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Patterns of genetic variation and the potential origin of sweet chestnut (Castanea sativa Mill.) stands far from its natural northern distribution edge

Open Access
|Jan 2024

References

  1. Alcaide F, Solla A, Mattioni C, Castellana S, Martín MÀ (2019) Adaptive diversity and drought tolerance in Castanea sativa assessed through EST-SSR genic markers. Forestry 92(3): 287–296. https://doi.org/10.1093/forestry/cpz007
  2. Alessandri S, Cabrer AMR, Martín MÁ, Mattioni C, Pereira-Lorenzo S, Dondini L (2022) Genetic characterization of Italian and Spanish wild and domesticated chestnut trees. Scientia Horticulturae 295: 1–28. https://doi.org/10.1016/j.scienta.2022.110882
  3. Barrandeguy ME, García MV (2021) The sensitiveness of expected heterozygosity and allelic richness estimates for analyzing population genetic diversity. In: Trindade MR and CM de Araújo (eds) Genetic Variation. IntechOpen, ISBN 978-1-83881-097-9. https://doi.org/10.5772/intechopen.95585
  4. Bouffartigue C, Debille S, Fabreguettes O, Cabrer AR, Pereira-Lorenzo S, Flutre T,L Harvengt L (2020) Two main genetic clusters with high admixture between forest and cultivated chestnut (Castanea sativa Mill.) in France. Annals of Forest Science. Annals of Forest Science 77(3). https://doi.org/10.1007/s13595-020-00982-w
  5. Buck EJ, Hadonou M, James CJ, Blakesley D, Russell K (2003) Isolation and characterization of polymorphic microsatellites in European chestnut (Castanea sativa Mill.). Molecular Ecology Notes 3(2): 239–241. https://doi.org/10.1046/j.1471-8286.2003.00410.x
  6. Castellana S, Martín MÀ, Solla A, Alcaide F, Villani F, Cherubini M, Neale D, Mattioni C (2021) Signatures of local adaptation to climate in natural populations of sweet chestnut (Castanea sativa Mill.) from southern Europe. Annals of Forest Science 78(2). https://doi.org/10.1007/s13595-021-01027-6
  7. Caudullo G, Welk E, San-Miguel-Ayanz J (2017) Chorological maps for the main European woody species. Data in Brief 12: 662-666. https://doi.org/10.1016/j.dib.2017.05.007
  8. Chen Z, Grossfurthner L, Loxterman JL, Masingale J, Richardson BA, Seaborn T, Smith B, Waits LP, Narum SR (2022) Applying genomics in assisted migration under climate change: Framework, empirical applications, and case studies. Evolutionary Applications 15(1): 3–21. https://doi.org/10.1111/eva.13335
  9. Chiocchini F, Mattioni C, Pollegioni P, Lusini I, Martín MÀ, Cherubini M, Lauteri M, Villani F (2016) Mapping the genetic diversity of Castanea sativa: exploiting spatial analysis for biogeography and conservation studies. Journal of Geographic Information System 08:248–259.
  10. Conedera M, Manetti MC, Giudici F, Amorini E (2004) Distribution and economic potential of the sweet chestnut (Castanea sativa Mill.) in Europe. Ecologia mediterranea 30(2): 179–193. https://doi.org/10.3406/ecmed.2004.1458
  11. Conedera M, Tinner W, Krebs P, de Rigo D, Caudullo G (2016) Castanea sativa in Europe: distribution, habitat, usage and threats. In: San-Miguel-Ayanz J, D de Rigo, G Caudullo, T Houston Durrant and A Mauri (eds.), European atlas of forest tree species. Publications Office of the European Union, Luxembourg, pp. 78-79 ISBN 978-92-76-17290-1
  12. Durand J, Bodénès C, Chancerel E, Frigerio JM, Vendramin G, Sebastiani F, Buonamici A, Gailing O, Koelewijn HP, Villani F, Mattioni C, Cherubini M, Goicoechea PG, Herrán A, Ikaran Z, Cabané C, Ueno S, Alberto F, Dumoulin PY, Guichoux E, de Daruvar A, Kremer A, Plomion C (2010) A fast and cost-effective approach to develop and map EST-SSR markers: Oak as a case study. BMC Genomics 11(1). https://doi.org/10.1186/1471-2164-11-570
  13. Faust K, Fussi B (2009) Genetik und Vermehrungsgut der Esskastanie. LWF Wissen 81: 14–19
  14. Fernández-Cruz J, Fernández-López J (2012) Morphological, molecular and statistical tools to identify Castanea species and their hybrids. Conservation Genetics 13(6): 1589–1600. https://doi.org/10.1007/s10592-012-0408-0
  15. Goudet J, Jombart T (2015) hierfstat: Estimation and tests of hierarchical F-statistics. R package version 0.04-22. R package version 0.04-22
  16. Hartig F (2022) DHARMa: Residual diagnostics for hierarchical (multi-Level/mixed) regression models. R package version 0.4.6. https://CRAN.R-project.org/package=DHARMa
  17. Hosius B, Leinemann L, Konnert M, Bergmann F (2006) Genetic aspects of forestry in the central Europe. European Journal of Forest Research 125(4): 407–417. https://doi.org/10.1007/s10342-006-0136-4
  18. Huntley B, Birks HJB (1983) An atlas of past and present pollen maps for Europe: 0-13000 Years Ago Cambridge University Press
  19. Janfaza S, Yousefzadeh H, Hosseini Nasr SM, Botta R, Asadi Abkenar A, Marinoni DT (2017) Genetic diversity of castanea sativa an endangered species in the hyrcanian forest. Silva Fennica 51(1): 1–15. https://doi.org/10.14214/sf.1705
  20. Kamvar ZN, Brooks JC, Grünwald NJ (2015a) Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality. Front Genet 6: 1–10. https://doi.org/10.3389/fgene.2015.00208.
  21. Kamvar ZN, Tabima JF, Brooks JC, Grunwald NJ (2015b) Genetic analysis of populations with mixed reproduction Package ‘ poppr ’.
  22. Kim JS, Kim KA, Oh TR, Park CM, Kang H (2008) Functional characterization of DEAD-Box RNA helicases in Arabidopsis thaliana under abiotic stress conditions. Plant and Cell Physiology 49(10): 1563–1571. https://doi.org/10.1093/pcp/pcn125
  23. Kleber A, Reiter P, Ehrhart H-P, Matthes U (2020) Steckbriefe Ergänzende Baumarten. FAWF/RLP Kompetenzzentrum für Klimawandelfolgen. https://www.klimawandel-rlp.de/fileadmin/website/klimakompetenzzentrum/Klimawandelinformationssystem/Handlungsfelder/Wald/Ergaenzende_Baumarten/CASA_Steckbrief.pdf.
  24. Kopelman NM, Mayzel J, Jakobsson M, Rosenberg NA, Mayrose I (2015) Clump-ak: A program for identifying clustering modes and packaging population structure inferences across K. Molecular Ecology Resources 15(5): 1179–1191. https://doi.org/10.1111/1755-0998.12387
  25. Krebs P, Pezzatti GB, Beffa G, Tinner W, Conedera M (2019) Revising the sweet chestnut (Castanea sativa Mill.) refugia history of the last glacial period with extended pollen and macrofossil evidence. Quaternary Science Reviews 206: 111–128. https://doi.org/10.1016/j.quascirev.2019.01.002
  26. Li YL, Liu JX (2018) StructureSelector: A web-based software to select and visualize the optimal number of clusters using multiple methods. Molecular Ecology Resources 18(1): 176–177. https://doi.org/10.1111/1755-0998.12719
  27. Lusini I, Velichkov I, Pollegioni P, Chiocchini F, Hinkov G, Zlatanov T, Cherubini M, Mattioni C (2014) Estimating the genetic diversity and spatial structure of Bulgarian Castanea sativa populations by SSRs: Implications for conservation. Conservation Genetics 15(2): 283–293. https://doi.org/10.1007/s10592-013-0537-0
  28. Macovei A, Vaid N, Tula S, Tuteja N (2012) A new DEAD-box helicase ATP-binding protein (OsABP) from rice is responsive to abiotic stress. Plant Signaling and Behavior 7(9): 1138–1143. https://doi.org/10.4161/psb.21343
  29. Marinoni D, Akkak A, Bounous G, Edwards KJ, Botta R (2003) Development and characterization of microsatellite markers in Castanea sativa (Mill.). Molecular Breeding 11(2): 127–136. https://doi.org/10.1023/A:1022456013692
  30. Martin MA, Mattioni C, Cherubini M, Taurchini D, Villani F (2010) Genetic diversity in European chestnut populations by means of genomic and genic microsatellite markers. Tree Genetics and Genomes 6(5): 735–744. https://doi.org/10.1007/s11295-010-0287-9
  31. Mattioni C, Martin MÀ, Pollegioni R, Cherubini M, Villani F (2013) Microsatellite markers reveal a strong geographical structure in European populations of Castanea sativa (Fagaceae): Evidence for multiple glacial refugia. American Journal of Botany 100(5): 951–961. https://doi.org/10.3732/ajb.1200194
  32. Mattioni C, Martin MÀ, Chiocchini F, Cherubini M, Gaudet M, Pollegioni P, Velichkov I, Jarman R, Chambers FM, Paule L, Damian VL, Crainic GC, Villani F (2017) Landscape genetics structure of European sweet chestnut (Castanea sativa Mill): indications for conservation priorities. Tree Genetics & Genomes 13(2): 39. https://doi.org/10.1007/s11295-017-1123-2
  33. Mattioni C, Ranzino L, Cherubini M, Leonardi L, La Mantia T, Castellana S, Villani F, Simeone MC (2020) Monuments unveiled: Genetic characterization of large old chestnut (Castanea sativa Mill.) trees using comparative nuclear and chloroplast DNA analysis. Forests 11(10): 1–20. https://doi.org/10.3390/f11101118
  34. Peakall R, Smouse PE (2012) GenALEx 6.5: Genetic analysis in Excel. Population genetic software for teaching and research-an update. Bioinformatics 28(19): 2537–2539. https://doi.org/10.1093/bioinformatics/bts460
  35. Pereira-Lorenzo S, Ramos-Cabrer AM, Barreneche T, Mattioni C, Villani F, Díaz-Hernández MB, Martín LM, Martín À (2017) Database of European chestnut cultivars and definition of a core collection using simple sequence repeats. Tree Genetics & Genomes 13(5). https://doi.org/10.1007/s11295-017-1197-x
  36. Pettenkofer T, Finkeldey R, Müller M, Krutovsky KV, Vornam B, Leinemann L, Gailing O (2020) Genetic variation of introduced red oak (Quercus rubra) stands in Germany compared to North American populations. European Journal of Forest Research 139(2): 321–331. https://doi.org/10.1007/s10342-019-01256-5
  37. Poljak I, Idžojtić M, Šatović Z et al. (2017) Genetic diversity of the sweet chestnut (Castanea sativa Mill.) in Central Europe and the western part of the Balkan Peninsula and evidence of marron genotype introgression into wild populations. Tree Genetics & Genomes 13, 18 https://doi.org/10.1007/s11295-017-1107-2
  38. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945–959. https://doi.org/10.1111/j.1471-8286.2007.01758.x
  39. Puechmaille SJ (2016) The program STRUCTUR does not reliably recover the correct population structure when sampling is uneven: subsampling and new estimators alleviate the problem. Molecular Ecology Resources 16(3): 608–627. https://doi.org/10.1111/1755-0998.12512
  40. R Core Team (2021) A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. https://www.R-project.org/
  41. Roces-Díaz JV, Jiménez-Alfaro B, Chytrý M, Díaz-Varela ER, Álvarez-Álvarez P (2018) Glacial refugia and mid-Holocene expansion delineate the current distribution of Castanea sativa in Europe. Palaeogeography, Palaeoclimatology, Palaeoecology 491: 152–160. https://doi.org/10.1016/j.palaeo.2017.12.004
  42. Tourvas N (2023) PopGenUtils: A collection of useful functions to deal with genetic data in R. R package version 0.1.8.
  43. Thurm EA, Werning M, Nagel R (2022) Tsuga und Thuja als Nadelholz-Alternativen im Klimawandel? - Standörtliches und waldwachstumskundliches Potential der westlichen Hemlocktanne und des Riesenlebensbaums in Deutschland. In: Nagel R, Schmidt M (eds) Tagungsband 2022: Deutscher Verband Forstlicher Forschungsanstalten. Sektion Ertragskunde. online Jahrestagung 2022.pp 138–152.
  44. Thurm EA, Heitz R (2018) Anbaueignung der Edelkastanie in Deutschland. LWF Wissen 81: 31–40
  45. Thurm EA, Hernandez L, Baltensweiler A, Ayan S, Rasztovits E, Bielak K, Zlatanov TM, Hladnik D, Balic B, Freudenschuss A, Büchsenmeister R, Falk W (2018) Alternative tree species under climate warming in managed European forests. Forest Ecology and Management 430: 485–497. https://doi.org/10.1016/j.foreco.2018.08.028
  46. Vashisht AA, Tuteja N (2006) Stress responsive DEAD-box helicases: A new pathway to engineer plant stress tolerance. Journal of Photochemistry and Photobiology B: Biology 84(2): 150–160. https://doi.org/10.1016/j.jphotobiol.2006.02.010
  47. Wood SN (2017) Generalized Additive Models: An Introduction with R (2nd edition). Chapman and Hall/CRC.Zhang L, Wu S, Chang X, Wang X, Zhao Y, Xia Y, Trigiano RN, Jiao Y, Chen F (2020) The ancient wave of polyploidization events in flowering plants and their adaptation to environmental stress. Plant Cell Environ 2020:1-10. https://doi.org/10.1111/pce.13898
DOI: https://doi.org/10.2478/sg-2023-0020 | Journal eISSN: 2509-8934 | Journal ISSN: 0037-5349
Language: English
Page range: 200 - 210
Published on: Jan 27, 2024
Published by: Johann Heinrich von Thünen Institute
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year

© 2024 Oliver Caré, Oleksandra Kuchma, Bernhard Hosius, Wolfgang Voth, Eric A. Thurm, Ludger Leinemann, published by Johann Heinrich von Thünen Institute
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.