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Comparative Genome Analysis of a Novel Alkaliphilic Actinobacterial Species Nesterenkonia haasae Cover

Comparative Genome Analysis of a Novel Alkaliphilic Actinobacterial Species Nesterenkonia haasae

Open Access
|Sep 2022

Figures & Tables

Fig. 1

Graphical circular map of the genomes showing the presence and absence of the gene. The important genes were highlighted.
Graphical circular map of the genomes showing the presence and absence of the gene. The important genes were highlighted.

Fig. 2

Functional annotation of Nesterenkonia haasae using RAST server.
Functional annotation of Nesterenkonia haasae using RAST server.

Fig. 3

Pangenome analysis of Nesterenkonia members.
Pangenome analysis of Nesterenkonia members.

Fig. 4

Phylogenomic tree based on 71 bacterial single-copy genes showing the position of Nesterenkonia members. Bootstrap values (expressed as percentages of 1,000 replications) greater than 50% are shown at branch points. Bar, 0.05 represents substitution per nucleotide position. Arthrobacter pigmenti was used as an out-group.
Phylogenomic tree based on 71 bacterial single-copy genes showing the position of Nesterenkonia members. Bootstrap values (expressed as percentages of 1,000 replications) greater than 50% are shown at branch points. Bar, 0.05 represents substitution per nucleotide position. Arthrobacter pigmenti was used as an out-group.

antiSMASH results of Nesterenkonia members_

Nesterenkonia membersMost similar known clusterSimilarity
N. albaEctoine75%
N. alkaliphilaKocurin88%
Ectoine75%
T3pks3%
Redox-cofactor100%
Livipeptin66%
N. aurantiacaTerpenes28%
Ectoine50%
N. haasaeChejuenolide A/Chejuenolide B7%
Terpenes28%
Foxicins A-D4%
Ectoine75%
N. halotoleransTerpenes28%
Tetronasin3%
Ectoine50%
N. jeotgaliTerpenes28%
Ectoine50%
N. lacusekhoensisGlycopeptidolipid20%
Terpenes21%
Ectoine75%
N. luteTerpenes28%
Ectoine75%
N. massiliensisEctoine50%
Terpenes28%
N. muleiensisEctoine75%
Terpenes50%
N. natronophilaEctoine75%
Terpenes28%
N. pannonicaEctoine50%
Terpenes21%
N. populiSalinichelins23%
Ectoine75%
Terpenes50%
N. salmoneaTerpenes28%
Tetronasin3%
Ectoine75%
N. sandarakinaPentalenolactone15%
Ectoine50%
Ishigamide11%
Terpenes28%
N. sedimentiEctoine75%
Lankacidin C13%
N. sphaericaTerpenes50%
Ectoine50%
N. xinjiangensisTerpenes28%
Pentostatine/Vidarabine9%
Ectoine75%
Desferrioxamin B60%

Genome attributes of present study Nesterenkonia members_

Nesterenkonia members (accession numbers)Genome completeness (%)Genome contamination (%)Genome size (bp)Genomic DNA G + C (%)rRNAstRNAs
“stercoripullorum” Candidatus Nesterenkonia (DXGD00000000)84.33.72,634,13465.8034
N. alba (ATXP00000000) 98.302,591,86663.7649
N. alkaliphile (BMFX00000000)  98.81.43,397,28664.7549
N. aurantiaca (SOAN00000000) 99.102,947,64967.5348
N. cremea (BMIS00000000)  99.50.83,083,45166.8550
N. haasae (VFIE00000000)  99.11.23,433,06360.8748
N. halophila (WIAX00000000)  75.90.072,188,00871.7431
N. halotolerans (JADBEE000000000)  99.11.22,966,10166.2647
N. jeotgali (JACJIH000000000)  98.53.23,002,98567.4650
N. lacusekhoensis (JAGINX000000000)1000.92,742,64966.6655
N. lutea (JADBED000000000)  99.50.072,958,12366.7647
N. massiliensis (CBLL000000000)  97.70.42,641,00062.8346
N. muleiensis (QWLD00000000)  97.70.83,676,11163.5246
N. natronophila (QYZP00000000)  98.30.072,524,48961.8547
N. pannonica (CP080575)  70.40.82,699,45366648
N. populi (VOIL00000000)  98.10.82,551,27866.8649
N. salmonea (VAVZ00000000)  99.10.33,283,67561.1351
N. sandarakina (JACCFQ000000000) 98.513,017,44867.5647
N. sedimenti (JABAHY000000000)98.81.63,113,98063349
N. sphaerica (VAWA00000000)  991.42,791,17664.2547
N. xinjiangensis (JACCFY000000000)  99.70.63,569,37068.8649
DOI: https://doi.org/10.33073/pjm-2022-040 | Journal eISSN: 2544-4646 | Journal ISSN: 1733-1331
Language: English
Page range: 453 - 461
Submitted on: May 3, 2022
Accepted on: Jul 31, 2022
Published on: Sep 24, 2022
Published by: Polish Society of Microbiologists
In partnership with: Paradigm Publishing Services
Publication frequency: 4 issues per year

© 2022 Shuang Wang, Lei Sun, Manik Prabhu Narsing Rao, Bao‑zhu Fang, Wen‑jun Li, published by Polish Society of Microbiologists
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.