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Human papillomavirus (HPV) genotyping and prognostic value of HPV E4 protein and transcription factors NANOG and SOX11 in atypical p16 patchy squamous epithelium of cervix Cover

Human papillomavirus (HPV) genotyping and prognostic value of HPV E4 protein and transcription factors NANOG and SOX11 in atypical p16 patchy squamous epithelium of cervix

Open Access
|Jul 2025

Figures & Tables

FIGURE 1.

Images of atypical squamous epithelium cases with patchy p16 reaction: (A–F). The same sample stained with HE and p16 at 200× magnification. Panels (A), (C), and (E) show HE staining, while panels (B), (D), and (F) show corresponding p16 staining.

TABLE 1.

Immunohistochemical reactions to various biological markers and human papillomavirus (HPV) genotyping in tissue biopsy and previous cervical smear, where available, by study group

Groupp16NKi67NE4 HPVNNanogNHPV genotypingN tissueN smear
p16 null N = 11Null1105Neg.11Neg.7Neg93
Patchy01/34Pos.014lrHPV only21
En Block02/3020hrHPV03
3/3230
p16 patchy N = 24Null0012Neg.23Neg.13Neg102
Patchy241/35Pos.1111lrHPV only62
En Block02/3320hrHPV812
3/3430
Condyloma N = 9Null000Neg.7Neg.0Neg01
Patchy91/32Pos.219lrHPV only62
En Block02/3120hrHPV31
3/3630
CIN1 N = 12Null002Neg.2Neg.0Neg00
Patchy101/32Pos.10112lrHPV only61
En Block22/3420hrHPV63
3/3430
CIN2 N = 11Null000Neg.3Neg.0Neg10
Patchy01/30Pos.817lrHPV only20
En Block112/3224hrHPV83
3/3930
CIN3 N = 9Null000Neg.7Neg.1Neg00
Patchy01/30Pos.213lrHPV only00
En Block92/3023hrHPV94
3/3932

1 0 = null or parabasal reaction of Ki67; 1/3 = Ki67 positive in predominantly lower 1/3 of epithelium; 2/3 = Ki67 positive in predominantly lower 2/3 of epithelium; 3/3 = Ki67 positive in full thickness of epithelium; CIN = cervical intraepithelial neoplasia; hrHPV = high risk HPV; lrHPV = low risk HPV; Neg. = negative reaction; Pos. = positive reaction

TABLE 2.

Follow-up histology, cytology, human papillomavirus (HPV) result by study groups (p16 null and p16 patchy)

GroupFollow up histoNFollow up cytoNFollow up HPVN
p16 null (11 cases, 9 biopsies)Neg0Neg5Neg5
CIN11ASC-US4Pos3
CIN21LSIL0
CIN31HSIL0
p16 patchy (24 cases, 17 biopsies)Neg0Neg5Neg4
CIN12ASC-US6Pos5
CIN20LSIL4
CIN33HSIL2

1 ASC-H = atypical squamous cells, cannot exclude HSIL; ASC-US = atypical squamous cells of undetermined significance; CIN = cervical intraepithelial neoplasia; Follow up cyto = cervical smears from follow-up; Follow up histo = histological samples from follow-up; Follow-up HPV = HPV results using the Hybrid Capture II assay; HSIL = highgrade squamous intraepithelial lesions; LSIL = low-grade squamous intraepithelial lesions; Neg = negative; Pos = positive

1 Follow-up after radical resections (conizations, cervical amputations, hysterectomies) was not informative, as the lesion was completely removed; therefore, this data is not included. In the case of multiple consecutive examinations (cytology, HPV testing), we only considered the most pathological cytology results or the positive HPV test.

TABLE 3.

Biomarkers in the primary biopsy and follow-up in the groups with atypical squamous epithelium with a patchy and a null reaction to p16

GroupCaseKi67E4 HPVNanogHPV genotypesFollow-up sampleFollow-up diagnosisTime from primary biopsy to follow-up sample
p1611/3-1+31, 52biopsyCIN12 years
null23/3--53biopsyCIN22 years
31/3---biopsyCIN34 months
p16 patchy40--39coneCIN18 months
51/3---coneCIN16 years
63/3-1+53coneCIN35 years
73/3--52, 53, 56, 66, 73Cervical amputationCIN310 months
81/3--44coneCIN310 months

1 0 = null or parabasal reaction of Ki67; 1/3 = Ki67 positive in predominantly lower 1/3 of epithelium; 2/3 = Ki67 positive in predominantly lower 2/3 of epithelium; 3/3 = Ki67 positive in full thickness of epithelium; - = negative reaction, + = positive reaction; CIN = cervical intraepithelial neoplasia; HPV = human papillomavirus

TABLE 4.

Comparison of different biological markers between groups using Spearman correlation

Groupsp16Ki67HPV E4NanoglrHPV tissuehrHPV tissuehrHPV: tissue+smearlrHPV: tissue+smear
p16 null vs. p16 patchyr = 1 p = 0.000r = 0.000r = 0.116r = 0.089r = 0.209r = 0.384 p = 0.025r = 0.274r = 0.285
p16 patchy vs. condylomar = 0.000r = 0.535 p = 0.001r =0.280r = 0.494 p = 0.004r = 0.458 p = 0.007r = 0.000r=-0.186r = 0.494 p = 0.004
p16 patchy vs. CIN1r = 0343 p = 0.041r = 0.35 p = 0.037r = 0.81 p = 0.000r = 0.532 p = 0.001r = 0.354 p = 0.034r = 0.161r = -0.039r = 0.359 p = 0.032
p16 patchy vs. CIN2r = 1 p = 0.000r = 0.66 p = 0.000r = 0.728 p = 0.000r = 0.632 p = 0.000r = -0.193r = 0.45 p = 0.007r = 0.176r = -0.089
p16 patchy vs. CIN3r = 1 p = 0.000r = 0.683 p = 0.000r = 0.280r = 0.575 p = 0.000r = -0.375 p = 0.032r = 0.594 p = 0.000r = 0.433 p = 0.012r = -0.433 p = 0.012
p16 null vs. condylomar = 1r = 0.617 p = 0.004r = 0.369r = 0.664 p = 0.001r = 0.704 p = 0.001r = 0.464 p = 0.039r = 0.066r = 0.818 p = 0.000
p16 null vs. CIN1r = 0.963 p = 0.000r = 0.394r = 0.84 p = 0.000r = 0.691 p = 0.000r = 0.568 p = 0.005r = 0.569 p = 0.005r = 0.233r = 0.652 p = 0.001
p16 null vs. CIN2r = 1r = 0.735 p = 0.000r = 0.756 p = 0.000r = 0.728 p = 0.000r = 0.000r = 0.832 p = 0.000r = 0.455 p = 0.034r = 0.204
p16 null vs. CIN3r = 1r = 0.783 p = 0.000r = 0.369r = 0.665 p = 0.001r = -0.302r = 1r = 0.739 p = 0.000r = -0.302
Atypia (p16 patchy and null) vs. CIN2r = 0.811 p = 0.000r = 0.607 p = 0.000r = 0.751 p = 0.000r = 0.598 p = 0.000r = -0.125r = 0.521 p = 0.000r = 0.231r = -0.007

1 Bold font = statistically significant correlation; CIN = cervical intraepithelial neoplasia; hrHPV: tissue = high risk HPV detected in tissue; hrHPV: tissue+smear = high risk HPV detected in tissue and in cervical smear taken before biopsy; HPV = human papillomavirus; lrHPV: tissue = low risk HPV detected in tissue; lrHPV: tissue+smear = low risk HPV detected in tissue and in cervical smear taken before biopsy; p = p value; p16 null = atypical squamous epithelium with a null p16 expression; p16 patchy = atypical squamous epithelium with a patchy p16 expression; r = correlation coefficient

1 Colour scale based on correlation coefficient value:

1
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-1

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FIGURE 2.

Only case in the group with atypical squamous epithelium with patchy p16 expression and positive reaction for E4 human papillomavirus (HPV). The tissue was positive for HPV16 and 31 and the follow-up was negative. The same section at 100x magnification: (A) HE staining; (B) p16 staining, (C) Ki67 staining, (D) E4 HPV staining, (E) Nanog staining, F. SOX11 staining.

FIGURE 3.

One of the three cases in the group with atypical squamous epithelium with patchy p16 with CIN3 on follow-up. The tissue was positive for human papillomavirus (HPV) 52, 53,56, 66, 73. The same section at 100x magnification: (A) HE. (B) p16 staining. (C) Ki67 staining. (D) E4 HPV staining. (E) Nanog staining. (F) SOX11 staining.

FIGURE 4.

Immunohistochemical reactions in the only cervical intraepithelial neoplasia 3 (CIN3) case with a positive SOX11 reaction in study. The same section at 100x magnification: (A) HE. (B) p16 staining. (C) Ki67 staining. (D) E4 HPV staining. (E) Nanog staining. (F) SOX11 staining.

DOI: https://doi.org/10.2478/raon-2025-0038 | Journal eISSN: 1581-3207 | Journal ISSN: 1318-2099
Language: English
Page range: 391 - 402
Submitted on: Mar 16, 2025
Published on: Jul 8, 2025
Published by: Association of Radiology and Oncology
In partnership with: Paradigm Publishing Services
Publication frequency: 4 issues per year

© 2025 Maja Kebe Radulovic, Anja Ostrbenk, Mario Poljak, Margareta Strojan-Flezar, published by Association of Radiology and Oncology
This work is licensed under the Creative Commons Attribution 4.0 License.