Have a personal or library account? Click to login
Cloning and Molecular Evolution Analysis of NBS Class Resistance Gene Analogs in Black Bamboo (Phyllostachys nigra) Cover

Cloning and Molecular Evolution Analysis of NBS Class Resistance Gene Analogs in Black Bamboo (Phyllostachys nigra)

Open Access
|Dec 2018

References

  1. Aarts N, Metz M, Holub E, Staskawicz BJ, Daniels MJ, Parker JE (1998) Different requirements for EDS1 and NDR1 by disease resistance genes define at least two R gene-mediated signaling pathways in Arabidopsis[J]. Proc Natl Acad Sci USA 95(17):10306-10311. https://doi.org/10.1073/pnas.95.17.1030610.1073/pnas.95.17.10306215049707643
  2. Bent AF, Kunkel BN, Dahlbeck D, Brown KL, Schmidt R, Giraudat J, Leung J, Stas­kawicz BJ (1994) RPS2 of Arabidopsis thaliana: a leuine-rich repeat class of plant disease resistance genes[J]. Science 265(5180):1856-1860 https://doi.org/10.1126/science.809121010.1126/.8091210
  3. Deyoung BJ, Innes RW (2006) Plant NBS-LRR proteins in pathogen sensing and host defense[J]. Nature Immunol 7(12):1243−1249 https://doi.org/10.1038/ni141010.1038/ni1410197315317110940
  4. Gregory B Martin, Adam J Bogdanove, Guido Sessa (2003) Understanding the functions of plant disease resistance proteins s[J]. Annual review of plant biology 54:23-61 https://doi.org/10.1146/annurev.arplant.54.031902.13503510.1146/annurev.arplant.54.031902.13503514502984
  5. Hanan Sela, Jianping Cheng, Yan Jun, Eviatar Nevo, and Tzion Fahima. (2009) Di­vergent diversity patterns of NBS and LRR domains of resistance gene ana­logs in wild emmer wheat populations[J]. Genome 52:557-565 https://doi.org/10.1139/g09-03010.1139/g09-03019483774
  6. He Chao-ying, Zhang Zhi-yong, Chen Shou-yi (2001) Cloning and analysis of a disease resistance gene homolog from soybean[J]. Chin Sci Bull 46(12):1017−1021
  7. Huang J, Zhang H(2004) Development of Nucleotide Sequence Analysis Soft­ware Based on Windows[J]. Bioinformatiocs (01):13-17
  8. Hulbert SH, Webb CA, Smith SM, Sun Q (2001) Resistance gene complexes: Evo­lution and utilization[J]. Annu Rev Phytopathol 39:285-312 https://doi.org/10.1146/annurev.phyto.39.1.28510.1146/annurev.phyto.39.1.28511701867
  9. Ji Jun, Yang Si-hai, Tian Da-cheng (2007) Patterns of positive selection and gene conversion in the complete disease resistance genes of rice[J]. Scientia Ag­ricultura Sinica 40(9):1856-1863
  10. Dangl JL, Jones JD (2001)Plant pathogens and integrated defense responses to infection[J]. Nature 411(6839):826-833 https://doi.org/10.1038/3508116110.1038/3508116111459065
  11. Joseph Sambrook, David W Russell (2001)Molecular cloning: a laboratory manu­al (3rd ed)[M]. Cold Spring Harbor Laboratory Press
  12. Joshi RK, Nayak S (2013) Perspectives of genomic diversification and molecular recombination towards R-gene evolution in plants[J]. Physiol Mol Biol Plants 19(1):1-9. https://doi.org/10.1007/s12298-012-0138-210.1007/s12298-012-0138-2355069024381433
  13. Johal GS, Briggs SP (1992) Reductase activity encoded by the Hm1 disease resis­tance gene in maize[J]. Science 258(5084): 985-987 . https://doi.org/10.1126/science.135964210.1126/.1359642
  14. Kanazin V, Marek LF, Shoemaker RC (1996) Resistance gene analogs are con­served and clustered in soybean [J]. Proc Natl Acad Sci USA 93(21):11746- 11750. https://doi.org/10.1073/pnas.93.21.1174610.1073/pnas.93.21.11746381298876208
  15. Kimura M, Ota T (1974) On some principles governing molecular evolution[J]. Proc Natl Acad Sci 71(7):2848-2852. https://doi.org/10.1073/pnas.71.7.284810.1073/pnas.71.7.2848
  16. Lawrence GJ, Finnegan EJ, Aylliffe MA, Ellis JG (1995) The L6 gene for flax rust re­sistance is related to the Arabidopsis bacterial resistance gene RPS2 and the tobacco viral resistance gene N[J]. Plant Cell 7(8):1195-1206 https://doi.org/10.1105/tpc.7.8.119510.1105/tpc.7.8.1195
  17. Liu Jin-ling, Liu Xiong-lun, Dai Liang-ying, Wang G (2007) Recent Progress in Elu­cidating the Structure, Function and Evolution of Disease Resistance Genes in Plants[J]. Journal of Genetics and Genomics 34(9):765-776 https://doi.org/10.1016/s1673-8527(07)60087-310.1016/s1673-8527(07)60087-3
  18. Meyers BC, Dickerman AW, Michlmore RW, Sivaramakrishnan S, Sobral BW, Young ND (1999) Plant disease resistance genes encode members of an an­cient and diverse protein family within the nucleotide-binding superfami­ly[J]. Plant J 20(3):317-332. https://doi.org/10.1046/j.1365-313x.1999.t01-1-00606.x10.1046/j.1365-313x.1999.t01-1-00606.x10571892
  19. Mondragón-Palomino M, Gaut BS (2005) Gene conversion and the evolution of three leucine-rich repeat gene families in Arabidopsis thaliana[J]. Molecular Biology and Evolution 22(12):2444-2456 https://doi.org/10.1093/molbev/msi24110.1093/molbev/msi24116120808
  20. Mondragón-Palomino M, Meyers BC, Michelmore RW, Gaut BS (2002) Patterns of positive selection in the complete NBS-LRR gene family of Arabidopsis thaliana[J]. Genome Research 12(9):1305-1315. https://doi.org/10.1101/gr.15940210.1101/gr.15940218665712213767
  21. Nei M, Kumar S (2000) Molecular evolution and phylogenetics[M]. NewYork: Ox­ford University
  22. Pan Q, Wendel J, and Fluhr R (2000) Divergent evolution of plant NBS-LRR resis­tance gene homologues in dicot and cereal genomes[J]. J Mol Evol 50(3):203-213. https://doi.org/10.1007/s00239991002310.1007/s00239991002310754062
  23. Naresh M, Krishna Raddy Anand C Reddy, B Lavanya, D. C. Lakshmana Reddy, K. Madhavi Press Inc Parniske M, Jones JD (1999) Recombination between di­verged clusters of the tomato Cf-9 plant disease resistance gene family[J]. Proc Natl Acad Sci USA 11; 96(10):5850-5855 https://doi.org/10.1073/pnas.96.10.585010.1073/pnas.96.10.58502194910318973
  24. Reddy P(2017), Isolation, characterization and genetic diversity of NBS-LRR class disease-resistant gene analogs in multiple virus resistant line of chilli (Cap­sicum annuum L.). Biotech 7: 114. https://doi.org/10.1007/s13205-017-0720-y10.1007/s13205-017-0720-y545135428567626
  25. Reddy AC, Venkat S, Singh TH, Aawath C, Reddy KM, Reddy LDC(2015) Isolation, characterization and evolution of NBS-LRR encoding disease-resistance gene analogs in eggplant against bacterial wilt. Eur J Plant Pathol 143(3): 417-426. https://doi.org/10.1007/s10658-015-0693-910.1007/s10658-015-0693-9
  26. Swanson, W. J., R. Nielsen, and Q. Yang (2003) Pervasive adaptive evolution in mammalian fertilization proteins[J]. Mol. Biol. Evol 20:18-20 https://doi.org/10.1093/oxfordjournals.molbev.a00423310.1093/oxfordjournals.molbev.a004233
  27. Tarr DE, Alexander HM (2009) TIR-NBS-LRR genes are rare in monocots: evidence from diverse monocot orders[J]. BMC Research Notes 2:197 https://doi.org/10.1186/1756-0500-2-19710.1186/1756-0500-2-197
  28. Whitham S, Dinesh-Kumar SP, Choi D, Hehl R, Corr C, Baker B (1994) The product of the tobacco mosaic virus resistance gene N: similarity to toll and the in­terleukin-1 receptor[J]. Cell 78(6):1101-1115 https://doi.org/10.1016/0092-8674(94)90283-610.1016/0092-8674(94)90283-6
  29. Wu Zheng-yi, Peter H Raven (2006) Flora of China Vol 22 (Poaceae)[M]. Science Press (Beijing) and Missouri Botanical Garden Press (St. Louis)
  30. Xu Mei-qing, Dai Yu-cheng, Fan Shao-hu, Jin Li-xin, Lv Quan, Tian Guo-zhong, Wang Lai-fa (2006) Records of bamboo diseases and the taxonomy of their pathogens in China (I)[J]. Forest Research 19(6):692-699
  31. Yang Z, R Nielsen, N Goldman, and AM. Pedersen (2000) Codon-substitution models for heterogeneous selection pressure at amino acid sites[J]. Genet­ics 155:431-44910.1093/genetics/155.1.431146108810790415
  32. Yin YX, Ou ZY, Xu Y, Zhou R, Xia HM (2014) Phylogenetic analysis of the VP1 gene of Enterovirus 71 in Guangzhou during the high occurrence period of 2008[J]. Virus Genes.48(3):538-542. https://doi.org/10.1007/s11262-014-1046-z10.1007/s11262-014-1046-z24515837
  33. Yuan Gao, Li Tian, Song Qin (2008) Positive selection in plant evolution[J]. Chi­nese Bulletin of Botan 25(4):401-406
  34. Yoshimura S, Yamanouchi U, Katayose Y, Toki S, Wang ZX, Kono I, Kurata N, Yano M, Iwata N, Sasaki T (1998) Expression of Xa1, a bacterial blight-resistance gene in rice is induced by bacterial inoculation[J]. Proc Natl Acad Sci USA 95(4):1663-1668. https://doi.org/10.1073/pnas.95.4.166310.1073/pnas.95.4.1663191409465073
  35. Zhang E, Guo X, Meng Z, et al.(2016) Construction, expression, and characteriza­tion of Arabidopsis thaliana, 4CL, and Arachis hypogaea RS, fusion gene 4CL::RS, in Escherichia coli[J]. World Journal of Microbiology & Biotechnolo­gy 31(9):1-7.10.1007/s11274-015-1889-z
DOI: https://doi.org/10.2478/sg-2018-0017 | Journal eISSN: 2509-8934 | Journal ISSN: 0037-5349
Language: English
Page range: 117 - 123
Published on: Dec 13, 2018
Published by: Johann Heinrich von Thünen Institute
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year

© 2018 Yu Li-Xia, Xi Jun-Jun, Bai Qiong, Zhang Ya-ping, Li Bin, Yan Bo, published by Johann Heinrich von Thünen Institute
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.