Have a personal or library account? Click to login
Genetic polymorphism in the mitochondrial D-loop of Oriental White-backed Vultures (Gyps bengalensis) Cover

Genetic polymorphism in the mitochondrial D-loop of Oriental White-backed Vultures (Gyps bengalensis)

Open Access
|Jun 2022

References

  1. Acharya, R., Cuthbert, R., Baral, H. S. & Shah, K. B. 2009. Rapid population declines of Himalayan Griffon Gyps himalayensis in Upper Mustang, Nepal. – Bird Conservation International 19(1): 99–107. DOI: 10.1017/S0959270908007417
  2. Bandelt, H. J., Lahermo, P., Richards, M. & Macaulay, V. 2001. Detecting errors in mtDNA data by phylogenetic analysis. – International Journal of Legal Medicine 115(2): 64–69. DOI: 10.1007/s00414010022811724431
  3. BirdLife International 2007. Species factsheet: Gyps coprotheres. – http://www.birdlife.org on 21/6/2007
  4. Buechley, E. R. & Şekercioğlu, Ç. H. 2016. The avian scavenger crisis: looming extinctions, trophic cascades, and loss of critical ecosystem functions. – Biological Conservation 198: 220–228. DOI: 10.1016/j.biocon.2016.04.001
  5. Chaudhary, A., Subedi, T. R., Giri, J. B., Baral, H. S., Bidari, B., Subedi, H. E. M. & Cuthbert, R. J. 2012. Population trends of Critically Endangered Gyps vultures in the lowlands of Nepal. – Bird Conservation International 22(3): 270–278. DOI: 10.1017/S0959270911000426.
  6. Choisy, J. P. 2013. The vultures at the crossroads of biodiversity, politics, tourism, the environment, and agriculture. – Vulture News 63: 15–39. DOI: 10.4314/vulnew.v63i1.2
  7. Cortés-Avizanda, A., Blanco, G., DeVault, T. L., Markandya, A., Virani, M. Z., Brandt, J. & Donázar, J. A. 2016. Supplementary feeding and endangered avian scavengers: benefits, caveats, and controversies. – Frontiers in Ecology and the Environment 14(4): 191–199. DOI: 10.1002/fee.1257
  8. Cuthbert, R., Taggart, M. A., Prakash, V., Saini, M., Swarup, D., Upreti, S., Mateo, R., Chakraborty, S. S., Deori, P. & Green, R. E. 2011. Effectiveness of action in India to reduce exposure of Gyps vultures to the toxic veterinary drug diclofenac. – PLoS ONE 6(5): e19069. DOI: 10.1371/journal.pone.0019069309275421589920
  9. Frankham, R. 2005. Resolving the genetic paradox in invasive species. – Heredity 94(4): 385–385. DOI: 10.1038/sj.hdy.680063415602569
  10. García, C. B. & Arruga, M. V. 2006. Comparative genetic analysis between Red-legged Partridges (Alectoris rufa) and Chukar Partridges (Alectoris chukar): Identification of single-nucleotide polymorphisms. – Animal Research 55: 335–342. DOI: 10.1051/animres:2006015
  11. Galligan, T. H., Bhusal, K. P., Paudel, K., Chapagain, D., Joshi, A. B., Chaudhary, I. P., Chaudhary, A., Baral, H. S., Cuthbert, R. J. & Green, R. E. 2020. Partial recovery of Critically Endangered Gyps vulture populations in Nepal. – Bird Conservation International 30: 87–102. DOI: 10.1076SO959270919000169
  12. Geyer, C. J. 1991. Markov chain Monte Carlo maximum likelihood. – In: Kerimidas, E. M. (ed.) Computing Science and Statistics: Proceedings of the 23rd Symposium on the Interface Fairfax Station: Interface Foundation, pp. 156–163.
  13. Gilbert, M., Virani, M. Z., Watson, R. T., Oaks, J. L., Benson, P. C., Khan, A. A., Ahmed, S., Chaudhry, J., Arshad, M., Mahmood, S. & Shah, Q. A. 2002. Breeding and mortality of Oriental White-backed Vulture Gyps bengalensis in Punjab Province, Pakistan. – Bird Conservation International 12(4): 311–326. DOI: 10.1017/S0959270902002198[
  14. Gilbert, M., Watson, R. T., Virani, M. Z., Oaks, J. L., Ahmed, S., Chaudhry, M. J. I., Arshad, M., Mahmood, S., Ali, A. & Khan, A. A. 2004. Rapid population declines and mortality clusters in three Oriental White-backed Vulture Gyps bengalensis colonies in Pakistan due to diclofenac poisoning. – Oryx 40(4): 388–399. DOI: 10.1080/00063657.2011.588685
  15. Godoy, J. A., Negro, J. J., Hiraldo, F. & Donázar, J. A. 2004. Phylogeography, genetic structure and diversity in the endangered Bearded Vulture (Gypaetus barbatus, L.) as revealed by mitochondrial DNA. – Molecular Ecology 13(2): 371–390. DOI: 10.1046/j.1365-294X.2003.02075.x
  16. Green, R. E., Taggart, M. A., Senacha, K. R., Raghavan, B., Pain, D. J., Jhala, Y. & Cuthbert, R. 2007. Rate of decline of the Oriental White-backed Vulture population in India estimated from a survey of diclofenac residues in carcasses of ungulates. – PLoS ONE 2(8): e686. DOI: 10.1371/journal.pone.0000686.193015617668064
  17. Hailer, F., Helander, B., Folkestad, A. O., Ganusevich, S. A., Garstad, S., Hauff, P., Koren, C., Nygård, T., Volke, V., Vilà, C. & Ellegren, H. 2006. Bottlenecked but long-lived: high genetic diversity retained in White-tailed Eagles upon recovery from population decline. – Biology Letters 2(2): 316–319.10.1098/rsbl.2006.0453161892117148392
  18. Harris, R. J. 2013. The conservation of Accipitridae vultures of Nepal: a review. – Journal of Threatened Taxa 5(2): 3603–3619. DOI: 10.11609/JoTT.o2816.3603-19
  19. Johnson, J. A., Gilbert, M., Virani, M. Z., Asim, M. & Mindell, D. P. 2008. Temporal genetic analysis of the critically endangered Oriental White-backed Vulture in Pakistan. – Biological Conservation 141(9): 2403–2409. DOI: 10.1016/j.biocon.2008.07.001
  20. Librado, P. & Rozas, J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. – Bioinformatics 25(11): 1451–1452. DOI: 10.1093/bioinformatics/btp18719346325
  21. Marinković, S. & Karadžar, B. 2008. Griffon Vulture Gyps fulvus Hablizl 1883. – Birds of Prey Protection Found, Special Ed., Vol. 1. – Institute for Biological Research “Siniša Stanković”, Belgrade
  22. Maudet, C., Miller, C., Bassano, B., Breitenmoser-Würsten, C., Gauthier, D., Obexer-Ruff, G., Michallet, J., Taberlet, P. & Luikart, G. 2002. Microsatellite DNA and recent statistical methods in wildlife conservation management: applications in Alpine Ibex [Capra ibex (ibex)]. – Molecular Ecology 11(3): 421–436. DOI: 10.1046/j.0962-1083.2001.01451.x11928708
  23. Mukherjee, A., Galligan, T. H., Prakash, V., Paudel, K., Khan, U., Prakash, S. & Bowden, C. 2014. Vulture safe zones to save Gyps vultures in South Asia. – Mistnet 15(3): 4–21.
  24. Mullis, K., Faloona, F., Scharf, S., Saiki, R. K., Horn, G. T. & Erlich, H. 1986. Specific enzymatic amplification of DNA in vitro: the polymerase chain reaction. – Cold Spring Harbor Symposia on Quantitative Biology 51: 263–273. DOI: 10.1101/sqb.1986.051.01.0323472723
  25. Murn, C., Khan, U. & Farid, F. 2008. Vulture populations in Pakistan and the Gyps vulture restoration project. – Vulture News 58: 35–43.
  26. Murn, C., Saeed, U., Khan, U. & Iqbal, S. 2015. Population and spatial breeding dynamics of a Critically Endangered Oriental White-backed Vulture Gyps bengalensis colony in Sindh Province, Pakistan. – Bird Conservation International 25(4): 415–425. DOI: 10.1017/S0959270914000483
  27. Naidoo, V. & Swan, G. E. 2009. Diclofenac toxicity in Gyps vulture is associated with decreased uric acid excretion and not renal portal vasoconstriction. – Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology 149(3): 269–274. DOI: 10.1016/j.cbpc.2008.07.014
  28. Oaks, J. L., Rideout, B. A., Gilbert, M., Watson, R. T., Virani, M. Z. & Khan, A. A. 2001. Summary of diagnostic investigation into vulture mortality: Punjab Province, Pakistan, 2000–2001. – In: Katzner, T. & Parry-Jones, J. (eds.) Reports from the workshop on Indian Gyps Vultures. – 4th Eurasian Congress on Raptors, Sevilla, Spain, September 2001.
  29. Ogada, D. L., Keesing, F. & Virani, M. Z. 2012. Dropping dead: causes and consequences of vulture population declines worldwide. – Annals of the New YorkAcademy of Sciences 1249: 57–71. DOI: 10.1111/j.1749-6632.2011.06293.x.
  30. Pain, D. J., Bowden, C. G., Cunningham, A. A., Cuthbert, R., Das, D., Gilbert, M. & Green, R. E. 2008. The race to prevent the extinction of South Asian vultures. – Bird Conservation International 18(S1): S30–S48. DOI: 10.1017/S0959270908000324
  31. Pfeiffer, M. B., Venter, J. A. & Downs, C. T. 2015. Identifying anthropogenic threats to Cape Vultures Gyps coprotheres using community perceptions in communal farmland, Eastern Cape Province, South Africa. – Bird Conservation International 25(3): 353–365. DOI: 10.1017/S0959270914000148
  32. Poulakakis, N., Antoniou, A., Mantziou, G., Parmakelis, A., Skartsi, T., Vasilakis, D., Elorriaga, J., De La Puente, J., Gavashelishvili, A., Ghasabyan, M., Katzner, T., McGrady, M., Batbayar, N., Fuller, M. & Natsagdor, J. T. 2008. Population structure, diversity, and phylogeography in the near-threatened Eurasian Black Vultures Aegypius monachus (Falconiformes; Accipitridae) in Europe: insights from microsatellite and mitochondrial DNA variation. – Biological Journal of the Linnean Society 95(4): 859–872. DOI: 10.1111/j.1095-8312.2008.01099.x
  33. Prakash, V. 1999. Status of vultures in Keoladeo National Park, Bharatpur, Rajasthan, with special reference to population crash in Gyps species. – The Journal of Bombay Natural History Society 96: 365–378.
  34. Prakash, V., Green, R. E., Pain, D. J., Ranade, S. P. & Saravanan, S. 2007. Recent changes in populations of resident Gyps vultures in India. – Journal of the Bombay Natural History Society 104: 129–135. DOI: 10.1017/S0959270917000545.
  35. Prakash, V., Pain, D. J., Cunningham, A. A., Donald, P. F., Prakash, N., Verma, A., Gargi, R., Sivakumar, S. & Rahmani, A. R. 2003. Catastrophic collapse of Indian White-backed Gyps bengalensis and Long-billed Gyps indicus vulture populations. – Biological Conservation 109: 381–390. DOI: 10.1016/S0006-3207(02)00164-7
  36. Rogers, A. R. & Harpending, H. 1992. Population growth makes waves in the distribution of pairwise genetic differences. – Molecular Biology and Evolution 9(3): 552–569. DOI: 10.1093/oxfordjournals.molbev.a0407271316531
  37. Sefc, K. M., Payne, R. B. & Sorenson, M. D. 2003. Microsatellite amplification from museum feather samples: effects of fragment size and template concentration on genotyping errors. – The Auk 120(4): 982–989. DOI: 10.1093/auk/120.4.982.
  38. Slatkin, M. & Hudson, R. R. 1991. Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. – Genetics 129(2): 555–562. DOI: 10.1093/genetics/129.2.555.12046431743491
  39. Susan, M. H., Whitcomb, M. B., Rachel, S. C., Jesse, D., Collin, A. E., Clinton, W. E., Brian, K. M. P., Miller, M. L., Moses, S. O. M., Douglas, W. R. & Brian, S. 2011. Genetic applications in avian conservation. – The Auk 128(2): 205–229. DOI: 10.1525/auk.2011.128.2.205
  40. Swan, G., Naidoo, V., Cuthbert, R., Green, R. E., Pain, D. J., Swarup, D., Prakash, V., Taggart, M., Bekker, L., Das, D., Diekmann, J., Diekmann, M., Killian, E., Mehard, A., Patra, R. C., Saini, M. & Wolter, K. 2006. Removing the threat of diclofenac to critically endangered Asian vultures. – PLoS Biol 4(3): e66. DOI: 10.1371/journal.pbio.0040066135192116435886
  41. Tamura, K., Stecher, G., Peterson, D., Filipski, A. & Kumar, S. 2013. MEGA6: molecular evolutionary genetics analysis version 6.0. – Molecular Biology and Evolution 30(12): 2725–2729. DOI: 10.1093/molbev/mst197384031224132122
  42. Thakur, M. L. & Narang, S. K. 2012. Population status and habitat-use pattern of Indian White-backed Vulture (Gyps bengalensis) in Himachal Pradesh, India. – Journal of Ecology and the Natural Environment 4(7): 173–180. DOI: 10.5897/JENE11.103.
  43. Untergasser, A., Cutcutache, I., Koressaar, T., Ye, J., Faircloth, B. C., Remm, M. & Rozen, S. G. 2012. Primer 3 new capabilities and interfaces. – Nucleic Acids Research 40(15):e 115. DOI: 10.1093/nar/gks596342458422730293
  44. Väli, Ü., Dombrovski, V., Treinys, R., Bergmanis, U., Daróczi, S. J., Dravecky, M., Ivanovski, V., Lontkowski, J., Maciorowski, G. & Meyburg, B-U. 2010. Wide-spread hybridization between the Greater Spotted Eagle Aquila clanga and the Lesser Spotted Eagle Aquila pomarina (Aves: Accipitriformes) in Europe. – Biological Journal of the Linnean Society 100: 725–736. DOI: 10.1111/j.1095-8312.2010.01455.x
  45. Wink, M. 1995. Phylogeny of Old and New World vultures (Aves: Accipitridae and Cathartidae) inferred from nucleotide sequences of the mitochondrial cytochrome b gene. – Zeitschrift fur Naturforschung C-Journal of Biosciences 50(11): 868–882.10.1515/znc-1995-11-12208561830
DOI: https://doi.org/10.2478/orhu-2022-0010 | Journal eISSN: 2061-9588 | Journal ISSN: 1215-1610
Language: English
Page range: 135 - 145
Submitted on: Nov 4, 2021
Accepted on: Mar 18, 2022
Published on: Jun 30, 2022
Published by: MME/BirdLife Hungary
In partnership with: Paradigm Publishing Services
Publication frequency: 2 issues per year

© 2022 Tanveer Hussain, Masroor Ellahi Babar, Muneeb Musthafa, Abdul Wajid, Hassan Ali Sukhera, Jamshed Iqbal Chaudhry, Muhammad Rizwan Khan, Faiz M. M. T. Marikar, published by MME/BirdLife Hungary
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.