References
- Cerqueira GC, Earl AM, Ernst CM, Grad YH, Dekker JP, Feldgarden M, Chapman SB, Reis-Cunha JL, Shea TP, Young S, et al. Multi-institute analysis of carbapenem resistance reveals remarkable diversity, unexplained mechanisms, and limited clonal outbreaks. Proc Natl Acad Sci USA. 2017 Jan 31;114(5):1135–1140. https://doi.org/10.1073/pnas.1616248114
- DiazGranados CA, Jones MY, Kongphet-Tran T, White N, Shapiro M, Wang YF, Ray SM, Blumberg HM. Outbreak of Pseudomonas aeruginosa infection associated with contamination of a flexible bronchoscope. Infect Control Hosp Epidemiol. 2009 Jun; 30(6):550–555. https://doi.org/10.1086/597235
- Galdys AL, Marsh JW, Delgado E, Pasculle AW, Pacey M, Ayres AM, Metzger A, Harrison LH, Muto CA. Bronchoscope-associated clusters of multidrug-resistant Pseudomonas aeruginosa and carbapenem-resistant Klebsiella pneumoniae. Infect Control Hosp Epidemiol. 2019 Jan;40(1):40–46. https://doi.org/10.1017/ice.2018.263
- Gastmeier P, Vonberg RP. Klebsiella spp. in endoscopy-associated infections: we may only be seeing the tip of the iceberg. Infection. 2014 Feb;42(1):15–21. https://doi.org/10.1007/s15010-013-0544-6
- Gu Q, Wang H, Fang Y, Lu Y, Shen Z, Wang Y, Wu X, Cen L, Chen Y. Analysis of an improved workflow of endoscope reprocessing for bedside endoscopic diagnosis and treatment on COVID-19 patients. J Zhejiang Univ Sci B. 2020 May;21(5):416–422. https://doi.org/10.1631/jzus.B2000109
- Guy M, Vanhems P, Dananché C, Perraud M, Regard A, Hulin M, Dauwalder O, Bertrand X, Crozon-Clauzel J, Floccard B, et al. Outbreak of pulmonary Pseudomonas aeruginosa and Stenotrophomonas maltophilia infections related to contaminated bronchoscope suction valves, Lyon, France, 2014. Euro Surveill. 2016 Jul 14;21(28):21. https://doi.org/10.2807/1560-7917.ES.2016.21.28.30286
- Jørgensen SB, Bojer MS, Boll EJ, Martin Y, Helmersen K, Skogstad M, Struve C. Heat-resistant, extended-spectrum β-lactamase-producing Klebsiella pneumoniae in endoscope-mediated outbreak. J Hosp Infect. 2016 May;93(1):57–62. https://doi.org/10.1016/j.jhin.2016.01.014
- Kirschke DL, Jones TF, Craig AS, Chu PS, Mayernick GG, Patel JA, Schaffner W. Pseudomonas aeruginosa and Serratia marcescens contamination associated with a manufacturing defect in bronchoscopes. N Engl J Med. 2003 Jan 16;348(3):214–220. https://doi.org/10.1056/NEJMoa021791
- Liao W, Quan J, Liu L, Zhao D, Jiang Y, Du X, Zhao F, Yu Y, Zhou Z. New insights into the mechanisms of colistin resistance in Klebsiella aerogenes of clinical origin. Int J Antimicrob Agents. 2020 Jun;55(6):105990. https://doi.org/10.1016/j.ijantimicag.2020.105990
- Liu Q, Liu L, Li Y, Chen X, Yan Q, Liu W. Fecal carriage and epidemiology of carbapenem-resistant Enterobacteriaceae among hospitalized patients in a university hospital. Infect Drug Resist. 2019 Dec;12:3935–3942. https://doi.org/10.2147/IDR.S233795
- Ma DY, Huang HY, Zou H, Wu ML, Lin QX, Liu B, Huang SF. Carbapenem-Resistant Klebsiella aerogenes clinical isolates from a teaching hospital in Southwestern China: detailed molecular epidemiology, resistance determinants, risk factors and clinical outcomes. Infect Drug Resist. 2020 Feb;13:577–585. https://doi.org/10.2147/IDR.S235975
- Malek A, McGlynn K, Taffner S, Fine L, Tesini B, Wang J, Mostafa H, Petry S, Perkins A, Graman P, et al. Next-generation-sequencing-based hospital outbreak investigation yields insight into Klebsiella aerogenes population structure and determinants of carbapenem resistance and pathogenicity. Antimicrob Agents Chemother. 2019 Jun;63(6):63. https://doi.org/10.1128/AAC.02577-18
- Miao M, Wen H, Xu P, Niu S, Lv J, Xie X, Mediavilla JR, Tang YW, Kreiswirth BN, Zhang X, et al. Genetic diversity of carbapenem-resistant Enterobacteriaceae (CRE) clinical isolates from a tertiary hospital in Eastern China. Front Microbiol. 2019 Jan 15;9:3341. https://doi.org/10.3389/fmicb.2018.03341
- Passarelli-Araujo H, Palmeiro JK, Moharana KC, Pedrosa-Silva F, Dalla-Costa LM, Venancio TM. Genomic analysis unveils important aspects of population structure, virulence, and antimicrobial resistance in Klebsiella aerogenes. FEBS J. 2019a Oct; 286(19):3797–3810. https://doi.org/10.1111/febs.15005
- Passarelli-Araujo H, Palmeiro JK, Moharana KC, Pedrosa-Silva F, Dalla-Costa LM, Venancio TM. Molecular epidemiology of 16S rRNA methyltransferase in Brazil: RmtG in Klebsiella aerogenes ST93 (CC4). An Acad Bras Cienc. 2019b;91 suppl 1:e20180762. https://doi.org/10.1590/0001-376520182018762
- Price MN, Dehal PS, Arkin AP. FastTree: computing large minimum evolution trees with profiles instead of a distance matrix. Mol Biol Evol. 2009 Jul 01;26(7):1641–1650. https://doi.org/10.1093/molbev/msp077
- Qin X, Yang Y, Hu F, Zhu D. Hospital clonal dissemination of Enterobacter aerogenes producing carbapenemase KPC-2 in a Chinese teaching hospital. J Med Microbiol. 2014 Feb 01;63(2):222–228. https://doi.org/10.1099/jmm.0.064865-0
- Shen X, Liu L, Yu J, Cao X, Zhan Q, Guo Y, Wang L, Yu F. Coexistence of blaNDM-1 and rmtC on a transferrable plasmid of a novel ST192 Klebsiella aerogenes clinical isolate. Infect Drug Resist. 2019 Dec;12:3883–3891. https://doi.org/10.2147/IDR.S228130
- Srinivasan A, Wolfenden LL, Song X, Mackie K, Hartsell TL, Jones HD, Diette GB, Orens JB, Yung RC, Ross TL, et al. An outbreak of Pseudomonas aeruginosa infections associated with flexible bronchoscopes. N Engl J Med. 2003 Jan 16;348(3):221–227. https://doi.org/10.1056/NEJMoa021808
- Tian D, Wang B, Zhang H, Pan F, Wang C, Shi Y, Sun Y. Dissemination of the blaNDM-5 gene via IncX3-type plasmid among Enterobacteriaceae in children. MSphere. 2020 Feb 26;5(1):5. https://doi.org/10.1128/mSphere.00699-19
- Zamani A. Rigid bronchoscopy induced bacterial translocation: is it a real threat? Eur Respir J. 2004 Feb;23(2):352.1–352, author reply 352–353. https://doi.org/10.1183/09031936.03.00114303a
- Zankari E, Hasman H, Cosentino S, Vestergaard M, Rasmussen S, Lund O, Aarestrup FM, Larsen MV. Identification of acquired antimicrobial resistance genes. J Antimicrob Chemother. 2012 Nov 01;67(11):2640–2644. https://doi.org/10.1093/jac/dks261
- Zerbino DR, Birney E. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 2008 Feb 21; 18(5): 821–829. https://doi.org/10.1101/gr.074492.107
- Zheng B, Xu H, Lv T, Guo L, Xiao Y, Huang C, Zhang S, Chen Y, Han H, Shen P, et al. Stool Samples of acute diarrhea inpatients as a reservoir of ST11 hypervirulent KPC-2-producing Klebsiella pneumoniae. mSystems. 2020 Jun 30;5(3):5. https://doi.org/10.1128/mSystems.00498-20
- Zheng B, Zhang J, Ji J, Fang Y, Shen P, Ying C, Lv J, Xiao Y, Li L. Emergence of Raoultella ornithinolytica coproducing IMP-4 and KPC-2 carbapenemases in China. Antimicrob Agents Chemother. 2015 Nov;59(11):7086–7089. doi:10.1128/AAC.01363-15