Fig. 1.

Fig. 2.

Distribution of virulence and resistance gene profiles of Staphylococcus aureus strains
| Host (n) | Clonal complex | Sequence type/n | Methicillin resistance | Multidrug resistance | Vancomycin intermediate resistance | Virulence gene profile | Profile component genes | Resistance genes |
|---|---|---|---|---|---|---|---|---|
| 1 | 9/1 | – | + | – | XV | icaA, icaD, icaR, clfA, eno | blaZ | |
| 1 | 9/1 | – | + | – | XV | icaA, icaD, icaR, clfA, eno | blaZ, tetM | |
| 1 | 9/2 | – | + | – | XVI | icaA, icaD, icaR, clfA, fnbpA, fib, eno, sdrC | blaZ, tetM | |
| 1 | 9/2 | – | + | – | XVII | icaA, icaD, icaR, clfA, fnbpA, fib, eno | blaZ, tetM | |
| 1 | 9/1 | – | + | – | XIX | icaA, icaD, icaR, clfA, fnbpA, cidA, fib, eno | blaZ, tetM | |
| 1 | 9/1 | – | + | – | XX | icaA, icaD, icaR, clfA, fnbpA, cidA, fib, eno, sdrC | blaZ, tetM | |
| 1 | 2423/2 | – | + | – | XV | icaA, icaD, icaR, clfA, eno | ermC | |
| 398/1 | + | + | – | XXI | lukED, hla, hlb, icaA, icaR, clfA, cna, eno | mecA, mecC, blaZ, ermB, tetM, tetK, aac | ||
| Pig | 398/1 | + | + | – | XXII | hla, hlb, icaA, icaD, icaR, clfA, fnbpA, fib, cna, eno | mecA, mecC, blaZ, ermB, tetM, tetK | |
| 398/1 | + | + | – | XXIII | hla, hlb, icaA, icaD, icaR, clfA, fnbpB, cna, eno | mecA, mecC, blaZ, ermB, tetM, tetK | ||
| 398/30 | + | + | – | XII | SeC, hla, hlb, icaA, icaB, icaD, icaR, clfA, fnbpA, fnbpB, cidA, cna, ebpS, eno, sdrC, sdrE | mecA, mecC, blaZ, ermA, ermB, tetM, tetK | ||
| 398/6 | + | + | – | XIII | hla, hlb, icaA, icaD, icaR, clfA, fnbpB, cna, eno | mecA, mecC, blaZ, ermA, ermB, tetM, tetK | ||
| 8135/1 | – | + | – | XIV | icaA, icaD, icaR, clfA, cna, eno | blaZ, ermC, tetM | ||
| ND/1 | – | – | – | XVIII | icaA, icaD, icaR, clfA, fnbpA, fnbpB, fib, eno | blaZ | ||
| 133/1 | – | – | + | IV | icaA, icaB, icaD, icaR, clfA, clfB, fnbpA, cidA, fib, ebpS, eno, sdrC, sdrE | - | ||
| 479/1 | – | – | + | VI | lukED, hla, hlb, icaA, icaB, icaD, icaR, clfA, clfB, fnbpA, cidA, fib, cna, eno | - | ||
| 398/1 | + | + | – | VII | icaA, icaD, icaR, clfA, fnbpA, fib, eno | mecA, mecC, blaZ, tetM, tetK | ||
| 8139/1 | – | – | + | III | icaA, icaB, icaD, icaR, clfA, clfB, fnbpA, fnbpB, cidA, fib, ebpS, eno, sdrC | blaZ | ||
| 8139/2 | – | – | + | I | icaA, icaB, icaD, icaR, clfA, clfB, fnbpA, cidA, fib, cna, ebpS, eno, sdrC, sdrE | - | ||
| Cow | ND/1 | – | – | – | III | icaA, icaB, icaD, icaR, clfA, clfB, fnbpA, fnbpB, cidA, fib, ebpS, eno, sdrC | tetM, tetK | |
| ND/13 | – | – | – | I | icaA, icaB, icaD, icaR, clfA, clfB, fnbpA, cidA, fib, cna, ebpS, eno, sdrC, sdrE | - | ||
| ND/1 | – | – | – | V | icaA, icaB, icaD, icaR, clfA, clfB, fnbpA, cidA, fib, cna, eno | - | ||
| ND/11 | – | – | – | IV | icaA, icaB, icaD, icaR, clfA, clfB, fnbpA, cidA, fib, ebpS, eno, sdrC, sdrE | - | ||
| ND/3 | – | – | – | II | icaA, icaB, icaD, icaR, clfA, clfB, fnbpA, cidA, fib, ebpS, eno, sdrC | - | ||
| ND/1 | – | – | – | III | icaA, icaB, icaD, icaR, clfA, clfB, fnbpA, fnbpB, cidA, fib, ebpS, eno, sdrC | - | ||
| ND/1 | – | – | – | IX | icaA, icaB, icaD, icaR, clfA, clfB, fnbpA, fnbpB, cidA, fib, cna, ebpS, eno, sdrC, sdrE | blaZ, tetM, tetK | ||
| ND/8 | – | – | – | VIII | icaA, icaB, icaD, icaR, clfA, clfB, fnbpA, cidA, fib, cna, ebpS, eno, sdrE | - | ||
| Wild deer | ND/1 | – | – | – | X | icaA, iaB, icaD, icaR, clfA, clfB, fnbpA, fnbpB, cidA, fib, cna, ebpS, eno, sdrC | - | |
| ND/1 | – | – | – | IV | icaA, icaB, icaD, icaR, clfA, clfB, fnbpA, cidA, fib, ebpS, eno, sdrC, sdrE | - | ||
| ND/1 | – | – | – | XI | icaA, icaB, icaD, icaR, clfA, clfB, fnbpA, cidA,fib, cna, ebpS, eno | - |
Virulence factors and encoding genes tested for in Polish livestock-and wildlife-originating Staphylococcus aureus strains
| Virulence factor | Encoding gene(s) |
|---|---|
| Staphylococcus enterotoxins A–E | SeA, SeB, SeC, SeD, and SeE |
| Toxic shock syndrome toxin | Tst |
| Exfoliative toxin | Et |
| Panton–Valentine leukocidin components S and F | lukS-PV-lukF-PV |
| Leukocidin ED | lukE and lukD |
| Biofilm-associated protein | bap |
| α-haemolysin | hla |
| β-haemolysin | hlb |
| Polysaccharide intercellular adhesin | icaABCD and icaR |
| Clumping factors A and B | clfA and clfB |
| Fibronectin-binding proteins A and B | fnbpA and fnbpB |
| Murein hydrolase regulator | cidA |
| Collagen-binding protein | cna |
| Staphylococcus elastin-binding protein | ebpS |
| Laminin-binding protein | eno |
| Serine-aspartate repeat proteins | sdrC, sdrD and sdrE |
Spearman’s rank correlation coefficient in the context of Staphylococcus aureus characteristics
| Biofilm | MRSA | SeC | lukED | hla | hlb | icaB | icaD | clfB | fnbpA | fnbpB | cidA | fib | cna | ebpS | sdrC | sdrE | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Biofilm | - | –0.36* | –0.35* | 0.05 | –0.36* | –0.35* | 0.24* | 0.07 | 0.51* | 0.19 | –0.32* | 0.27* | 0.43* | –0.24* | 0.21* | 0.08 | 0.01 |
| MRSA | –0.36* | - | 0.92* | 0.03 | 0.96* | 0.94* | 0.18 | –0.12 | –0.76* | 0.07 | 0.81* | 0.14 | –0.75* | 0.57* | 0.21* | 0.31* | 0.32* |
| SeC | –0.35* | 0.92* | - | –0.11 | 0.92* | 0.89* | 0.32* | 0.08 | –0.73* | 0.21* | 0.86* | 0.29* | –0.70* | 0.52* | 0.34* | 0.42* | 0.43* |
| lukED | 0.05 | 0.03 | –0.11 | - | 0.17 | 0.18 | –0.14 | –0.70* | 0.01 | –0.24* | –0.13 | –0.16 | –0.03 | 0.10 | –0.31* | –0.26* | –0.09 |
| hla | –0.36* | 0.96* | 0.92* | 0.17 | - | 0.98* | 0.18 | –0.12 | –0.76* | 0.07 | 0.81* | 0.14 | –0.70* | 0.57* | 0.16 | 0.26* | 0.32* |
| hlb | –0.35* | 0.94* | 0.89* | 0.18 | 0.98* | - | –0.17 | –0.12 | –0.74* | 0.06 | 0.79* | 0.13 | –0.68* | 0.56* | 0.15 | 0.25* | 0.31* |
| icaB | 0.24* | 0.18 | 0.32* | –0.14 | 0.18 | –0.17 | - | 0.24* | 0.41* | 0.65* | 0.26* | 0.92* | 0.07 | 0.37* | 0.93* | 0.57* | 0.75* |
| icaD | 0.07 | –0.12 | 0.08 | –0.70* | –0.12 | –0.12 | 0.24* | - | 0.10 | 0.37* | 0.09 | 0.26* | 0.13 | –0.07 | 0.22* | 0.18 | 0.18 |
| clfB | 0.51* | –0.76* | –0.73* | 0.01 | –0.76* | –0.74* | 0.41* | 0.10 | - | 0.27* | –0.65* | 0.38* | 0.72* | –0.24* | 0.33* | 0.01 | 0.12 |
| fnbpA | 0.19 | 0.07 | 0.21* | –0.24* | 0.07 | 0.06 | 0.65* | 0.37* | 0.27* | - | 0.16 | 0.71* | 0.35* | 0.15 | 0.60* | 0.50* | 0.49* |
| fnbpB | –0.32* | 0.81* | 0.86* | –0.13 | 0.81* | 0.79* | 0.26* | 0.09 | –0.65* | 0.16 | - | 0.22* | –0.61* | 0.34* | 0.29* | 0.38* | 0.21* |
| cidA | 0.27* | 0.14 | 0.29* | –0.16 | 0.14 | 0.13 | 0.92* | 0.26* | 0.38* | 0.71* | 0.22* | - | 0.12 | 0.30* | 0.85* | 0.56* | 0.69* |
| fib | 0.43* | –0.75* | –0.70* | –0.03 | –0.70* | –0.68* | 0.07 | 0.13 | 0.72* | 0.35* | –0.61* | 0.12 | - | –0.37* | 0.03 | –0.09 | –0.11 |
| cna | –0.24* | 0.57* | 0.52* | 0.10 | 0.57* | 0.56* | 0.37* | –0.07 | –0.24* | 0.15 | 0.34* | 0.30* | –0.37* | - | 0.31* | 0.03 | 0.52* |
| ebpS | 0.21* | 0.21* | 0.34* | –0.31* | 0.16 | 0.15 | 0.93* | 0.22* | 0.33* | 0.60* | 0.29* | 0.85* | 0.03 | 0.31* | - | 0.64* | 0.74* |
| sdrC | 0.08 | 0.31* | 0.42* | –0.26* | 0.26* | 0.25* | 0.57* | 0.18 | 0.01 | 0.50* | 0.38* | 0.56* | –0.09 | 0.03 | 0.64* | - | 0.47* |
| sdrE | 0.01 | 0.32* | 0.43* | –0.09 | 0.32* | 0.31* | 0.75* | 0.18 | 0.12 | 0.49* | 0.21* | 0.69* | –0.11 | 0.52* | 0.74* | 0.47* | - |
Occurrence of virulence genes in Polish livestock- and wildlife-originating Staphylococcus aureus strains
| Virulence gene (n/%) | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SeC* | lukED | hla* | hlb* | icaA | icaB | icaD | icaR | clfA | clfB* | fnbpA | fnbpB* | cidA | fib* | cna | ebpS | eno | sdrC* | sdrE | |
| Pigs (n=51) | 36/71 | 1/2 | 39/76 | 39/76 | 51/100 | 36/71 | 50/98 | 51/100 | 51/100 | 44/86 | 38/75 | 38/75 | 14/27 | 40/78 | 36/71 | 51/100 | 39/76 | 36/71 | |
| Cows (n=36) | 1/3 | 1/3 | 1/3 | 36/100 | 36/100 | 36/100 | 36/100 | 36/100 | 36/100 | 36/100 | 3/8 | 36/100 | 35/97 | 18/50 | 34/94 | 36/100 | 34/94 | 29/81 | |
| Wild deer (n=12) | 12/100 | 12/100 | 12/100 | 12/100 | 12/100 | 12/100 | 12/100 | 2/17 | 12/100 | 12/100 | 9/75 | 12/100 | 12/100 | 3/25 | 10/83 | ||||
| Total (n=99) | 36/36 | 2/2 | 40/40 | 40/40 | 99/100 | 84/85 | 98/99 | 99/100 | 99/100 | 48/48 | 92/93 | 43/43 | 86/87 | 61/62 | 67/68 | 82/83 | 99/100 | 76/77 | 75/76 |
Virulence gene profiles of Staphylococcus aureus strains (n/%)
| Profile | Gene content | Pigs (n=51) | Cows (n=36) | Wild deer (n=12) | Total (n=99) |
|---|---|---|---|---|---|
| I | icaA, icaB, icaD, icaR, clfA, clfB, fnbpA, cidA, fib, cna, ebpS, eno, sdrC, sdrE | 15/42 | 15/15 | ||
| II | icaA, icaB, icaD, icaR, clfA, clfB, fnbpA, cidA, fib, ebpS, eno, sdrC | 3/8 | 3/3 | ||
| III | icaA, icaB, icaD, icaR, clfA, clfB, fnbpA, fnbpB, cidA, fib, ebpS, eno, sdrC | 3/8 | 3/3 | ||
| IV | icaA, icaB, icaD, icaR, clfA, clfB, fnbpA, cidA, fib, ebpS, eno, sdrC, sdrE | 12/33 | 1/8 | 13/13 | |
| V | icaA, icaB, icaD, icaR, clfA, clfB, fnbpA, cidA, fib, cna, eno | 1/3 | 1/1 | ||
| VI | lukED, hla, hlb, icaA, icaB, icaD, icaR, clfA, clfB, fnbpA, cidA, fib, cna, eno | 1/3 | 1/1 | ||
| VII | icaA, icaB, icaD, icaR, clfA, clfB, fnbpA, cidA, cna, ebpS, eno, sdrC, sdrE | 1/3 | 1/1 | ||
| VIII | icaA, icaB, icaD, icaR, clfA, clfB, fnbpA, cidA, fib, cna, ebpS, eno, sdrE | 8/67 | 8/8 | ||
| IX | icaA, icaB, icaD, icaR, clfA, clfB, fnbpA, fnbpB, cidA, fib, cna, ebpS, eno, sdrC, sdrE | 1/8 | 1/1 | ||
| X | icaA, iaB, icaD, icaR, clfA, clfB, fnbpA, fnbpB, cidA, fib, cna, ebpS, eno, sdrC | 1/8 | 1/1 | ||
| XI | icaA, icaB, icaD, icaR, clfA, clfB, fnbpA, cidA, fib, cna, ebpS, eno | 1/8 | 1/1 | ||
| XII | SeC, hla, hlb, icaA, icaB, icaD, icaR, clfA, fnbpA, fnbpB, cidA, cna, ebpS, eno, sdrC, sdrE | 30/59 | 30/30 | ||
| XIII | SeC, hla, hlb, icaA, icaB, icaD, icaR, clfA, fnbpA, fnbpB, cidA, fib, cna, ebpS, eno, sdrC, sdrE | 6/12 | 6/6 | ||
| XIV | icaA, icaD, icaR, clfA, cna, eno | 1/2 | 1/1 | ||
| XV | icaA, icaD, icaR, clfA, eno | 4/8 | 4/4 | ||
| XVI | icaA, icaD, icaR, clfA, fnbpA, fib, eno, sdrC | 2/4 | 2/2 | ||
| XVII | icaA, icaD, icaR, clfA, fnbpA, fib, eno | 2/4 | 2/2 | ||
| XVIII | icaA, icaD, icaR, clfA, fnbpA, fnbpB, fib, eno | 1/2 | 1/1 | ||
| XIX | icaA, icaD, icaR, clfA, fnbpA, cidA, fib, eno | 1/2 | 1/1 | ||
| XX | icaA, icaD, icaR, clfA, fnbpA, cidA, fib, eno, sdrC | 1/2 | 1/1 | ||
| XXI | lukED, hla, hlb, icaA, icaR, clfA, cna, eno | 1/2 | 1/1 | ||
| XXII | hla, hlb, icaA, icaD, icaR, clfA, fnbpA, fib, cna, eno | 1/2 | 1/1 | ||
| XXIII | hla, hlb, icaA, icaD, icaR, clfA, fnbpB, cna, eno | 1/2 | 1/1 |
Bacteriocins used in this study
| Bacteriocin | Producer bacteria | Source of isolation |
|---|---|---|
| Ent412 | Enterococcus faecium EF412 | faecal strain from a Slovak warmblood horse |
| EntM/AL41 | E. faecium AL41/CCM8558 | environment |
| Ent7420 | E. faecium EF2019/CCM7420 | rabbit faeces |
| EntA(P)/EK 13 | E. faecium EK13=CCM7419 | environment |
| Ent55 | E. faecium EF55 | gastrointestinal tract of a chicken |
| Ent4231 | E. faecium CCM4231 | rumen of a calf |
| EM41/3 | E. mundtii EM41/3 | faeces of a horse of the Norik of Muran breed |
| Ent. as.1 | E. asini EAs 1/11D27 | inner part of the auricle mucosa of a mare of the Norik of Muran breed |
| Ent. sacch. | E. saccharolyticus Es 3/11D27 | inner part of the auricle mucosa of a mare of the Norik of Muran breed |
| L.l MK 2/81 | L. lactis | raw goat milk |
| L.l MK 2/21 | L. lactis | raw goat milk |
| L.l MK 2/71 | L. lactis | raw goat milk |
| nisin | L. lactis (from Nisaplin) | commercial strain |