Have a personal or library account? Click to login
Application of Metabolomic Analysis in Exploration of Plant Genetic Resources Cover

References

  1. Abeysekara, S., Swaminathan, S., Desai, N., Guoc, L., Bhattacharyyaa, M. K. (2016). The plant immunity inducer pipecolic acid accumulates in the xylem sap and leaves of soybean seedlings following Fusarium virguliforme infection. Plant Sci.,243, 105-114.10.1016/j.plantsci.2015.11.00826795155
  2. Alpatyeva, N. V., Gavrilyuk, I. P., Leont’eva, N. A., Oreshko, L. S., Krasil’nikov, V. N., Barsukova, N. A., Loskutov, I. G. (2004). Prolamins and celiac disease [Алпатьева, H. B., Гаврилюк, И. П., Леонтьева, Н. А., Орешко,Л. С., Красильников, B. Н., Барсукова, Н. А., Лоскутов, И. Г. Проламины и целиакия]. Agric. Russia,6, 41–9 (in Russian)
  3. Afonnikov, D. A, Mironova,V. V. (2014). Systematic biology [Афонников, Д. А., Миронова, B. B. Системная биология]. Russ. J. Gen. Appl. Res.,18, 175-192 (in Russian).
  4. Balmer, D., Flors, V., Glauser, G., Mauch-Mani, B. (2013). Metabolomics of cereals under biotic stress: Current knowledge and techniques. Frontiers Plant Sci.,4, 82.10.3389/fpls.2013.00082363278023630531
  5. Bernardi, J., Stagnati, L., Lucini, L., Rocchetti, G., Lanubile, A., Cortellini, C., De Poli, G., Busconi, M., Marocco, A. (2018). Phenolic profile and susceptibility to Fusarium infection of pigmented maize cultivars. Frontiers PlantSci.,9, 1189.10.3389/fpls.2018.01189610255830154815
  6. Bhandari, K., Nayar, H. (2014). Low temperature stress in plants: An overview of roles of cryoprotectants in defense. In: Physiological Mechanisms and Adaptation Strategies in Plants Under Changing Environment. New York, NY: Springer, pp. 193-265.10.1007/978-1-4614-8591-9_9
  7. Björck, I., Östman, E., Kristensen, M., Anson, N. M., Priced, R. K., Haenenc, G. R. M. M., Havenaar, R., Knudsen, K. E. B., Frid, A., Mykkanen, H., Welch, R. W., Riccardi G. (2012). Cereal grains for nutrition and health benefits: Overview of results from in vitro, animal and human studies in the HEALTHGRAIN project. Trends Food Sci. Technol,25, 87-100.10.1016/j.tifs.2011.11.005
  8. Blanch, M., Alvarez, I., Sanchez-Ballesta, M. T., Escribano, M., Merodio, C. (2017). Trisaccharides isomers, galactinol and osmotic imbalance associated with CO2 stress in strawberries. Postharvest Biol. Technol.,131, 84-91.10.1016/j.postharvbio.2017.05.008
  9. Bolton, M. D. (2009). Current review: Primary metabolism and plant defense-fuel for the fire. Mol. Plant-Microbe Interactions, 22, 487-497.10.1094/MPMI-22-5-048719348567
  10. Buerstmayr, H., Ban, T., Anderson, J. A. (2009). QTL mapping and marker-assisted selection for Fusarium head blight resistance in wheat: A review. Plant Breed,128, 1-26.10.1111/j.1439-0523.2008.01550.x
  11. Bushnell, W. R., Perkins-Veazie, P., Russo, V. M., Collins, J., Seeland, T. M. (2009). Effects of deoxynivalenol on content of chloroplast pigments in barley leaf tissues. Phytopathology,100, 33-41.10.1094/PHYTO-100-1-0033
  12. Chakraborty, S., Newton, A. C. (2011). Climate change, plant diseases and food security: an overview. Plant Pathol., 60, 1-14.10.1111/j.1365-3059.2010.02415.x
  13. Cuperlovic-Culf, M., Rajagopalan, N. K., Tulpan, D., Loewen, M. C. (2016). Metabolomics and cheminformatics analysis of antifungal function of plant metabolites. Metabolites, 6, 31.10.3390/metabo6040031519243727706030
  14. Croze, M. L., Vella, R. E., Pillon, N. J., Soula, H. A., Hadji, L., Guichardant, M., Soulage, C. O. (2012). Chronic treatment with myo-inositol reduces white adipose tissue accretion and improves insulin sensitivity in female mice. J. Nutritional Biochemistry, 24, 457-466.10.1016/j.jnutbio.2012.01.00822658648
  15. Gagkaeva, T. Yu., Gavrilova, O. P., Levitin, M. M. (2014). Biodiversity and a real main toxin-producing fungi of the genus Fusarium. Biosfera, 6, 36–45.
  16. Gagkaeva, T. Yu., Gavrilova, O. P., Levitin, M. M., Novozhilov, K. V. (2011). Cereal crops Fusarium. Supplement to Journal Protection and Quarantine of Plants [Гагкаева T. Ю., Гаврилова О. П., Левитин М. М., Новожилов, К. B. Фузариоз зерновых культур], 5, 1-100 (in Russian).
  17. Gu, J., Jing L., Ma, X., Zhang, Z., Guo, Q., Li, Y. (2015). GC-TOF-MS-based serum metabolomic investigations of naked oat bran supplementation in high-fat-diet-induced dyslipidemic rats. J. Nutritional Biochemistry,26, 1509-1519.10.1016/j.jnutbio.2015.07.019
  18. Dyakov, Yu. T. (2012). Fundamental phytopatology [Дьяков, Ю. T. ф-ундаментальная фumonamoлoгuя].KIasand, Moskva. 512 pp.
  19. Ermakov, A. I., Ikonnikova, M. I., Lukovnikova, G. I., Yarosh, N. P. (1969). The results and perspectives of biochemical research of cultivated plants [Ермаков, А. И., Иконникова, М. И., Луковникова, Г. И., Ярош, Н. П. Итоги и перспективы биохимических исследований культурных растений]. Works Appl. Bot. Gen. Breed., 41, 326-364 (in Russian)
  20. Fernie, A. R., Schauer, N. (2009). Metabolomics-assistedbreeding: A viable option for crop improvement? Trends Genet., 25, 39–48.10.1016/j.tig.2008.10.010
  21. Fiehn, O., Kopka, J., Dormann, P., Altmann, T., Trethewey, R. N., Willmitzer, L. (2000). Metabolite profiling for plant functional genomics. Nature Biotechnol., 18, 1157-1161.10.1038/81137
  22. Harrigan, G. G., Brackett, D. J., Boros, L. G. (2005). Medicinal chemistry, metabolic profiling and drug target discovery: A role for metabolic profiling in reverse pharmacology and chemical genetics. Mini Rev. Medi. Chem.,5, 13-20.10.2174/1389557053402800
  23. Hill, C. B., Roessner, U. (2013). Metabolic profiling of plants by GC-MS. In: Weckwerth, W., Kahl, G. (eds.). The Handbook ofPlantMetabolomics. Weinheim: Wiley-VCH Verlag GmbH & Co. KGaA, pp. 1-23.10.1002/9783527669882.ch1
  24. Hollywood, K., Brison, D. R., Goodacre, R. (2006). Metabolomics: Current technologies and future trends . Proteomics, 6 (17), 4716–4723.10.1002/pmic.200600106
  25. Kaur, J., Bhatti, D. S., Goyal, M. (2015). Influence of copper application on forage yield and quality, of oats fodder in copper deficient soils. Indian J. Anim. Nutr.,32, 290-294.
  26. Khakimov, B., Bak, S., Engelsen, S. B. (2014a). High-throughput cereal metabolomics: Current analytical technologies, challenges and perspectives. J. Cereal Sci., 59, 393–418.10.1016/j.jcs.2013.10.002
  27. Khakimov, B., Jespersen, B. M., Engelsen, S. B. (2014b). Comprehensive and comparative metabolomic profiling of wheat, barley, oat and rye using Proc. Latvian Acad. Sci., Section B, Vol. 73 (2019), No. 6. gas chromatography-mass spectrometry and advanced chemometrics. Foods.,3, 569-585.10.3390/foods3040569
  28. Kluger, B., Bueschl, C., Lemmens, M., Michlmayr, H., Malachova, A., Koutnik, A., Maloku, I., Berthiller, F., Adam, G., Krska, R., Schuhmacher, R. (2015). Biotransformation of the mycotoxin deoxynivalenol in Fusarium resistant and susceptible near isogenic wheat lines. PLoS ONE, 10 (3),e0119656.10.1371/journal.pone.0119656
  29. Kokubo, Y., Nishizaka, M., Ube, N., Yabuta, Y., Tebayashi, S. I., Ueno, K., Taketa, S., Ishihara, A. (2017). Distribution of the tryptophan pathway-derived defensive secondary metabolites gramine and benzoxazinones in Poaceae. Biosci. Biotechnol. Biochem., 81, 431–440.2785419010.1080/09168451.2016.1256758
  30. Konarev, A. V. (1994). All-Russian Institute of Plant Industry and it contribution to development of agricultural science and plant breeding of the country [Конарев A. B. Всероссийский НИИ растениеводства и его вкладвразвитие с.-х. науки иселекциистраны]. Agricult. Biol., 3, 13-75 (in Russian).
  31. Konarev, A. V., Khoreva, V. I. (2000). Biochemicalresearch of plant genetic resources in VIR [КонаревА. В., Хорева В. И. Биохимическое изучение генетических ресурсов растений в ВИРе]. VIR, S-Petersburg (in Russian)
  32. Konarev, A. V., Shelenga, T. B., Perchuk, I. N., Blinova, E. V., Loskutov, I. G. (2015). The characteristic of oat diversity (genus Avena L.) from VIR collection — an initial material for breeding oat Fusarium resistance [Конарев, A. B., Шеленга, T. B., Перчук, И. Н., Блинова, Е. В., Лоскутов, И. Г. Характеристика разнообразия овса (A-vena L.) из коллекции ВИР — исходного материала для селекции на устойчивость к фузариозу]. Agric. Russia, 5, 2-10 (in Russian).10.30906/1999-5636-2015-5-2-10
  33. Krasilnikov, V. N. (2015). Actual directions of using plant genetic resources in technology for functional and specific food [Красильников, В. Н. Актуальные направления использования генетических ресурсов растений в пищевой инженерии продуктов функционального и специа^и-зированного назначения]. Agric. Russia, 11, 36-42 (in Russian).10.30906/1999-5636-2015-11-36-42
  34. Kumar, V., Sinha, A. K., Makkar, H. P. S., Becker, H. (2010). Dietary roles of phytate and phytase in human nutrition: A review. Food Chem.,120, 949-959.10.1016/j.foodchem.2009.11.052
  35. Lahiri, A., Chatterjee, M. A., Ghosh, K., Majee, M. (2003). Diversification and evolution of L-myo-inositol 1-phosphat e synthase. FEBS Letters, 553, 3-10.10.1016/S0014-5793(03)00974-8
  36. Langridge, P., Fleury, D. (2011). Making the most of ‘omics’ for crop breeding. Trends Biotechnol.,29, 33–40.10.1016/j.tibtech.2010.09.006
  37. Lemmens, M., Scholz, U., Berthiller, F., D’all Asta, C., Koutnik, A., Schuhmacher, R., Adam, G., Buerstmayr, H., Mesterházy, A., Krska, R., Ruckenbauer, P. (2005). The ability to detoxify the mycotoxindeoxynivalenol colocalizes with a major quantitative trait locus. Mol. Plant Microbe Interact., 18, 1318-1324.10.1094/MPMI-18-1318
  38. Leonova, S., Shelenga, T., Hamberg, M., Konarev, A., Loskutov, I., Carlsson, A. (2008). Analysis of oil composition in cultivars and wild species of Oat (Avena sp.). J. Agric. Food Chem.,56, 7983-7991.10.1021/jf800761c
  39. Loewus, F. A., Murthy, P. P. N. (2000). Myo-inositol metabolism in plants. Plant Sci.,150, 1-19.10.1016/S0168-9452(99)00150-8
  40. Lokhov, P. G., Archkov, A. I. (2008). Mass-spectrometry methods in metabolomics [Лохов, П. Г., Арчаков, A. И. Масс-спектрометрические методы в метаболомике. Biomed. Chem., 54, 497-511 (in Russian).
  41. Loskutov, I. G. (2007). Oat (Avena L.). Distribution, Taxonomy, Evolution and Breeding Value [Лоскутов, И. Г. Овес (Avea L.). Распространение, систематика, эволюция и селекционная ценность]. VIR. S-Pb. 336 pp. (in Russian).
  42. Loskutov, I. G. (2009). Diversity of naked barley and oat and their use to crop breeding. In: Works on Applied Botany, Genetics and Plant Breeding [Лоскутов, И. Г. Разнообразие голозерных форм ячменя и овса и его использование в селекции]. VIR, St. Petersburg, 173-177 (in Russian).
  43. Loskutov, I. G., Rines, H. W. (2011). Avena L. In: Kole, C. (Ed.) Wild Crop Relatives: Genomic & BreedingResources. Vol. 1. Cereals. Springer, Heidelberg, Berlin, New York, pp. 109-184.10.1007/978-3-642-14228-4_3
  44. Loskutov, I. G., Shelenga, T. V., Konarev, A. V., Shavarda, A. L., Blinova, D. V., Dzyubenko, N. I. (2017). The metabolomic approach to the comparative analysis of wild and cultivated species of oats (Avena L.). Russi. J. Gen. Appl. Res.,7, 501-508.10.1134/S2079059717050136
  45. Loskutov, I. G., Shelenga, T. V., Konarev, A. V., Horeva, V. I., Shavarda, A. L. , Blinova, E. V., Gnutikov, A. A. (2019a). Biochemical aspects of interactions between fungi and plants: A case study of Fusarium in oats. Agricult. Biol.,54, 575-588.10.15389/agrobiology.2019.3.575eng
  46. Loskutov, I. G., Shelenga, T. V., Konarev, A. V., Vargach, Yu. I., Porokhovinova, E. A., Blinova, E. V., Gnutikov, A. A., Rodionov, A.V. (2019b). Metabolomics in the structurization and phenotyping of varietal diversity of cultivated oats (Avena sativa L.): Biochemical differentiation of naked and covered forms [Лоскутов, И. Г., Шеленга, T. В., Конарев, А. В., Варгач, Ю. И., Пороховинова, Е. А., Блинова, Е. В., Гнутиков, А. А., Родионов, А. В. Биохимический подход к структурированию сортового разнообразия голозерных и пленчатых форм культурного овса (Avena sativa L.)]. Ecological Genetics (in press) (in Russian).
  47. Ermakov, A. I. (Ed.) (1987). Methods of biochemical evaluation of plants [Методы биохимического изучения растений. Под ред. А. И. Ермакова]. Agropromizdat, Leningrad (in Russian)
  48. Okazaki, Y., Katayama, T. (2014). Dietary phytic acid modulates characteristics of the colonic luminal environment and reduces serum levels of proinflammatory cytokines in rats fed a high-fat diet. Nutri. Res.,34, 1085-1091.10.1016/j.nutres.2014.09.01225444642
  49. Pestka, J. (2010). Deoxynivalenol: mechanisms of action, human exposure, and toxicological relevance. Arch. Toxicol.,84, 663-679.10.1007/s00204-010-0579-82079893020798930
  50. Pieterse, C.M. J., Poelman, E. H., Van Wees, S. C. M., Dicke, M. (2013). Induced plant responses to microbes and insects. Frontiers Plant Sci., 4,1-3.10.3389/fpls.2013.00475383602624312114
  51. Perkowski, J., Stuper, K., Buśko, M., Góral, T., Kaczmarek, A., Jeleń, H. (2012). Differences in metabolomic profiles of the naturally contaminated grain of barley, oats and rye. J. Cereal Sci., 56, 544–551.10.1016/j.jcs.2012.07.012
  52. Sánchez-Martín, J., Heald, J., Kingston-Smith, A., Winters, A., Rubiales, D., Sanz, M., Mur, L. A. J., Prats, E. (2015). A metabolomic study in oats (Avena sativa) highlights a drought tolerance mechanism based upon salicylate signalling pathways and the modulation of carbon, antioxidant and photo-oxidative metabolism. Plant, Cell Environ.,38, 1434-1452.10.1111/pce.1250125533379
  53. Schauer, N., Fernie, A. R. (2006). Plant metabolomics: Towards biological function and mechanism. Trends Plant Sci., 11, 508-516.10.1016/j.tplants.2006.08.00716949327
  54. Schenck, C. A., Maeda, H. A. (2018). Tyrosine biosynthesis, metabolism, and catabolism in plants. Phytochemistry,149, 82-102.10.1016/j.phytochem.2018.02.00329477627
  55. Seki, M., Narusaka, M., Ishida, J., Nanjo, T., Fujita, M., Oono, Y., Kamiya, A., Nakajima, M., Enju, A., Sakurai, T., Satou, M., Akiyama, K., Taji, T., Yamaguchi-Shinozaki, K., Carninci, P., Kawai, J., Hayashizaki, Y., Shinozaki, K. (2002). Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNAmicroarray. Plant J.,31, 279-292.10.1046/j.1365-313X.2002.01359.x12164808
  56. Sitkin, S. I., Tkachenko, E. I., Vakhitov, T. Ya., Oreshko, L. S., Zhigalova, T. N. (2013). Metabolic of blood serum according to a gas chromatography-mass-spectrometry (rX-MC) at patients with ulcer colitis and celiac disease [Ситкин, C. И., Ткаченко, Е. И., Вахитов, T. Я., Орешко, Л. С., Жигалова, Т. Н. Метаболом сыворотки крови по данным газовой хроматографии-масс-спектрометрии (rX-MC) у пациентов с язвенным колитом и больных целиакией]. Exper. Gastroenter., 12, 77-90 (in Russian)
  57. Sharova, E. I. (2016). Antioxidants of plants [Шарова, Е. И. Антиоксиданты растений]. Izdatelstvo St-Pb. Universiteta, St. Petersburg, pp. 102-118 (in Russian).
  58. Shelenga, T. V., Bekish, L. P., Novikova, L. Yu., Perchuk, I. N., Dubovskaya, A. G., Kerv, Yu. A., Razhna, K., Konarev, A. V. (2018). Fatty acid composition of oil seed breeding lines spring rapeseed (Brassica napus L.) in Leningrad region [Шеленга, T. В., Бекиш, Л. П., Новикова, л. Ю., Перчук, И. Н., Дубовская, А. Г., Керв, Ю. А., Ражна, К., Конарев, А. В. Жирно-кислотный состав масла семян селекционных линий ярового рапса (Brassica napus L.) в условиях ленинградской области]. Agrie. Russia, 5, 12-17 (in Russian).10.30906/1999-5636-2018-5-12-17
  59. Shelenga, T. V., Konarev, A. V., Dzubenko, N. I., Malyshev, L. L., Takai, T. (2006). Evaluation of accessions of meadow fescue from Vavilov Institute of Plant Industry, containing symbiotic endofitic fungus of genus Neotyphodium [Шеленга, T. В., Конарев, А. В., Дзюбенко, Н. И, Малышев, Л. Л., Такаи, T. Изучение образцов овсяницы луговой из коллекции ВНИИ растениеводства имени Н. И. Вавилова, содержаш;их симбиотические грибы-эндофиты рода Neotyphodium]. Russian Agrie. Sei., 1, 20-22 (in Russian).
  60. Shelenga, T. V., Solov’eva, A. E., Shavarda, A. L., Konarev, A. V. (2014). Research of metabolom of crops ofN.I. Vavilov VIR collection. Abstracts of International Scientific Conference dedicated to the 120th anniversary of VIR. 6-8 October. [Шеленга, T. В., Соловьева, А. E., Шаварда, А. Л., Конарев, А. В. Исследование метаволома культур коллекции ВИР им. Н. И. Вавилова]. 98 pp. (in Russian).
  61. Shulaev, V. (2006). Metabolomics technology and bioinformatics. Brief Bioinform.,7, 128-139.10.1093/bib/bbl01216772266
  62. Shulaev, V., Cortes, D., Miller, G., Mittler, R. (2008). Metabolomics for plant stress response. Ph-ysiol. Plant.,132, 199-208.10.1111/j.1399-3054.2007.01025.x18251861
  63. Smolikova, G. N., Shavarda, A. L., Alekseychuk, I. V., Chantzeva, V. V., Medvedev, S. S. (2015). Metabolomic approach to assessment of cultivars specific of seeds of Brassiea napus L. [Смоликова, Г. Н., Шаварда, А. Л., Алексейчук, И. В., Чанцева, В. В., Медведев, С. С. Метаболомный подход к оценке сортовой специфичности семян Brassiea napus L.] Russ. J. Gen. Appl. Res., 19, 121-127 (in Russian).
  64. Vidigal, D. S., Willems, L., van Arkel, J., Dekkers, B. J. W., Hilhorst, H. W. M. , Bentsink, L. (2016). Galactinol as marker for seed longevity. Plant Sci.,246, 112-118.10.1016/j.plantsci.2016.02.01526993241
  65. Warth, B., Parich, A., Bueschl, C., Schoefbeck, D., Katharina, N., Neumann, N. , Kluger B., Schuster, K., Krska, R., Adam, G., Lemmens, M., Schuhmacher R. (2015). GC-MS based targeted metabolic profiling identifies changes in the wheat metabolome following deoxynivalenol treatment. Metabolomics,11, 722-738.10.1007/s11306-014-0731-1441915925972772
  66. Woyengo, T. A., Ramprasath, V. R., Jones, P. J. H. (2009). Anticancer effects of phytosterols (Review). Eur. J. Clin. Nutr.,63, 813-820.10.1038/ejcn.2009.2919491917
  67. Yandeau-Nelson, M. D., Lauter, N., Zabotina, O. A. (2015). Advances in metabolomic applications in plant genetics and breeding. CAB Re~v.,10, 1-17.10.1079/PAVSNNR201510040
  68. Zhao, Y., Chang, S. K. C., Qu, G., Li, T., Cui, H. (2009). p-sitosterol inhibits cell growth and induces apoptosis in SGC-7901 human stomach cancer cells. J. Agrieult. Food Chem., 57, 5211-521810.1021/jf803878n19456133
  69. Žilić, S., Šukalović, V. H., Dodig, D., Maksimović, V., Maksimović, M., Basić, Z. (2011). Antioxidant activity of small grain cereals caused by phenolics and lipid soluble antioxidants. J. Cereal Sei., 54, 417-424.10.1016/j.jcs.2011.08.006
DOI: https://doi.org/10.2478/prolas-2019-0076 | Journal eISSN: 2255-890X | Journal ISSN: 1407-009X
Language: English
Page range: 494 - 501
Submitted on: Dec 24, 2018
Accepted on: Sep 9, 2019
Published on: Dec 26, 2019
Published by: Latvian Academy of Sciences
In partnership with: Paradigm Publishing Services
Publication frequency: 6 issues per year

© 2019 Igor G. Loskutov, Tatyana V. Shelenga, Alexander V. Rodionov, Valentina I. Khoreva, Elena V. Blinova, Alexander V. Konarev, Alexander A. Gnutikov, Aleksey V. Konarev, published by Latvian Academy of Sciences
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.