References
- Abagana AY, Sun P, Liu C, Cao T, Zheng W, Zhao S, Xiang W, Wang X. Actinomadura gamaensis sp. nov., a novel actinomycete isolated from soil in Gama, Chad. Antonie Van Leeuwenhoek. 2016 Jun;109(6):833–839. https://doi.org/10.1007/s10482-016-0683-8
- Abdelkader MSA, Philippon T, Asenjo JA, Bull AT, Goodfellow M, Ebel R, Jaspars M, Rateb ME. Asenjonamides A–C, antibacterial metabolites isolated from Streptomyces asenjonii strain KNN 42.f from an extreme-hyper arid Atacama Desert soil. J Antibiot. 2018 Mar;71(4):425–431. https://doi.org/10.1038/s41429-017-0012-0
- Adachi K, Katsuta A, Matsuda S, Peng X, Misawa N, Shizuri Y, Kroppenstedt RM, Yokota A, Kasai H. Smaragdicoccus niigatensis gen. nov., sp. nov., a novel member of the suborder Corynebacterineae. Int J Syst Evol Microbiol. 2007 Feb;57(Pt 2):297–301. https://doi.org/10.1099/IJS.0.64254-0
- Affolter S, Häuselmann A, Fleitmann D, Edwards RL, Cheng H, Leuenberger M. Central Europe temperature constrained by speleothem fluid inclusion water isotopes over the past 14,000 years. Sci Adv. 2019 Jun;5(6):eaav3809. https://doi.org/10.1126/sciadv.aav3809
- Afgan E, Baker D, Batut B, van den Beek M, Bouvier D, Cech M, Chilton J, Clements D, Coraor N, Grüning BA, et al. The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update. Nucleic Acids Res. 2018 Jul;46(W1): W537–W544. https://doi.org/10.1093/nar/gky379
- Albuquerque L, França L, Rainey FA, Schumann P, Nobre MF, da Costa MS. Gaiella occulta gen. nov., sp. nov., a novel representative of a deep branching phylogenetic lineage within the class Actinobacteria and proposal of Gaiellaceae fam. nov. and Gaiellales ord. nov. Syst Appl Microbiol. 2011 Dec;34(8):595–599. https://doi.org/10.1016/j.syapm.2011.07.001
- Appelt S, Armougom F, Le Bailly M, Robert C, Drancourt M. Polyphasic analysis of a middle ages coprolite microbiota, Belgium. PLoS One. 2014a Feb;9(2):e88376. https://doi.org/10.1371/journal.pone.0088376
- Appelt S, Fancello L, Le Bailly M, Raoult D, Drancourt M, Desnues C. Viruses in a 14th-century coprolite. Appl Environ Microbiol. 2014 May;80(9):2648–2655. https://doi.org/10.1128/AEM.03242-13
- Araújo CL, Alves J, Lima A, Dias L, Silva P, Marques J, Azevedo V, Folador AS. The genus Corynebacterium in the genomic era. In: Enany S, editor. Basic biology and applications of Actinobacteria. London (UK): IntechOpen; 2018. https://doi.org/10.5772/intechopen.80445
- Asem MD, Shi L, Jiao JY, Wang D, Han MX, Dong L, Liu F, Salam N, Li WJ. Desertimonas flava gen. nov., sp. nov. isolated from a desert soil, and proposal of Ilumatobacteraceae fam. nov. Int J Syst Evol Microbiol. 2018 Nov;68(11):3593–3599. https://doi.org/10.1099/ijsem.0.003038
- Barton AH, Taylor MR, Pace NR. Molecular phylogenetic analysis of a bacterial community in an oligotrophic cave environment. Geomicrobiol J. 2004 Aug;21(1):11–20. https://doi.org/10.1080/01490450490253428
- Barton HA. Introduction to cave microbiology: A review for the non-specialist. J Cave Karst Stud. 2006 Aug;68(2):43–54.
- Bello MGD, Knight R, Gilbert JA, Blaser MJ. Preserving microbial diversity. Science. 2018 Oct;362(6410):33–34. https://doi.org/10.1126/science.aau8816
- Borgonie G, Linage-Alvarez B, Ojo A, Shivambu S, Kuloyo O, Cason ED, Maphanga S, Vermeulen JG, Litthauer D, Ralston CD, et al. Deep subsurface mine stalactites trap endemic fissure fluid Archaea, Bacteria, and Nematoda possibly originating from ancient seas. Front Microbiol. 2015 Aug 11;6:833. https://doi.org/10.3389/fmicb.2015.00833
- Boston PJ, Spilde MN, Northup DE, Melim LA, Soroka DS, Kleina LG, Lavoie KH, Hose LD, Mallory LM, Dahm CN, et al. Cave biosignature suites: microbes, minerals, and Mars. Astrobiology. 2001;1(1):25–55. https://doi.org/10.1089/153110701750137413
- Brites D, Loiseau C, Menardo F, Borrell S, Boniotti MB, Warren R, Dippenaar A, Parsons SDC, Beisel C, Behr MA, et al. A new phylogenetic framework for the animal-adapted Mycobacterium tuberculosis complex. Front Microbiol. 2018 Nov;9:2820. https://doi.org/10.3389/fmicb.2018.02820
- Bull AT, Idris H, Sanderson R, Asenjo J, Andrews B, Goodfellow M. High altitude, hyper-arid soils of the Central-Andes harbor mega-diverse communities of actinobacteria. Extremophiles. 2018 Jan;22(1):47–57. https://doi.org/10.1007/s00792-017-0976-5
- Carrier BL, Beaty DW, Meyer MA, Blank JG, Chou L, DasSarma S, Des Marais DJ, Eigenbrode JL, Grefenstette N, Lanza NL, et al. Mars extant life: What’s next? Conference report. Astrobiology. 2020 Jun;20(6):785–814. https://doi.org/10.1089/ast.2020.2237
- Cheeptham N, Sadoway T, Rule D, Watson K, Moote P, Soliman LC, Azad N, Donkor KK, Horne D. Cure from the cave: volcanic cave actinomycetes and their potential in drug discovery. Int. J. Speleol. 2013;42(1):35–47. https://doi.org/10.5038/1827-806X.42.1.5
- Chen RW, Li C, He YQ, Cui LQ, Long LJ, Tian XP. Rubrobacter tropicus sp. nov. and Rubrobacter marinus sp. nov., isolated from deep-sea sediment of the South China Sea. Int J Syst Evol Microbiol. 2020 Oct;70(10):5576–5585. https://doi.org/10.1099/ijsem.0.004449
- Chun SJ, Cui Y, Jin C, Cho AR, Wong SK, Lee HG, Oh HM, Ahn CY. Paraconexibacter algicola gen. nov., sp. nov., a novel actinobacterium isolated from a eutrophic lake during the end of cyanobacterial harmful algal blooms, and proposal of Paraconexibacteraceae fam. nov. in the order Solirubrobacterales. Int J Syst Evol Microbiol. 2020 Feb;70(2):915–922. https://doi.org/10.1099/ijsem.0.003846
- Coolen MJ, van de Giessen J, Zhu EY, Wuchter C. Bioavailability of soil organic matter and microbial community dynamics upon permafrost thaw. Environ Microbiol. 2011 Aug;13(8):2299–2314. https://doi.org/10.1111/j.1462-2920.2011.02489x
- Coolen MJ. 7000 years of Emiliania huxleyi viruses in the Black Sea. Science. 2011 Jul;333(6041):451–452. https://doi.org/10.1126/science.1200072
- Dance A. The search for microbial dark matter. Nature. 2020 Jun; 582(7811):301–303. https://doi.org/10.1038/d41586-020-01684-z
- Dawson W, Hör J, Egert M, van Kleunen M, Pester M. A small number of low-abundance bacteria dominate plant species-specific responses during rhizosphere colonization. Front Microbiol. 2017 May;8:975. https://doi.org/10.3389/fmicb.2017.00975
- De Mandal S, Chatterjee R, Kumar NS. Dominant bacterial phyla in caves and their predicted functional roles in C and N cycle. BMC Microbiol. 2017 Apr;17(1):90. https://doi.org/10.1186/s12866-017-1002-x
- Dekio I, Asahina A, Shah HN. Unravelling the eco-specificity and pathophysiological properties of Cutibacterium species in the light of recent taxonomic changes. Anaerobe. 2021 Oct;71:102411. https://doi.org/10.1016/j.anaerobe.2021.102411
- Durazzi F, Sala C, Castellani G, Manfreda G, Remondini D, De Cesare A. Comparison between 16S rRNA and shotgun sequencing data for the taxonomic characterization of the gut microbiota. Sci Rep. 2021 Feb;11(1):3030. https://doi.org/10.1038/s41598-021-82726-y
- Farda B, Djebaili R, Vaccarelli I, Del Gallo M, Pellegrini M. Actinomycetes from caves: An overview of their diversity, biotechnological properties, and insights for their use in soil environments. Microorganisms. 2022 Feb;10(2):453. https://doi.org/10.3390/microorganisms10020453
- Fernández-Gómez B, Díez B, Polz MF, Arroyo JI, Alfaro FD, Marchandon G, Sanhueza C, Farías L, Trefault N, Marquet PA, et al. Bacterial community structure in a sympagic habitat expanding with global warming: brackish ice brine at 85–90°N. ISME J. 2019 Feb;13(2):316–333. https://doi.org/10.1038/s41396-018-0268-9
- García-Descalzo L, García-López E, Postigo M, Baquero F, Alcazar A, Cid C. Eukaryotic microorganisms in cold environments: examples from Pyrenean glaciers. Front Microbiol. 2013 Mar;4:55. https://doi.org/10.3389/fmicb.2013.00055
- Ghosh S, Kuisiene N, Cheeptham N. The cave microbiome as a source for drug discovery: Reality or pipe dream? Biochem Pharmacol. 2017 Jun;134:18–34. https://doi.org/10.1016/j.bcp.2016.11.018
- Goodfellow M, Nouioui I, Sanderson R, Xie F, Bull AT. Rare taxa and dark microbial matter: novel bioactive actinobacteria abound in Atacama Desert soils. Antonie Van Leeuwenhoek. 2018 Aug;111(8):1315–1332. https://doi.org/10.1007/s10482-018-1088-7
- Goodfellow M. Phylum XXVI. Actinobacteria phyl. nov. In: Goodfellow M, Kämpfer P, Busse H-J, Trujillo ME, Suzuki K, Ludwig W, Whitman WB, editors. Bergey’s manual of systematic bacteriology. Volume 5: The Actinobacteria. New York (USA): Springer New York; 2012. p. 33–34. https://doi.org/10.1007/978-0-387-68233-4_3
- Groth I, Saiz-Jimenez C. Actinomycetes in hypogean environments. Geomicrobiol J. 1999;6(1):1–8. https://doi.org/10.1080/014904599270703
- Habib N, Khan IU, Xiao M, Li S, Saqib M, Xian WD, Butt S, Li WJ. Marmoricola caldifontis sp. nov., a novel actinobacterium isolated from a hot spring. Int J Syst Evol Microbiol. 2020 Mar; 70(3):2053–2058. https://doi.org/10.1099/ijsem.0.004016
- Han C, Zhang Y, Yu B, Shan Q, Zhao J, Shi H, Tian Y, Zhang Y, Zhu C, Xiang W. Cellulomonas triticagri sp. nov., isolated from the rhizosphere soil of wheat (Triticum aestivum L.). Arch Microbiol. 2022 Jul;204(7):449. https://doi.org/10.1007/s00203-022-03036-z
- He YQ, Chen RW, Li C, Shi SB, Cui LQ, Long LJ, Tian XP. Actinomarinicola tropica gen. nov. sp. nov., a new marine actinobacterium of the family Iamiaceae, isolated from South China Sea sediment environments. Int J Syst Evol Microbiol. 2020 Jun;70(6):3852–3858. https://doi.org/10.1099/ijsem.0.004251
- Idris H, Goodfellow M, Sanderson R, Asenjo JA, Bull AT. Actinobacterial rare biospheres and dark matter revealed in habitats of the Chilean Atacama Desert. Sci Rep. 2017 Aug;7(1):8373. https://doi.org/10.1038/s41598-017-08937-4
- Jiao JY, Liu L, Hua ZS, Fang BZ, Zhou EM, Salam N, Hedlund BP, Li WJ. Microbial dark matter coming to light: challenges and opportunities. Natl Sci Rev. 2021 Mar;8(3):nwaa280. https://doi.org/10.1093/nsr/nwaa280
- Jin D, Kong X, Li H, Luo L, Zhuang X, Zhuang G, Deng Y, Bai Z. Patulibacter brassicae sp. nov., isolated from rhizosphere soil of Chinese cabbage (Brassica campestris). Int J Syst Evol Microbiol. 2016 Dec;66(12):5056–5060. https://doi.org/10.1099/ijsem.0.001469
- Jones DS, Havlena ZE, Macalady JL. Microbial ecology, evolution, and biosignature potential in isolated chemosynthetic cave ecosystems. Paper presented at: The Mars Extant Life: What’s Next?; 2019 November 5–8; Carlsbad (USA). Houston (USA): Lunar and Planetary Institute; 2019. Available from http://wwwhou.usra.edu/meetings/lifeonmars2019/pdf/5030.pdf
- Kim DU, Kim SG, Lee H, Park AY, Ka JO. Oryzihumus soli sp. nov , isolated from soil and emended description of the genus Oryzihumus. Int J Syst Evol Microbiol. 2017 Oct;67(10):3960–3964. https://doi.org/10.1099/ijsem.0.002231
- Klindworth A, Pruesse E, Schweer T, Peplies J, Quast C, Horn M, Glöckner FO. Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Res. 2013 Jan;41(1):e1. https://doi.org/10.1093/nar/gks808
- Koitsanou E, Sarantopoulou J, Komnenou A, Exadactylos A, Dendrino P, Papadopoulos E, Gkafas GA. First report of the parasitic nematode Pseudoterranova spp. found in Mediterranean monk seal (Monachus monachus) in Greece: Conservation implications. Conserv. 2022;2(1):122–133. https://doi.org/10.3390/conservation2010010
- Komnenou AT, Gkafas GA, Kofidou E, Sarantopoulou J, Exadactylos A, Tounta E, Koemtzopoulos K, Dendrinos P, Karamanlidis AA, Gulland F, et al. First report of Uncinaria hamiltoni in orphan Eastern Mediterranean monk seal pups in Greece and its clinical significance. Pathogens. 2021 Dec 3;10(12):1581. https://doi.org/10.3390/pathogens10121581
- Kozich JJ, Westcott SL, Baxter NT, Highlander SK, Schloss PD. Development of a dual-index sequencing strategy and curation pipeline for analyzing amplicon sequence data on the MiSeq Illumina sequencing platform. Appl Environ Microbiol. 2013 Sep; 79(17): 5112–5120. https://doi.org/10.1128/AEM.01043-13
- Laiz L, Groth I, Gonzalez I, Saiz-Jimenez C. Microbiological study of the dripping waters in Altamira cave (Santillana del Mar, Spain). J Microbiol Methods. 1999 May;36(1–2):129–138. https://doi.org/10.1016/S0167-7012(99)00018-4
- Lee D, Jang JH, Cha S, Seo T. Thalassiella azotovora gen. nov., sp. nov , a new member of the family Kineosporiaceae isolated from sea water in South Korea. Curr Microbiol. 2016 Nov;73(5):676–683. https://doi.org/10.1007/s00284-016-1112-y
- Lee DW, Lee SD. Allocatelliglobosispora scoriae gen. nov., sp. nov., isolated from volcanic ash. Int J Syst Evol Microbiol. 2011 Feb; 61(2): 264–270. https://doi.org/10.1099/ijs.0.020313-0
- Lee SD. Conexibacter stalactiti sp. nov., isolated from stalactites in a lava cave and emended description of the genus Conexibacter. Int J Syst Evol Microbiol. 2017 Sep;67(9):3214–3218. https://doi.org/10.1099/ijsem.0.002083
- Lemma E, Zimhony O, Greenblatt CL, Koltunov V, Zylber MI, Vernon K, Spigelman M. Attempts to revive Mycobacterium tuberculosis from 300-year-old human mummies. FEMS Microbiol Lett. 2008 Jun;283(1):54–61. https://doi.org/10.1111/j.1574-6968.2008.01150x
- Li X, Wang Z, Lu F, Zhang H, Tian J, He L, Chu Y, Tian Y. Actinocorallia populi sp. nov., an endophytic actinomycete isolated from a root of Populus adenopoda (Maxim.). Int J Syst Evol Microbiol. 2018 Jul;68(7):2325–2330. https://doi.org/10.1099/ijsem.0.002840
- Liang Y, Xiao X, Nuccio EE, Yuan M, Zhang N, Xue K, Cohan FM, Zhou J, Sun B. Differentiation strategies of soil rare and abundant microbial taxa in response to changing climatic regimes. Environ Microbiol. 2020 Apr;22(4):1327–1340. https://doi.org/10.1111/1462-2920.14945
- Liu C, Guo Y, Li L, Wang X, Lin J, Wang X, Li J, Chu Y. Catellatospora sichuanensis sp. nov., a novel actinobacterium isolated from soil. Int J Syst Evol Microbiol. 2020 May;70(5):3309–3315. https://doi.org/10.1099/ijsem.0.004175
- Long Y, Jiang J, Hu X, Zhou J, Hu J, Zhou S. Actinobacterial community in Shuanghe Cave using culture-dependent and -independent approaches. World J Microbiol Biotechnol. 2019 Oct; 35(10):153. https://doi.org/10.1007/s11274-019-2713-y
- Lugli GA, Calvete-Torre I, Alessandri G, Milani C, Turroni F, Laiolo P, Ossiprandi MC, Margolles A, Ruiz L, Ventura M. Phylogenetic classification of ten novel species belonging to the genus Bifidobacterium comprising B. phasiani sp. nov., B. pongonis sp. nov., B. saguinibicoloris sp. nov., B. colobi sp. nov., B. simiiventris sp. nov., B. santillanense sp. nov., B. miconis sp. nov., B. amazonense sp. nov., B. pluvialisilvae sp. nov., and B. miconisargentati sp. nov. Syst Appl Microbiol. 2021 Nov;44(6):126273. https://doi.org/10.1016/j.syapm.2021.126273
- Mann J. Natural products as immunosuppressive agents. Nat Prod Rep. 2001 Aug;18(4):417–430. https://doi.org/10.1039/B001720P
- Martiny JB, Bohannan BJ, Brown JH, Colwell RK, Fuhrman JA, Green JL, Horner-Devine MC, Kane M, Krumins JA, Kuske CR, et al. Microbial biogeography: putting microorganisms on the map. Nat Rev Microbiol. 2006 Feb;4(2):102–112. https://doi.org/10.1038/nrmicro1341
- Melim LA, Northup DE, Boston PJ, Spilde MN. Preservation of fossil microbes and biofilm in cave pool carbonates and comparison to other microbial carbonate environments. Palaios. 2016 Apr; 31(4):177–189. https://doi.org/10.2110/palo.2015.033
- Michail G, Karapetsi L, Madesis P, Reizopoulou A, Vagelas I. Metataxonomic analysis of bacteria entrapped in a stalactite’s core and their possible environmental origins. Microorganisms. 2021 Nov; 9(12):2411. https://doi.org/10.3390/microorganisms9122411
- Northup DE, Hathaway JJM, Spilde MN, Moser DP, Blank JG. Investigating the mineral: microbe continuum in lava caves to enhance selection of life detection targets. Paper presented at: The Mars Extant Life: What’s Next?; 2019 November 5–8; Carlsbad (USA). Houston (USA): Lunar and Planetary Institute; 2019. Available from https://wwwhou.usra.edu/meetings/lifeonmars2019/pdf/5037.pdf
- Northup DE, Melim LA, Spilde MN, Hathaway JJ, Garcia MG, Moya M, Stone FD, Boston PJ, Dapkevicius ML, Riquelme C. Lava cave microbial communities within mats and secondary mineral deposits: implications for life detection on other planets. Astrobiology. 2011 Sep;11(7):601–618. https://doi.org/10.1089/ast.2010.0562
- Oren A, Garrity GM. Notification that new names of prokaryotes, new combinations, and new taxonomic opinions have appeared in volume 71, part 10 of the IJSEM. Int J Syst Evol Microbiol. 2022 Feb; 72(1):005165. https://doi.org/10.1099/ijsem.0.005165
- Parte AC, Sardà Carbasse J, Meier-Kolthoff JP, Reimer LC, Göker M. List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. Int J Syst Evol Microbiol. 2020 Nov; 70(11):5607–5612 https://doi.org/10.1099/ijsem.0.004332
- Rangseekaew P, Pathom-Aree W. Cave Actinobacteria as producers of bioactive metabolites. Front Microbiol. 2019 Mar;10:387. https://doi.org/10.3389/fmicb.2019.00387
- Rivera-Perez JI, Santiago-Rodriguez TM, Toranzos GA. Paleomicrobiology: a snapshot of ancient microbes and approaches to forensic microbiology. Microbiol Spectr. 2016 Aug;4(4):4.4.31. https://doi.org/10.1128/microbiolspec.EMF-0006-2015
- Roh SG, Lee C, Kim MK, Kang HJ, Kim YS, Kim MJ, Malik A, Kim SB. Nocardioides euryhalodurans sp. nov., Nocardioides seonyuensis sp. nov. and Nocardioides eburneiflavus sp. nov., isolated from soil. Int J Syst Evol Microbiol. 2020 Apr;70(4):2682–2689. https://doi.org/10.1099/ijsem.0.004095
- Sakdapetsiri C, Kuntaveesuk A, Ngaemthao W, Suriyachadkun C, Muangchinda C, Chavanich S, Viyakarn V, Chen B, Pinyakong O. Paeniglutamicibacter terrestris sp. nov., isolated from phenanthrene-degrading consortium enriched from Antarctic soil. Int J Syst Evol Microbiol. 2019 Jun;71(3). https://doi.org/10.1099/ijsem.0.004689
- Sanmartín, I. Historical biogeography: Evolution in time and space. Evo Edu Outreach. 2012;5:555–568. https://doi.org/10.1007/s12052-012-0421-2
- Savini V, Catavitello C, Masciarelli G, Astolfi D, Balbinot A, Bianco A, Febbo F, D’Amario C, D’Antonio D. Drug sensitivity and clinical impact of members of the genus Kocuria. J Med Microbiol. 2010 Dec;59(12):1395–1402. https://doi.org/10.1099/jmm.0.021709-0
- Saygin H, Ay H, Guven K, Sahin N. Genome-based classification of three novel actinobacteria from the Karakum Desert: Jiangella asiatica sp. nov., Jiangella aurantiaca sp. nov. and Jiangella ureilytica sp. nov. Int J Syst Evol Microbiol. 2020 Mar;70(3):1993–2002. https://doi.org/10.1099/ijsem.0.004011
- Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, et al. Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol. 2009 Dec;75(23): 7537–7541. https://doi.org/10.1128/AEM.01541-09
- Sen A, Daubin V, Abrouk D, Gifford I, Berry AM, Normand P. Phylogeny of the class Actinobacteria revisited in the light of complete genomes. The orders ‘Frankiales’ and Micrococcales should be split into coherent entities: proposal of Frankiales ord. nov., Geodermatophilales ord. nov., Acidothermales ord. nov. and Nakamurellales ord. nov. Int J Syst Evol Microbiol. 2014 Nov;64(11):3821–3832. https://doi.org/10.1099/ijs.0.063966-0
- Shin Y, Lee BH, Lee KE, Park W. Pseudarthrobacter psychrotolerans sp. nov., a cold-adapted bacterium isolated from Antarctic soil. Int J Syst Evol Microbiol. 2020 Dec;70(12):6106–6114. https://doi.org/10.1099/ijsem.0.004505
- Siddiqi MZ, Lee SY, Choi KD, Im WT. Aeromicrobium panacisoli sp. nov. isolated from soil of ginseng cultivating field. Curr Microbiol. 2018 May;75(5):624–629. https://doi.org/10.1007/s00284-017-1426-4
- Stackebrandt E. The family Dermabacteraceae. In: Rosenberg E, DeLong EF, Lory S, Stackebrandt E, Thompson F, editors. The Prokaryotes. Berlin, Heidelberg (Germany): Springer; 2014. https://doi.org/10.1007/978-3-642-30138-4_170
- Tamura T, Hayakawa M, Hatano K. Sporichthya brevicatena sp. nov. Int J Syst Bacteriol. 1999 Oct;49(4):1779–1784. https://doi.org/10.1099/00207713-49-4-1779
- Tierney JE, Poulsen CJ, Montañez IP, Bhattacharya T, Feng R, Ford HL, Hönisch B, Inglis GN, Petersen SV, Sagoo N, et al. Past climates inform our future. Science. 2020 Nov;370(6517):eaay3701. https://doi.org/10.1126/science.aay3701
- Tomczyk-Zak K, Zielenkiewicz U. Microbial diversity in caves. Geomicrobiol J. 2016;33(1):20–38. https://doi.org/10.1080/01490451.2014.1003341
- Troussellier M, Escalas A, Bouvier T, Mouillot D. Sustaining rare marine microorganisms: Macroorganisms as repositories and dispersal agents of microbial diversity. Front Microbiol. 2017 May;8:947. https://doi.org/10.3389/fmicb.2017.00947
- Uckert K, Chanover NJ, Getty S, Voelz DG, Brinckerhoff WB, McMillan N, Xiao X, Boston PJ, Li X, McAdam A, et al. The characterization of biosignatures in caves using an instrument suite. Astrobiology. 2017 Dec;17(12):1203–1218. https://doi.org/10.1089/ast.2016.1568
- Undabarrena A, Salvà-Serra F, Jaén-Luchoro D, Castro-Nallar E, Mendez KN, Valencia R, Ugalde JA, Moore ERB, Seeger M, Cámara B. Complete genome sequence of the marine Rhodococcus sp. H-CA8f isolated from Comau fjord in Northern Patagonia, Chile. Mar Genomics. 2018 Jul;40:13–17. https://doi.org/10.1016/J.MARGEN.2018.01.004
- Xie YG, Fang BZ, Han MX, Liu L, Jiao JY, Zhang XT, Xiao M, Li WJ. Microlunatus speluncae sp. nov., a novel actinobacterium isolated from a Karstic subterranean environment sample. Antonie Van Leeuwenhoek. 2020 Jan;113(1):117–125. https://doi.org/10.1007/s10482-019-01321-4
- Yang ZW, Asem MD, Li X, Li LY, Salam N, Alkhalifah DHM, Hozzein WN, Nie GX, Li WJ. Blastococcus deserti sp. nov., isolated from a desert sample. Arch Microbiol. 2019 Mar;201(2):193–198. https://doi.org/10.1007/s00203-018-1604-1
- Zhang YG, Liu Q, Wang HF, Zhang DF, Zhang YM, Park DJ, Kim CJ, Li WJ. Haloactinopolyspora alkaliphila sp. nov., and emended description of the genus Haloactinopolyspora. Int J Syst Evol Microbiol. 2014 Jun;64(6):1945–1951. https://doi.org/10.1099/ijs.0.062646-0
- Zhi XY, Li WJ, Stackebrandt E. An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa. Int J Syst Evol Microbiol. 2009 Mar;59(3):589–608. https://doi.org/10.1099/ijs.0.65780-0
- Zhu HZ, Zhang ZF, Zhou N, Jiang CY, Wang BJ, Cai L, Liu SJ. Diversity, distribution and co-occurrence patterns of bacterial communities in a karst cave system. Front Microbiol. 2019 Aug;10:1726. https://doi.org/10.3389/fmicb.2019.01726