Ruby vs. Perl – the Languages of Bioinformatics
Open Access
|Dec 2013References
- Aerts, J., & Law, A. (2009). An introduction to scripting in Ruby for biologists. BMC Bioinformatics, 10(221), Retrieved July 30, 2013, from BioMed Central: http://www.biomedcentral.com/1471-2105/10/221.DOI:10.1186/1471-2105-10-221.
- Baxevanis, A. D., & Ouellette, B. F. F. (2004). Bioinformatics: a practical guide to the analysis of genes and proteins. USA: Wiley-Interscience.
- BioPerl (2012). Retrieved July 30, 2013 from http://www.bioperl.org/.
- BioRuby (2013). Retrieved July 30, 2013 from http://www.bioruby.org/.
- Foy, B. (2007). Mastering Perl (2nd ed.). USA: O’Reilly Media.
- Goto, N., Prins, P., Nakao, M., Bonnal, R., Aerts, J., & Katayama, T. (2009).
- BioRuby: Bioinformatics software for the Ruby programming language. Bioinformatics, 26(20), 2617-2619. DOI: 10.1093/bioinformatics/btq475.
- Moorhouse, M., & Barry, P. (2004). Bioinformatics, Biocomputing and Perl: an introduction to bioinformatics computing skills and practice, USA: Wiley.
- National Center for Biotechnology Information, U.S. National Library of Medicine. (1998). Homo sapiens myosin heavy chain IIx/d mRNA, complete cds. Retrieved July 30, 2013, from http://www.ncbi.nlm.nih.gov/nuccore/4808814?report=genbank#sequence 4808814.
- National Center for Biotechnology Information, U.S. National Library of Medicine. (2001). Homo sapiens 43kDa acetylcholine receptor-associated protein (RAPSN) mRNA, complete cds. Retrieved July 30, 2013, from http://www.ncbi.nlm.nih.gov/nuccore/19310212?report=genbank.
- National Center for Biotechnology Information, U.S. National Library of Medicine. (2006). Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome. Retrieved July 30, 2013, from http://www.ncbi.nlm.nih.gov/nuccore/30407139?report=fasta.
- National Center for Biotechnology Information, U.S. National Library of Medicine. (2009). Retrieved July 30, 2013, from http://www.ncbi.nlm.nih.gov/gen bank/.
- Schwartz, R., & Phoenix, T. (2011). Learning Perl. USA: O’Reilly Media.
- Stajich, J. E., Block, D., Boulez, K., Brenner, S., Chervitz, S., Dagdigian, C., Fuellen, G., Gilbert, J. Korf, I., Lapp, H., Lehväslaiho, H., Matsalla, C., Mungall, C. J., Osborne, B. I., Pocock, M. R., Schattner, P., Senger, M., Stein, L. D., Stupka, E., Wilkinson, M. D., & Birney, E. (2002). The BioPerl Toolkit: Perl modules for the life sciences. Genome Research, 12(10), 1611-1618. DOI: 10.1101/gr.361602.
- Thomas, D., Fowler, Ch., & Hunt, A. (2009). Programming Ruby 1.9: the pragmatic programmers’ guide. USA: Pragmatic Bookshelf.
- Tisdall, J. (2001). Beginning Perl for bioinformatics. USA: O’Reilly Media.
DOI: https://doi.org/10.2478/slgr-2013-0032 | Journal eISSN: 2199-6059 (formerly 0860-150X) | Journal ISSN: 0860-150X
Language: English
Page range: 143 - 155
Published on: Dec 31, 2013
Published by: University of Białystok
In partnership with: Paradigm Publishing Services
Related subjects:
© 2013 Maciej Goliński, Agnieszka Kitlas Golińska, published by University of Białystok
This work is licensed under the Creative Commons License.