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Usage of microsatellite markers for characterization of polyploids: a case study in reference to hexaploid bamboo species Cover

Usage of microsatellite markers for characterization of polyploids: a case study in reference to hexaploid bamboo species

Open Access
|Aug 2020

References

  1. Bhandawat A, Sharma V, Sharma H, Sood A, Sharma RK (2014) Development and crosstransferability of functionally relevant micro-satellite markers in Dendrocalamus latiflorus and related bamboo species. J. Genet. 93: e48-55. https://doi.org/10.1007/s12041-014-0377-910.1007/s12041-014-0377-9
  2. Bhandawat A, Sharma V, Singh P, Seth R, Nag A, Kaur J, Sharma RK (2019) Discovery and Utilization of EST-SSR Marker Resource for Genetic Diversity and Population Structure Analyses of a Subtropical Bamboo, Dendrocalamus hamiltonii. Biochem Genet. 57(5):652-672. https://doi.org/10.1007/s10528-019-09914-410.1007/s10528-019-09914-430953244
  3. Bhandawat A, Singh G, Raina AS, Kaur J, Sharma RK (2015) Development of genic SSR marker resource from RNASeq data in Dendrocalamus latiflorus. J. Plant Biochem. Biotechnol 25:179-190. https://doi.org/10.1007/s13562-015-0323-910.1007/s13562-015-0323-9
  4. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol. Ecol. 14(8): 2611-2620. https://doi.org/10.1111/j.1365-294X.2005.02553.x10.1111/j.1365-294X.2005.02553.x15969739
  5. Garcia-Verdugo C, Calleja JA, Vargas P, Silva L, Moreira O, Pulido F (2013) Polyploidy and microsatellite variation in the relict tree Prunus lusitanica L.: how effective are refugia in preserving genotypic diversity of clonal taxa? Mol. Ecol. 22(6):1546-1557. https://doi.org/10.1111/mec.1219410.1111/mec.1219423379976
  6. Guo ZH, Ma PF, Yang GQ, et al. (2019) Genome Sequences Provide Insights into the Reticulate Origin and Unique Traits of Woody Bamboos. Mol. Plant. 12(10): 1353-1365. https://doi.org/10.1016/j.molp.2019.05.00910.1016/j.molp.2019.05.00931145999
  7. Meena RK, Bhandhari MS, Barthwal S, Ginwal HS (2019) Genetic diversity and structure of Dendrocalamus hamiltonii natural metapopulation: a commercially important bamboo species of northeast Himalayas. 3 Biotech 9: 60. https://doi.org/10.1007/s13205-019-1591-110.1007/s13205-019-1591-1635615230729084
  8. Obbard DJ, Harris SA, Pannell JR (2006) Simple allelic-phenotype diversity and differentiation statistics for allopolyploids. Heredity (Edinb) 97:296-303. https://doi.org/10.1038/sj.hdy.680086210.1038/sj.hdy.680086216823402
  9. Peakall R, Smouse PE (2012) GenAlEx 6.5: genetic analysis in Excel. Population genetics software for teaching and research-an update. Bioinformatics 28(19): 2537-2539. https://doi.org/10.1093/bioinformatics/bts46010.1093/bioinformatics/bts460346324522820204
  10. Pfeiffer T, Roschanski AM, Pannell JR, Korbecka G, Schnittler M (2011) Characterization of microsatellite loci and reliable genotyping in a polyploid plant, Mercurialis perennis (Euphorbiaceae). J. Hered. 102: 479-88. https://doi.org/10.1186/s13104-017-2700-z10.1186/s13104-017-2700-z555379928797302
  11. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155(2): 945–959.10.1093/genetics/155.2.945146109610835412
  12. Sampson JF, Byrne M (2012) Genetic diversity and multiple origins of polyploidy Atriplex nummularia Lindl. (Chenopodiaceae). Biol. J. Linn. Soc. 105:218-230. https://doi.org/10.1111/j.1095-8312.2011.01787.x10.1111/j.1095-8312.2011.01787.x
  13. Teixeira H, Rodrıguez-Echeverrıa S, Nabais C (2014) Genetic Diversity and Differentiation of Juniperus thurifera in Spain and Morocco as determined by SSR. PLoS ONE 9(2): e88996. https://doi.org/10.1371/journal.pone.008899610.1371/journal.pone.0088996392306224533164
  14. Thakur A, Barthwal S, Ginwal HS (2015) Genetic diversity in bamboos: conservation and improvement for productivity. In Kaushik S, Singh YP, kumar D, Thapaliyal M and Barthwal S (eds) Bamboos in India (ed.), ENVIS Centre on Forestry, Dehradun, pp. 131-146.
  15. Van Dijk T, Noordijk Y, Dubos T, Bink MCAM, Meulenbroek BJ, Visser RGF, Van de Weg E (2012) Microsatellite allele dose and configuration establishment (MADCE): an integrated approach for genetic studies in allopolyploids. BMC Plant Biol. 12: 25. https://doi.org/10.1186/1471-2229-12-2510.1186/1471-2229-12-25333838322340438
  16. Yeh FC, Yang RC, Boyles TBJ, Ye ZH, Mao JX (1999) POPGENE Version 1.32: Microsoft Window-Based Freeware for Population Genetics Analysis, Molecular Biology and Biotechnology Centre, University of Alberta, Edmonton
DOI: https://doi.org/10.2478/sg-2020-0013 | Journal eISSN: 2509-8934 | Journal ISSN: 0037-5349
Language: English
Page range: 94 - 97
Published on: Aug 24, 2020
Published by: Johann Heinrich von Thünen Institute
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year

© 2020 Rajendra K. Meena, Maneesh S. Bhandari, Harish S. Ginwal, published by Johann Heinrich von Thünen Institute
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.