References
- Alessenko, A., Khan, W.A., Wetsel, W.C., Hannun, Y.A. (1992). Selective changes in protein kinase C isoenzymes in rat liver nuclei during liver regeneration. Biochem. Biophys. Res. Commun., 182(3), 1333-1339.10.1016/0006-291X(92)91879-U
- Avramova, Z., Tsanev, R. (1987). Stable DNA-protein complexes in eukaryotic chromatin. J. Mol. Biol., 196(2), 437-440.10.1016/0022-2836(87)90704-2
- Barnes, C.J., Li, F., Mandal, M., Yang, Z., Sahin, A.A., Kumar, R. (2002). Heregulin induces expression, ATPase activity, and nuclear localization of G3BP, a Ras signaling component, in human breast tumors. Cancer Res., 62(5), 1251-1255.
- Benore-Parsons, M., Ayoub, M.A. (1997). Presence of RNase A aberrant DNA band shifts. Biotechniques., 23(1), 128-131.10.2144/97231st04
- Bielskienė, K., Bagdonienė, L., Juodka, B., Lipinski, M., Sjakste, T., Vassetzky, Y.S., and Sjakste N. (2008). Transcription- and apoptosis-dependent long-range distribution of tight DNA-protein complexes in the chicken alpha globin gene. DNA Cell Biol., 27(11), 615-621.10.1089/dna.2008.0771
- Blum, H., Beier, H., Gross, J.H. (1987) Improved silver staining of plant proteins, RNA and DNA in polyacrilamide gels. Electrophoresis, 8, 93-9910.1002/elps.1150080203
- Cocco, L., Martelli, A.M., Vitale, M., Falconi, M., Barnabei, O., Stewart Gilmour, R., Manzoli, F.A. (2002). Inositides in the nucleus: Regulation of nuclear PI-PLCbeta1. Adv. Enzyme Regul., 42, 181-193.10.1016/S0065-2571(01)00030-9
- Collins, G.A., Tansey, W.P. (2006). The proteasome: A utility tool for transcription? Curr. Opin. Genet. Dev., 16(2), 197-202.10.1016/j.gde.2006.02.00916503126
- Connor, A.C., Frederick, K.A., Morgan, E.J., McGown, L.B. (2006). Insulin capture by an insulin-linked polymorphic region G-quadruplex DNA oligonucleotide. J. Amer. Chem. Soc., 128(15), 4986-4991.10.1021/ja056097c255650916608332
- Cruz, J.R., Moreno Díaz de la Espina, S. (2009). Subnuclear compart-mentalization and function of actin and nuclear myosin I in plants. Chromosoma., 118(2), 193-207.10.1007/s00412-008-0188-y18982342
- De Conto, F., Pilotti, E., Razin, S.V., Ferraglia, F., Geraud, G., Arcangeletti, C., Scherrer, K. (2000). In mouse myoblasts nuclear prosomes are associated with the nuclear matrix and accumulate preferentially in the perinucleolar areas. J. Cell Sci., 113(Pt 13), 2399-2407.10.1242/jcs.113.13.239910852819
- De Conto, F., Razin, S.V., Geraud, G., Arcangeletti, C., Scherrer, K. (1999). In the nucleus and cytoplasm of chicken erythroleukemic cells, prosomes containing the p23K subunit are found in centers of globin (pre-)mRNA processing and accumulation. Exp. Cell Res., 250(2), 569-575.10.1006/excr.1999.4556
- Fabian, L., Forer, A. (2007). Possible roles of actin and myosin during anaphase chromosome movements in locust spermatocytes. Protoplasma., 231(3-4), 201-213.10.1007/s00709-007-0262-y
- French, J., Stirling, R., Walsh, M., Kennedy, H.D. (2002). The expression of Ras-GTPase activating protein SH3 domain-binding proteins, G3BPs, in human breast cancers. Histochem. J., 34(5), 223-231.10.1023/A:1021737413055
- Glaser, T., Rothbarth, K., Stammer, H., Kempf, T., Spiess, E., Werner, D. (1997). A multifunctional protein: Involvement of the alpha-1 serum protease inhibitor in SDS and high salt-stable DNA-protein complexes. FEBS Lett., 413(1), 50-54.10.1016/S0014-5793(97)00876-4
- Hancock, R. (2004). Internal organisation of the nucleus: Assembly of compartments by macromolecular crowding and the nuclear matrix model. Biol. Cell., 96(8), 595-601.10.1016/j.biolcel.2004.05.00315519694
- Haraguchi, T., Kojidani, T., Koujin, T., Shimi, T., Osakada, H., Mori, C., Yamamoto, A., Hiraoka, Y. (2008). Live cell imaging and electron microscopy reveal dynamic processes of BAF-directed nuclear envelope assembly. J. Cell Sci., 121(Pt 15), 2540-2554.10.1242/jcs.03359718628300
- Harada, S., Smith, R.M., Jarett, L. (1999). Mechanisms of nuclear translocation of insulin. Cell Biochem. Biophys., 31(3), 307-319.10.1007/BF0273824510736753
- Hawker, J.R. Jr, Granger, H.J. (1994). Nuclear accumulation of exogenous basic fibroblast growth factor in endothelial, fibroblast, and myoblast cell lines results in diverse biological responses. In Vitro Cell Dev. Biol. Anim., 30A(10), 653-663.10.1007/BF026312687531096
- Holaska, J.M., Wilson, K.L. (2007). An emerin "proteome": Purification of distinct emerin-containing complexes from HeLa cells suggests molecular basis for diverse roles including gene regulation, mRNA splicing, signaling, mechanosensing, and nuclear architecture. Biochemistry., 46(30), 8897-8908.10.1021/bi602636m263512817620012
- Huston, E., Lynch, M.J., Mohamed, A., Collins, D.M., Hill, E.V., MacLeod, R., Krause, E., Baillie, G.S., Houslay, M.D. (2008). EPAC and PKA allow cAMP dual control over DNA-PK nuclear translocation. Proc. Natl. Acad. Sci. USA., 105(35), 12791-12796.10.1073/pnas.0805167105252905318728186
- Ioudinkova, E., Razin, S.V., Borunova V, de Conto F, Rynditch A, Scherrer K. (2005). RNA-dependent nuclear matrix contains a 33 kb globin full domain transcript as well as prosomes but no 26S proteasomes. J. Cell. Biochem., 94(3), 529-539.10.1002/jcb.20306
- Juodka, B., Pfütz, M., Werner, D. (1991) Chemical and enzymatic analysis of covalent bonds between peptides and chromosomal DNA. Nucleic Acids Res, 19, 6391-6398.10.1093/nar/19.23.6391
- Kahle, M., Pridalová, J., Spacek, M., Dzijak, R., Hozák, P. (2007). Nuclear myosin is ubiquitously expressed and evolutionary conserved in vertebrates. Histochem. Cell. Biol., 127(2), 139-148.10.1007/s00418-006-0231-0
- Kanouchi, H., Matsumoto, M., Taga, M., Yamada, K., Oka, T., Toné, S., Minatogawa, Y. (2005). Nuclear transfer of perchloric acid-soluble protein by endoplasmic reticulum stressors. Protein Sci., 14(9), 2344-2349.10.1110/ps.051481105
- Kulagina, T.P., Markevich, L.N., Kolomiytseva, I.K., Alessenko, A.V. (2003). Synthesis of lipids in isolated nuclei from rat thymus and liver cells. Biochemistry (Mosc)., 68 (5), 570-576.10.1023/A:1023911911137
- Kyselá, K., Philimonenko, A.A., Philimonenko, V.V., Janácek, J., Kahle, M., Hozák, P. (2005). Nuclear distribution of actin and myosin I depends on transcriptional activity of the cell. Histochem. Cell Biol., 124(5), 347-358.10.1007/s00418-005-0042-8
- Labeikytė, D., Bagdonienė, L., Sasnauskienė, S., Sabalauskienė V., Juodka, B. (2002). Covalent DNA-protein complexes in murine cells. Biologija, No. 2, 50-55.
- Labeikytė, D., Bagdonienė, L., Juodka, B. (1999). Investigation of tightly bound proteins from eukaryotic cells. Biologija, No. 4, 22-27.
- Lin, L., Zhang, J.H., Panicker, L.M., Simonds, W.F. (2008). The parafibromin tumor suppressor protein inhibits cell proliferation by repression of the c-myc proto-oncogene. Proc. Natl. Acad. Sci. USA, 105(45), 17420-17425.10.1073/pnas.0710725105
- Manning, K. (1991). Isolation of nucleic acids from plants by differential solvent precipitation. Anal. Biochem., 195, 45-50.10.1016/0003-2697(91)90292-2
- Martelli, A.M., Manzoli, L., Cocco, L. (2004) Nuclear inositides: Facts and perspectives. Pharmacol. Ther., 101(1), 47-64.10.1016/j.pharmthera.2003.10.00314729392
- Mellon, S.H., Bair, S.R., Depoix, C., Vigne, J.L, Hecht, N.B., Brake, P.B. (2007). Translin coactivates steroidogenic factor-1-stimulated transcription. Mol. Endocrinol., 21(1), 89-105.10.1210/me.2005-035517053042
- Mosimann, C., Hausmann, G., Basler, K. (2009). Beta-catenin hits chromatin: Regulation of Wnt target gene activation. Nat. Rev. Mol. Cell. Biol., 10(4), 276-286.10.1038/nrm265419305417
- Nag, A., Bondar, T., Shiv, S., Raychaudhuri, P. (2001). The xeroderma pigmentosum group e gene product ddb2 is a specific target of cullin 4a in mammalian cells. Mol. Cell Biol., 21(20), 6738-6747.10.1128/MCB.21.20.6738-6747.20019985211564859
- Nagel, D.J., Aizawa, T., Jeon, K.I., Liu, W., Mohan, A., Wei, H., Miano, J.M., Florio, V.A, Gao, P., Korshunov, V.A., Berk, B.C., Yan, C. (2006). Role of nuclear Ca2+/calmodulin-stimulated phosphodiesterase 1A in vascular smooth muscle cell growth and survival. Circ. Res., 98(6), 720-722.10.1161/01.RES.0000215576.27615.fd411476016514069
- Nehls, P., Keck, T., Greferath, R., Spiess, E., Glaser, T., Rothbarth, K., Stammer, H., Werner, D. (1998). cDNA cloning, recombinant expression and characterization of polypetides with exceptional DNA affinity. Nucleic Acids Res., 26, 1160-1166.10.1093/nar/26.5.11601473829469821
- Neuer-Nitsche, B., Lu, X., Werner, D. (1988). Functional role of a highly repetitive DNA sequences to anchorage of the mouse genome. Nucleic Acids Res., 16, 8351-8360.10.1093/nar/16.17.83513385633419921
- Nowak, G., Pestic-Dragovich, L., Hozák, P., Philimonenko, A., Simerly, C., Schatten, G., de Lanerolle, P. (1997). Evidence for the presence of myosin I in the nucleus. J. Biol. Chem., 272(27), 17176-17181.10.1074/jbc.272.27.171769202039
- Ordóñez-Morán, P., Muñoz, A. (2009). Nuclear receptors: Genomic and non-genomic effects converge. Cell Cycle., 8(11), 1675-1680.10.4161/cc.8.11.857919448403
- Pestic-Dragovich, L., Stojiljkovic, L., Philimonenko, A.A., Nowak, G., Ke, Y., Settlage, R.E., Shabanowitz, J., Hunt, D.F., Hozak, P., de Lanerolle, P. (2000). A myosin I isoform in the nucleus. Science, 290(5490), 337-341.
- Pfütz, M., Gileadi, O., Werner, D. (1992). Identification of human satellite DNA sequences associated with chemically resistant nonhistone polypeptide adducts. Chromosoma., 101, 607-617.10.1007/BF003605381424985
- Philimonenko, V.V., Zhao, J., Iben, S., Dingová, H., Kyselá, K., Kahle, M., Zentgraf, H., Hofmann, W.A., de Lanerolle, P., Hozák, P., Grummt, I. (2004). Nuclear actin and myosin I are required for RNA polymerase I transcription. Nat. Cell Biol., 6(12), 1165-1172.10.1038/ncb119015558034
- Ramoni, C., Spadaro, F., Barletta, B., Dupuis, M.L., Podo, F. (2004). Phosphatidylcholine-specific phospholipase C in mitogen-stimulated fibroblasts. Exp. Cell Res., 299(2), 370-382.10.1016/j.yexcr.2004.05.03715350536
- Razin, S.V., Chernokhvostov, V.V., Vassetzky, E.S. (1988). The distribution of tightly bound proteins along the DNA chain reflects the type of cell differentiation. Nucleic Acids Res., 16, 3617-3633.10.1093/nar/16.9.3617
- Rothbarth, K., Stammer, H., Werner, D. (2002). Proteasome-mediated degradation antagonizes critical levels of the apoptosis-inducing C1D protein. Cancer Cell Int., 2(1), 12.10.1186/1475-2867-2-12
- Seol, K.C., Kim, S.J. (2003). Nuclear matrix association of insulin receptor and IRS-1 by insulin in osteoblast-like UMR-106 cells. Biochem. Biophys. Res. Commun., 306(4), 898-904.10.1016/S0006-291X(03)01046-5
- Shevchenko, A., Wilm, M., Vorm, O., Mann, M. (1996). Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. Anal Chem., 68(5), 850-858.10.1021/ac950914h8779443
- Sjakste, T., Bielskiene, K., Röder, M., Sugoka, O., Labeikyte, D., Bagdoniene, L., Juodka, B., Vassetzky, Y., Sjakste, N. (2009). Development-dependent changes in the tight DNA-protein complexes of barley on chromosome and gene level. BMC Plant Biology., 9, 56.10.1186/1471-2229-9-56269440519435519
- Sjakste, N., Sjakste, T., Stacey, G., Bolton, B., Doyle, A. (1999). Distribution of tightly-bound proteins along the chicken alpha-globin gene. Proc. Latv. Acad. Sci. B., 53, 5-11.
- Sjakste, T., Röder, M., Labeikyte, D., Bagdoniene, L., Levina, A., Juodka, B., Sjakste, N. (2005). Distribution of tight DNA-protein complexes along the barley chromosome 1H, as revealed by microsatellite marker analysis. Cell. Mol. Biol. Lett., 10(1), 49-59.
- Su, J., Yang, C., Zhu, Z., Wang, Y., Jang, S., Liao, L. (2009). Enhanced grass carp reovirus resistance of Mx-transgenic rare minnow (Gobiocypris rarus).Fish Shellfish Immunol., 26(6), 828-835.10.1016/j.fsi.2008.12.00719138747
- Sun, T., Hunziker, E.B., Morales, T.I. (2008). Subcellular distribution of the insulin-like growth factor (IGF) binding proteins (IGFBPs) 2 and 3 in articular chondrocytes. J. Orthop. Res., 26(11), 1421-1427.10.1002/jor.2066018418889
- Sun, H., Tu, X., Prisco, M., Wu, A., Casiburi, I., Baserga, R. (2003). Insulin-like growth factor I receptor signaling and nuclear translocation of insulin receptor substrates 1 and 2. Mol. Endocrinol., 17(3), 472-486.10.1210/me.2002-027612554758
- Thompson, K.A., Soler, A.P., Smith, R.M., Jarett, L. (1989). Intranuclear localization of insulin in rat hepatoma cells: Insulin/matrix association. Eur. J. Cell. Biol., 50(2), 442-446.
- Tsanev, R., Avramova, Z. (1994). Stably-bound chromosomal proteins. Chromosoma, 103, 293-301.10.1007/BF004178767821084
- Werner, D., Neuer-Nitsche, B. (1989). Site-specific location of covalent DNA-polypeptide complexes in the chicken genome. Nucleic Acids Res., 17, 6005-6015.10.1093/nar/17.15.60053182562549504
- Werner, D., Rest, R. (1987). Sub-set characteristics of DNA sequences involved in tight DNA: Polypeptide complexes and their homology to nuclear matrix DNA. Biochem. Biophy. Res. Communs., 147, 340-345.10.1016/S0006-291X(87)80127-4