Skip to main content
Have a personal or library account? Click to login
Microbial communities in a strongly anthropogenic affected stream Cover

Microbial communities in a strongly anthropogenic affected stream

Open Access
|Apr 2013

References

  1. Amann R. (1995): In situ identification of microorganisms by whole cell hybridization with rRNA-targered nucleic acid probes, pp. 3.3.6./1-3.3.6./15. In Akerman A. D. L., van El sas J. D. & de Brui jn F. J. (eds): Molecular Microbial Ecology Manual. Kluwer Academic Publisher, Dordrecht, Netherlands.
  2. Araya R., Tani K., Takagi T., Yamaguchi N. & Nasu M. (2003): Bacterial activity and community composition in stream water and biofilm from an urban river determined by fluorescence in situ hybridization and DGGE analysis. − FEMS Microbiol. Ecol. 43: 111-119.
  3. Balasté E. & Blanch A. R. (2010): Persistance of Bacteriodes species populations in a river as measured by molecular and culture techniques. − Appl. Environ. Microbiol. 76: 7608-7616.
  4. Baudišová D., Havel L. & Benáková A. (2008): The water quality in anthropogenically affected stream of Luzicka Nisa. Part 1 - Microbiological indicators. − VTEI 50(4/2008): 5-7.
  5. Bouvier T. & del Giorgio P.A. (2003): Factors influencing the detection of bacerial cells using fluorescence in situ hybridization (FISH): A quantitative review of published reports. − FEMS Microbiol. Ecol. 44:3-15.
  6. Brűmmer I. H. M., Fehr W. & Wagner-Dőbler I. (2000): Biofilm community Structure in Polluted rivers: Abundance of Dominant Phylogenetic groups over a Complete Annual Cycle. − Appl. Environ. Microbiol. 66(7): 3078-3082.
  7. Kildare B. J., Leutenegger C. M., McSwain B. S., Bambic D. G., Rajal V. B. & Wuer tz S. (2007): 16 S r RNA-based assays for quantitative detection of universal, human-, cow-, and dog specific fecal Bacteriodales. A Bayesian approach. − Wat. Res. 41(16): 3701-3715.
  8. Kirchmann D. L. (2002): The ecology of Cytophaga-Flavobacterium in aquatic environments. − FEMS Microbiol. Ecol. 39: 91-100.
  9. Loy A., Maixner F., Wagner M. & Horn M. (2007): ProbeBase - an online resource for rRNA-targeted oligonucleotide probes: New features. − Nucl. Acids Res. 35: 800-804.
  10. Neef A. (in litt): Anwendung der in situ Einzelzell-Identifizierung von Bakterien zur Populationsanalyse in komplexen mikrobiellen Biozönosen. (Ph.D. thesis). Technische Universität München, 1997.
  11. Nielsen P. H., Daims H. & Lemmer H. (2009): FISH handbook for biological wastewater treatment, identification and quantification of microorganisms in activated sludge and biofilms by FISH. IWA Publishing, London, UK, 123 pp.
  12. Manz W., Amann R., Ludwig W., Wagner M. & Schlei fer K.-H. (1992): Phylogenetic oligodeoxynucleotide probes for the major subclasses of Proteobacteria: problems and solutions. − Syst. Appl. Microbiol. 15: 593-600.
  13. Manz W., Amann R., Ludwig W., Vancanneyt M. & Schlei fer , K.-H. (1996): Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum Cytophaga- Flavobacter-Bacteroides in the natural environment. − Microbiology 142(5): 1097-1106.
  14. Mlejnková H. & Sovová K. (2010): Impact of pollution and seasonal changes on microbial community structure in surface water. − Wat. Sci. Tech. 61(11): 2787-2795.
  15. Raskin L., St romley J., M., Ri t tmann B. & E. & Stahl , D., A. (1994): Group-specific 16S rRNA hybridization probes to describe natural communities of methanogens. − Appl. Environ. Microbiol. 60: 1232-1240.
  16. Sekar R., Pernthaler A., Pernthaler J., Warnecke F., Posch T. & Amann R. (2003): An improved protocol for quantification of freshwater Actinobacteria by fluorescence in situ hybridisation. − Appl. Environ. Microbiol. 69(5): 2928-2935.
  17. Stahl D., A. & Amann., R. (1991): Development and application of nucleic acid probes, pp. 205-248. In E. Stackebrandt & M. Goodfel low (eds): Nucleic acid techniques in bacterial systematics. John Wiley & Sons Ltd., Chichester, England.
  18. Tirodimos I., Haidich A.B., Dar ravess i s T. & Arvani t idou M. (2009): River research and applications 10.1002/rra1301.
  19. Wagner M., Horn M., Daims H. (2003): Fluorescence in situ hybridisation for identification and characterisation of prokaryotes. − Current Opinion in Microbiology, 6:302-309.
DOI: https://doi.org/10.2478/v10210-012-0023-1 | Journal eISSN: 2336-3207 (formerly 1211-3026) | Journal ISSN: 2336-3193 (formerly 1211-3026)
Language: English, Czech
Page range: 229 - 236
Published on: Apr 17, 2013
Published by: Silesian Museum in Opava
In partnership with: Paradigm Publishing Services
Publication frequency: 3 issues per year

© 2013 Dana Baudišová, Andrea Benáková, published by Silesian Museum in Opava
This work is licensed under the Creative Commons License.