References
- Albareda M, Manyani H, Imperial J, Brito B, Ruiz-Argüeso T, Böck A, Palacios JM. Dual role of HupF in the biosynthesis of [NiFe] hydrogenase in Rhizobium leguminosarum. BMC Microbiol. 2012;12(1):256–256. https://doi.org/10.1186/1471-2180-12-256
- Allen MB, Arnon DI. Studies on nitrogen-fixing blue-green algae. I. Growth and nitrogen fixation by Anabaena cylindrica Lemm. Plant Physiol. 1955 Jul 01;30(4):366–372., https://doi.org/10.1104/pp.30.4.366
- Barnett MJ, Bittner AN, Toman CJ, Oke V, Long SR. Dual RpoH sigma factors and transcriptional plasticity in a symbiotic bacterium. J Bacteriol. 2012 Sep 15;194(18):4983–4994. https://doi.org/10.1128/JB.00449-12
- Barnett MJ, Fisher RF, Jones T, Komp C, Abola AP, Barloy-Hubler F, Bowser L, Capela D, Galibert F, Gouzy J, et al. Nucleotide sequence and predicted functions of the entire Sinorhizobium meliloti pSymA megaplasmid. Proc Natl Acad Sci USA. 2001 Aug 14;98(17):9883–9888. https://doi.org/10.1073/pnas.161294798
- Bobik C, Meilhoc E, Batut J. FixJ: a major regulator of the oxygen limitation response and late symbiotic functions of Sinorhizobium meliloti. J Bacteriol. 2006 Jul 01;188(13):4890–4902. https://doi.org/10.1128/JB.00251-06
- Capela D, Barloy-Hubler F, Gouzy J, Bothe G, Ampe F, Batut J, Boistard P, Becker A, Boutry M, Cadieu E, et al. Analysis of the chromosome sequence of the legume symbiont Sinorhizobium meliloti strain 1021. Proc Natl Acad Sci USA. 2001 Aug 14;98(17): 9877–9882. https://doi.org/10.1073/pnas.161294398
- Chien CT, Rupp R, Beck S, Orser CS. Proline auxotrophic and catabolic mutants of Rhizobium leguminosarum biovar viciae strain C1204b are unaffected in nitrogen fixation. FEMS Microbiol Lett. 1991 Jan;77(2–3):299–302. https://doi.org/10.1111/j.1574-6968.1991.tb04365.x
- Cunningham SD, Kapulnik Y, Phillips DA. Distribution of hydrogen-metabolizing bacteria in Alfalfa field soil. Appl Environ Microbiol. 1986;52(5):1091–1095. https://doi.org/10.1128/AEM.52.5.1091-1095.1986
- Defez R, Esposito R, Angelini C, Bianco C. Overproduction of indole-3-acetic acid in free-living Rhizobia induces transcriptional changes resembling those occurring in nodule bacteroids. Mol Plant Microbe Interact. 2016 Jun;29(6):484–495. https://doi.org/10.1094/MPMI-01-16-0010-R
- Dong Z, Wu L, Kettlewell B, Caldwell CD, Layzell DB. Hydrogen fertilization of soils – is this a benefit of legumes in rotation? Plant Cell Environ. 2003 Nov;26(11):1875–1879. https://doi.org/10.1046/j.1365-3040.2003.01103.x
- Elboutahiri N, Thami-Alami I, Udupa SM. Phenotypic and genetic diversity in Sinorhizobium meliloti and S. medicae from drought and salt affected regions of Morocco. BMC Microbiol. 2010;10(1):15–0. https://doi.org/10.1186/1471-2180-10-15
- Galibert F, Finan TM, Long SR, Pühler A, Abola P, Ampe F, Barloy-Hubler F, Barnett MJ, Becker A, Boistard P, et al. The composite genome of the legume symbiont Sinorhizobium meliloti. Science. 2001 Jul 27;293(5530):668–672. https://doi.org/10.1126/science.1060966
- Golding AL. H2-oxidizing, plant growth promoting rhizobacteria as seed inoculants for barley. Halifax (Canada): Saint Mary’s University; 2009.
- Hesterman OB, Sheaffer CC, Barnes DK, Lueschen WE, Ford JH. Alfalfa dry matter and nitrogen production and fertilizer nitrogen response in leguminous-corn rotation. Agron J. 1986 Jan;78(1):19–23. https://doi.org/10.2134/agronj1986.00021962007800010005x
- Kanehisa M, Goto S. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res. 2000;28:27–30.
- Kärst U, Suetin S, Friedrich CG. Purification and properties of a protein linked to the soluble hydrogenase of hydrogen-oxidizing bacteria. J Bacteriol. 1987;169(5):2079–2085. https://doi.org/10.1128/JB.169.5.2079-2085.1987
- La Favre JS, Focht DD. Conservation in soil of H2 liberated from N2 fixation by Hup-nodules. Appl Environ Microbiol. 1983;46(2): 304–311. https://doi.org/10.1128/AEM.46.2.304-311.1983
- Langmead B, Salzberg SL. Fast gapped-read alignment with Bowtie 2. Nat Methods. 2012 Apr;9(4):357–359. https://doi.org/10.1038/nmeth.1923
- Li J, Han S, Ding X, He T, Dai J, Yang S, Gai J. Comparative transcriptome analysis between the cytoplasmic male sterile line NJCMS1A and its maintainer NJCMS1B in soybean (Glycine max (L.) Merr.). PLoS One. 2015 May 18;10(5):e0126771. https://doi.org/10.1371/journal.pone.0126771
- López M, Carbonero V, Cabrera E, Ruiz-Argüeso T. Effects of host on the expression of the H2-uptake hydrogenase of Rhizobium in legume nodules. Plant Sci Lett. 1983 Apr;29(2–3):191–199. https://doi.org/10.1016/0304-4211(83)90143-8
- McLearn N, Dong Z. Microbial nature of the hydrogen-oxidizing agent in hydrogen-treated soil. Biol Fertil Soils. 2002 Jul 1;35(6): 465–469. https://doi.org/10.1007/s00374-002-0495-z
- Millar AH, Day DA, Bergersen FJ. Microaerobic respiration and oxidative phosphorylation by soybean nodule mitochondria: implications for nitrogen fixation. Plant Cell Environ. 1995 Jul; 18(7): 715–726. https://doi.org/10.1111/j.1365-3040.1995.tb00574.x
- Muller PY, Janovjak H, Miserez AR, Dobbie Z. Processing of gene expression data generated by quantitative real-time RT-PCR. Biotechniques. 2002 Jun;32(6):1372–1374, 1376, 1378–1379.
- Osborne CA, Peoples MB, Janssen PH. Detection of a reproducible, single-member shift in soil bacterial communities exposed to low levels of hydrogen. Appl Environ Microbiol. 2010 Mar 01;76(5):1471–1479. https://doi.org/10.1128/AEM.02072-09
- Parry R, Asgari S. Aedes anphevirus: an insect-specific virus distributed worldwide in Aedes aegypti mosquitoes that has complex interplays with Wolbachia and dengue virus infection in cells. J Virol. 2018 Jun 27;92(17):e00224-18. https://doi.org/10.1128/JVI.00224-18
- Provorov NA, Chuklina E, Vorob’ev NI, Onishchuk OP, Simarov BV. [Factor analysis of interactions between alfalfa nodule bacteria (Sinorhizobium meliloti) genes that regulate symbiotic nitrogen fixation] (in Russian). Genetika. 2013 Apr;49(4):448–453. https://doi.org/10.7868/s0016675813030156
- Sokolova MG, Akimova GP, Nechaeva LV, Permyakov AV, Sobenin AM. The effect of inoculation with Rhizobium leguminosarum on the contents of cytoplasmic protein and free amino acids in the roots of pea seedlings. Appl Biochem Microbiol. 2007 May;43(3):268–273. https://doi.org/10.1134/S0003683807030064
- Spaink HP. Root nodulation and infection factors produced by rhizobial bacteria. Annu Rev Microbiol. 2000 Oct;54(1):257–288. https://doi.org/10.1146/annurev.micro.54.1.257
- Taylor AB, Smith BS, Kitada S, Kojima K, Miyaura H, Otwinowski Z, Ito A, Deisenhofer J. Crystal structures of mitochondrial processing peptidase reveal the mode for specific cleavage of import signal sequences. Structure. 2001 Jul;9(7):615–625. https://doi.org/10.1016/S0969-2126(01)00621-9
- Vinson V. How a hydrogenase protects its active site. Science. 2017 Sep 01;357(6354);882–884. https://doi.org/10.1126/science.357.6354.882-n
- Vyatkina G, Bhatia V, Gerstner A, Papaconstantinou J, Garg N. Impaired mitochondrial respiratory chain and bioenergetics during chagasic cardiomyopathy development. Biochimica et Biophysica Acta (BBA) – Molecular Basis of Disease. 2004 Jun;1689(2): 162–173. https://doi.org/10.1016/j.bbadis.2004.03.005
- Wang F, Wang C, Sun Y, Wang N, Li X, Dong Y, Yao N, Liu X, Chen H, Chen X, et al. Overexpression of vacuolar proton pump ATPase (V-H+–ATPase) subunits B, C and H confers tolerance to salt and saline-alkali stresses in transgenic alfalfa (Medicago sativa L.). J Integr Agric. 2016 Oct;15(10):2279–2289. https://doi.org/10.1016/S2095-3119(16)61399-0
- Webb BA, Compton KK, Del Campo JSM, Taylor D, Sobrado P, Scharf BE. Sinorhizobium meliloti chemotaxis to multiple amino acids is mediated by the chemoreceptor McpU. Mol Plant Microbe Interact. 2017 Oct;30(10):770–777. https://doi.org/10.1094/MPMI-04-17-0096-R