. Front Med. 2020 Nov; 7:569215. https://doi.org/10.3389/fmed.2020.569215
- Pustake SO, Bhagwat PK, Dandge PB. Statistical media optimization for the production of clinical uricase from Bacillus subtilis strain SP6. Heliyon. 2019 May;5(5):e01756. https://doi.org/10.1016/j.heliyon.2019.e01756
- Pustake SO, Bhagwat P, Pillai S, Dandge PB. Purification and characterisation of uricase from Bacillus subtilis SP6. Process Biochem. 2022 Feb;113:55–61. https://doi.org/10.1016/j.procbio.2021.12.010
- Ram SK, Raval K, JagadeeshBabu PE. Enhancement of a novel extracellular uricase production by media optimization and partial purification by aqueous three-phase system. Prep Biochem Biotechnol. 2015;45(8):810–824. https://doi.org/10.1080/10826068.2014.970690
- Ravichandran R, Hemaasri S, Cameotra SS, Jayaprakash NS. Purification and characterization of an extracellular uricase from a new isolate of Sphingobacterium thalpophilum (VITPCB5). Protein Expr Purif. 2015 Oct;114:136–142. https://doi.org/10.1016/j.pep.2015.06.017
- Ray RR, Pattnaik S. Alcaligenes faecalis: a bacterium for sustainable management of environment. Environ Qual Manag. 2024; 34:e22189. https://doi.org/10.1002/tqem.22189
- Roopa RA, Mantelingu K, Guin M, Thimmaiah SB. Bienzymatic spectrophotometric method for uric acid estimation in human serum and urine. J Anal Chem. 2022 Mar; 77:301–307. https://doi.org/10.1134/s1061934822030091
- Saeed HM, Abdel-Fattah YR, Gohar YM, Elbaz MA. Purification and characterization of extracellular Pseudomonas aeruginosa urate oxidase enzyme. Pol J Microbiol. 2004;53(1):45–52.
- Saitou N, Nei M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol. 1987 Jul;4(4): 406–425. https://doi.org/10.1093/oxfordjournals.molbev.a040454
- Selvaraj C, Thirumalai VP. Screening, production and optimization of uricase from P. aeruginosa. Eur J Biotechnol Biosci 2017 Jan; 5(1):57–61.
- Simmons DG, Gray JG, Rose LP, Dillman RC, Miller SE. Isolation of an etiologic agent of acute respiratory disease (rhinotracheitis) of turkey poults. Avian Dis. 1979;23(1):194–203. https://doi.org/10.2307/1589686
- Suzuki K, Sakasegawa S, Misaki H, Sugiyama M. Molecular cloning and expression of uricase gene from Arthrobacter globiformis in Escherichia coli and characterization of the gene product. J Biosci Bioeng. 2004;98(3):153–158. https://doi.org/10.1016/s1389-1723(04)00259-2
- Tandon S, Sharma A, Singh S, Sharma S, Sarma SJ. Therapeutic enzymes: Discoveries, production and applications. J Drug Delivery Sci Technol. 2021 Jun;63:102455. https://doi.org/10.1016/j.jddst.2021.102455
- Thillainayagi S, Harikrishnan S, Jayalakshmi S. Screening, optimization and production of uricase from Alcaligenes faecalis. Int J Res Educ Sci Methods. 2021 Apr;9(4):69–74.
- Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997 Dec;25(24):4876–4882 https://doi.org/10.1093/nar/25.24.4876
- Van der Drift L, Vogels GD, Van der Drift C. Allantoin racemase: A new enzyme from Pseudomonas species. Biochim Biophys Acta. 1975 May;391(1):240–248. https://doi.org/10.1016/0005-2744(75)90170-9
- Versalovic J. Manual of Clinical Microbiology 10th ed. ASM Press, 2011. USA.
- Versalovic J, Carroll KC, Funke G, Jorgensen JH, Landry ML, Warnock DW. Manual of clinical microbiology. Washington (USA): American Society for Microbiology; 2011.
- Watanabe Y, Morita M. Effect of glucose on the uricase formation by Streptomyces sp. Agric Biol Chem. 1973 Dec;37(12):2735–2741. https://doi.org/10.1080/00021369.1973.10861086
- Wu XW, Lee CC, Muzny DM, Caskey CT. Urate oxidase: Primary structure and evolutionary implications. Proc Natl Acad Sci USA. 1989 Dec;86(23):9412–9416. https://doi.org/10.1073/pnas.86.23.9412
- Xiao J, Zhang XL, Fu C, Han R, Chen W, Lu Y, Ye Z. Soluble uric acid increases NALP3 inflammasome and interleukin-1ß expression in human primary renal proximal tubule epithelial cells through the Toll-like receptor 4-mediated pathway. Int J Mol Med. 2015 May; 35(5):1347–1354. https://doi.org/10.3892/ijmm.2015.2148
- Xu X, Hu J, Song N, Chen R, Zhang T, Ding X. Hyperuricemia increases the risk of acute kidney injury: A systematic review and meta-analysis. BMC Nephrol. 2017 Jan;18(1):27. https://doi.org/10.1186/s12882-016-0433-1
- Yang X, Yuan Y, Zhan CG, Liao F. Uricases as therapeutic agents to treat refractory gout: Current states and future directions. Drug Dev Res. 2012 Mar;73(2):66–72. https://doi.org/10.1002/ddr.20493
- Yokoyama S, Ogawa A, Obayashi A. Rapid extraction of uricase from Candida utilis cells by use of reducing agent plus surfactant. Enzyme Microb Technol. 1988 Jan;10(1):52–55. https://doi.org/10.1016/0141-0229(88)90099-3
- Zhou XL, Ma XH, Sun GQ, Li X, Guo KP. Isolation of a thermostable uricase-producing bacterium and study on its enzyme production conditions. Process Biochem. 2005 Dec;40(12):3749–3753. https://doi.org/10.1016/j.procbio.2005.05.002
- Zhu T, Chen H, Yang L, Liu Y, Li W, Sun W. Characterization and Cys-directed mutagenesis of urate oxidase from Bacillus subtilis BS04. Biologia. 2022 Jan;77:290–301. https://doi.org/10.1007/s11756-021-00941-4