Have a personal or library account? Click to login
Comparative analysis of sweet cherry (P. avium) genetic diversity revealed by two methods of SSR marker detection Cover

Comparative analysis of sweet cherry (P. avium) genetic diversity revealed by two methods of SSR marker detection

Open Access
|Jan 2011

References

  1. Ahmad, R., Potter, D., Southwick, S. M. (2004). Identification and characterization of plum and plumcot cultivars by microsatellite markers. J. Hort. Sci. Biotechnol., 79, 164-169.10.1080/14620316.2004.11511743
  2. Aranzana, M. J., Cosson, P., Dirlewanger, E., Ascasibar, J., Cipriani, G., Arús, P., Testolin, R., Abbott, A., King, G. J., Iezzoni, A. F. (2003). A set of simplesequence repeat (SSR) markers covering the Prunus genome. Theor. Appl. Genet., 106, 819-825.10.1007/s00122-002-1094-y12647055
  3. Baránek, M., Raddová, J., Pidra, M. (2006). Comparative analysis of genetic diversity in Prunus L. as revealed by RAPD and SSR markers. Scientia Hort., 108, 253-259.10.1016/j.scienta.2006.01.023
  4. Beaver, J. A., Iezzoni, A. F., Ramm, C. W. (1995). Isozyme diversity in sour, sweet, and ground cherry. Theor. Appl. Genet., 90(6), 847-852.10.1007/BF0022202124172928
  5. Bianchi, V. J., Sansavini S., Fachinello J. C. (2004). Microsatellite markers for identification of Prunus spp. rootstocks. Scientia Agricola, 61(3), 303-306.10.1590/S0103-90162004000300011
  6. Callen, D. F., Thompson, A. D., Shen, Y., Phillips, H. A., Richards, R. I., Mulley, J. C., Sutherland, G. R. (1993). Incidence and origin of "null" alleles in the (AC)n microsatellite markers. Amer. J. Hum. Genet., 52, 922-927.
  7. Cantini, C., Iezzoni, A. F., Lamboy, W. F., Boritzki, M., Struss, D. (2001). DNA fingerprinting of tetraploid cherry germplasm using simple sequence repeats. J. Amer. Soc. Hort. Sci., 126, 205-209.10.21273/JASHS.126.2.205
  8. Dirlewanger, E., Cosson, P., Tavaud, M., Aranzana, M. J., Poizat, C., Zanetto, A., Arśs, P., Laigret, F. (2002). Development of microsatellite markers in peach [Prunus persica (L.) Batsch] and their use in genetic diversity analysis in peach and sweet cherry (Prunus avium L.). Theor. Appl. Genet., 105, 127-138.10.1007/s00122-002-0867-712582570
  9. Excoffier, L. Laval, G., Schneider, S. (2005). Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 47-50.
  10. Gerlach, H. K., Stosser, R., Ystaas, J. (1997). Sweet cherry cultivar identification using RAPD-derived DNA fingerprints. Acta Hort., 468, 63-69.
  11. Goulćo, L., Monte-Corvo, L., Oliveira, C. M. (2001). Phenetic characterization of plum cultivars by high multiplex ratio markers: Amplified fragment length polymorphisms and inter-simple sequence repeats. J. Amer. Soc. Hort. Sci., 126(1), 72-77.10.21273/JASHS.126.1.72
  12. Granger, A. R. (1996). Inheritance and linkage of isozymes in sweet cherry (Prunus avium L.). Theor. Appl. Genet., 93(3), 426-430.10.1007/BF0022318624162301
  13. Hampl, V., Pavlicek, A., Flegr, J. (2001). Construction and bootstrap analysis of DNA fingerprinting-based phylogenetic trees with a freeware program FreeTree: Application to trichomonad parasites. Int. J. Syst. Evol. Microbiol., 51, 731-735.10.1099/00207713-51-3-73111411692
  14. Höltken, A. M., Gregorius, H. R. (2006). Detecting local establishment strategies of wild cherry (Prunus avium L.). BMC Ecology, 6, 13. DOI: 10.1186/1472-6785-6-13.10.1186/1472-6785-6-13160909917020607
  15. Kacar, Y. A., Iezzoni, A., Cetiner, S. (2005). Sweet cherry cultivar identification by using SSR markers. J. Biol. Sci., 5(5), 616-619.10.3923/jbs.2005.616.619
  16. Lacis, G., Kaufmane, E., Rashal, I., Trajkovski, V., Iezzoni, A. F. (2008). Identification of self-incompatibility (S) alleles in Latvian and Swedish sweet cherry genetic resources collections by PCR based typing. Euphytica, 160, 155-163.10.1007/s10681-007-9496-1
  17. Lacis, G., Kaufmane, E., Trajkovski, V. & Rashal I. (2009a). Morphological variability and genetic diversity within Latvian and Swedish sweet cherry collections. Acta Univ. Latviensis, 753, 19-32.
  18. Lacis, G., Rashal, I., Ruisa, S., Trajkovski, V., Iezzoni, A. F. (2009b). Assessment of genetic diversity of Latvian and Swedish sweet cherry (Prunus avium L.) genetic resources collections by using SSR (microsatellite) markers. Scientia Hort., 121, 451-457.10.1016/j.scienta.2009.03.016
  19. Lamboy, W. F., Alpha, C. G. (1998). Using simple sequence repeats (SSRs) for fingerprinting germplasm accessions of grape (Vitis L.) species, J. Amer. Soc. Hortic. Sci., 123, 182-188.10.21273/JASHS.123.2.182
  20. Nei, M., Li, W. H. (1979). Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc. Natl. Acad. Sci. U. S. A., 76, 3269-3273.10.1073/pnas.76.10.5269413122291943
  21. Nybom, H., Schaal, B. A. (1990). DNA ‘fingerprints’ reveal genotypic distributions in natural populations of blackberries and raspberries (Rubus, Rosaceae). Amer. J. Botany, 44, 883-888.10.1002/j.1537-2197.1990.tb15183.x
  22. Ohta, S., Katsuki, T., Tanaka, T., Hayashi, T., Sato, Y. I., Yamamoto, T. (2005). Genetic variation in flowering cherries (Prunus subgenus Cerasus) characterized by SSR markers. Breeding Sci., 55, 415-424.10.1270/jsbbs.55.415
  23. Panda, S., Martín, J. P. & Aguinagalde, I. (2003). Chloroplast DNA study in sweet cherry cultivars (Prunus avium L.) using PCR-RFLP method. Gen. Res. Crop Evol., 50, 489-495.10.1023/A:1023986416037
  24. Peakall, R., Smouse, P. E. (2006). GENALEX 6: Genetic analysis in Excel. Population genetic software for teaching and research. Mol. Ecology Notes, 6, 288-295.10.1111/j.1471-8286.2005.01155.x
  25. Pedersen, B. H. (2006). DNA fingerprints of 51 sweet and sour Prunus accessions using Simple Sequence Repeats. J. Hort. Sci. Biotechnol., 81(1), 118-124.10.1080/14620316.2006.11512037
  26. Ricciardi, L., Giorgio, V., de Giovanni, C., Lotti, C., Gallotta, A., Fanizza, G. (2002). The genetic diversity of Apulian apricot genotypes (Prunus armeniaca L.) assessed using AFLP markers. Cell. Mol. Biol. Lett., 7, 431-436.
  27. Ruisa, S. (1998). Genetic resources of Latvian sweet cherries and their use. Acta Hort., 468, 153-160.10.17660/ActaHortic.1998.468.17
  28. Sánchez-Pérez, R., Ruiz, D., Dicenta, F., Egea, J., Martínez-Gómez, P. (2005). Application of simple sequence repeat (SSR) markers in apricot breeding: Molecular characterization, protection, and genetic relationships. Scientia Hort., 103, 305-315.10.1016/j.scienta.2004.06.009
  29. Sánchez-Pérez, R., Ballester, J., Dicenta, F., Arús, P., Martínez-Gómez, P. (2006). Comparison of SSR polymrphisms using automated capillary sequencers, and polyacrylamide and agarose gel electrophoresis: Implications for the assessment of genetic diversity and relatedness in almond. Scientia Hort., 108(3), 310-316.10.1016/j.scienta.2006.02.004
  30. Schueler, S., Tusch, A., Schuster, M., Ziegenhangen, B. (2003). Characterization of microsatellites in wild and sweet cherry (Prunus avium L.) — markers for individual identification and reproductive processes. Genome, 46, 95-102.10.1139/g02-10712669801
  31. Stockinger, E. J., Mulinix, C. A., Long, C. M., Brettin, T. S., Iezzony, A. F. (1996). A linkage map of sweet cherry based on RAPD analysis of a microspore-derived callus culture population. J. Heredity, 37, 214-218.10.1093/oxfordjournals.jhered.a0229878683097
  32. Tamura, K., Dudley, J., Nei, M., Kumar, S. (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24, 1596-1599.10.1093/molbev/msm09217488738
  33. Trajkovski, V. (1996). A review of the cherry breeding program in Sweden. Acta Hort., 410, 387-388.10.17660/ActaHortic.1996.410.61
  34. Vaughan, S. P., Russell, K. (2004). Characterization of novel microsatellites and development of multiplex PCR for large-scale population studies in wild cherry, Prunus avium. Mol. Ecology Notes, 4, 429-431.10.1111/j.1471-8286.2004.00673.x
  35. Wünsch, A., Hormaza, J. I. (2002a). Molecular characterisation of sweet cherry (Prunus avium L.) genotypes using peach [Prunus persica (L.) Batsch] SSR sequences. Heredity, 89, 56-63.10.1038/sj.hdy.680010112080370
  36. Wünsch, A., Hormaza, J. I. (2002b). Cultivar identification and genetic fingerprinting of temperate fruit tree species using DNA markers. Euphytica, 125, 56-67.10.1023/A:1015723805293
  37. Wünsch, A., Hormaza, J. I. (2004). Molecular evaluation of genetic diversity and S-allele composition of local Spanish sweet cherry (Prunus avium L.) cultivars. Gen. Res. Crop Evol., 51, 635-641.10.1023/B:GRES.0000024649.06681.43
DOI: https://doi.org/10.2478/v10046-010-0024-7 | Journal eISSN: 2255-890X | Journal ISSN: 1407-009X
Language: English
Page range: 149 - 158
Published on: Jan 25, 2011
In partnership with: Paradigm Publishing Services
Publication frequency: 6 issues per year

© 2011 Gunārs Lācis, Isaak Rashal, Viktor Trajkovski, published by Latvian Academy of Sciences
This work is licensed under the Creative Commons License.

Volume 64 (2010): Issue 3-4 (August 2010)