Fig. 1.

Within-herd prevalence of respiratory pathogens in PCR-positive Polish pig herds
Pathogen | Number of positive farms (of 22 total) | Within-herd prevalence (%) | 95% confidence interval | Range | Median |
---|---|---|---|---|---|
APP | 1 | 20.0 | N/A | N/A | N/A |
GLAS | 21 | 67.6 | 55.8–79.4 | 10.0–95.0 | 75.0 |
MHP | 21 | 92.4 | 85.7–99.1 | 35.0–100 | 100 |
MHR | 15 | 17.3 | 11.4–23.2 | 5.0–45.0 | 15.0 |
STREP | 2 | 27.5 | 17.1–37.9 | 20.0–35.0 | 27.5 |
PRRSV1 | 12 | 40.0 | 23.0–57.0 | 5.0–100 | 30.0 |
PRRSV2 | 2 | 22.5 | 5.2–39.8 | 10.0–35.0 | 22.5 |
PCV2 | 19 | 51.3 | 36.6–66.0 | 5.0–100 | 45.0 |
PCV3 | 21 | 32.4 | 22.4–42.4 | 5.0–80.0 | 20.0 |
swIAV | 2 | 20.0 | 13.1–26.9 | 15.0–25.0 | 20.0 |
Oligonucleotide primer and probe sequences used for detection of pathogens causing cranioventral pulmonary consolidation in slaughtered Polish pigs
Pathogen | Target (gene) | Oligonucleotide sequence (5′–3′) | Reference |
---|---|---|---|
APP | apxIVA | apxIVANEST1-F: GGGGACGTAACTCGGTGATT | (42) |
GLAS | infB | CTinfF1: CGACTTACTTGAAGCCATTCTTCTT | (44) |
MHP | p102 | P102f: GTCAAAGTCAAAGTCAGCAAAC | (24) |
MHR | p37 | Mhr-p37-RT-F: TATCTCATTGACCTTGACTAAC | (43) |
STREP | recN | SSrecN-F: CTACAAACAGCTCTCTTCT | (13) |
PCV2 | ORF1 | P1570: TGGCCCGCAGTATTCTGATT | (29) |
PCV3 | rep | PCV3_353_F: TGACGGAGACGTCGGGAAAT | (8) |
swIAV | M gene | IAV-M1-F: AGATGAGTCTTCTAACCGAGGTCG | (16) |
Combinations of swine respiratory pathogens at the farm level in slaughtered Polish pigs examined by PCR
Combination of pathogens | Number of positive farms (of 22 total) | Prevalence (%) | 95% Confidence interval |
---|---|---|---|
APP+GLAS+MHP+MHR+PRRSV1+PCV2+PCV3 | 1 | 4.5 | 0.8–21.8 |
GLAS+MHP+MHR+PRRSV1+PCV2+PCV3 | 7 | 31.8 | 16.4–52.6 |
GLAS+MHP+MHR+PRRSV1+PCV3+swIAV | 1 | 4.5 | 0.8–21.8 |
GLAS+MHP+PRRSV1+PCV2+PCV3+swIAV | 1 | 4.5 | 0.8–21.8 |
GLAS+MHP+MHR+PCV2+PCV3 | 3 | 13.6 | 4.7–33.3 |
GLAS+MHP+MHR+PRRSV2+PCV2 | 1 | 4.5 | 0.8–21.8 |
GLAS+MHP+PRRSV1+PCV2+PCV3 | 1 | 4.5 | 0.8–21.8 |
GLAS+MHP+PRRSV2+PCV2+PCV3 | 1 | 4.5 | 0.8–21.8 |
GLAS+MHP+STREP+PCV2+PCV3 | 1 | 4.5 | 0.8–21.8 |
GLAS+MHP+STREP+PRRSV1+PCV3 | 1 | 4.5 | 0.8–21.8 |
GLAS+MHP+MHR+PCV2+PCV3 | 1 | 4.5 | 0.8–21.8 |
GLAS+MHP+MHR+PCV2 | 1 | 4.5 | 0.8–21.8 |
MHP+PCV2+PCV3 | 1 | 4.5 | 0.8–21.8 |
GLAS+PCV2+PCV3 | 1 | 4.5 | 0.8–21.8 |
Mean cranioventral pulmonary consolidation (CVPC) scores for different patterns of co-infection detected in the lungs of slaughtered Polish pigs
Pattern of co-infection | Number of pigs affected (of 440 total) | Mean CVPC score (± SD) | P-value* |
---|---|---|---|
GLAS+MHP+MHR+PCV2 | 5 | 9.00 | 0.0517 |
MHP+MHR+PCV3 | 1 | 9.00 | 0.2065 |
MHP+MHR+PCV2 | 1 | 8.00 | 0.2519 |
GLAS+MHP+MHR+PRRSV2 | 1 | 8.00 | 0.2519 |
GLAS+MHP+MHR+PRRSV1+PCV2 | 4 | 7.25 | 0.4248 |
GLAS+MHP+PRRSV2 | 1 | 7.00 | 0.3020 |
GLAS+MHP+PRRSV1+PCV3 | 13 | 6.46 | 0.0321 |
GLAS+MHP+PRRSV1+PCV2+PCV3 | 5 | 6.20 | 0.5488 |
GLAS+MHP+PRRSV1+PCV2 | 13 | 6.08 | 0.3212 |
APP+MHP+PRRSV1 | 2 | 6.00 | 0.2924 |
MHP+PRRSV1+PCV2 | 1 | 6.00 | 0.3729 |
GLAS+STREP+PCV2+PCV3 | 1 | 6.00 | 0.3729 |
GLAS+MHP+MHR+PCV3 | 4 | 5.75 | 0.1654 |
MHP+PRRSV1+PCV2+PCV3 | 2 | 5.50 | 0.9606 |
MHP+MHR | 2 | 5.00 | 0.8483 |
GLAS+MHP+PRRSV2+PCV2 | 1 | 5.00 | 0.4993 |
MHP+PRRSV1+PCV3+swIAV | 1 | 5.00 | 0.4993 |
GLAS+MHP+MHR | 20 | 4.95 | 0.5113 |
MHP+PRRSV1 | 13 | 4.85 | 0.5047 |
GLAS+MHP+MHR+PCV2+PCV3 | 6 | 4.67 | 0.7993 |
MHP+PRRSV2 | 2 | 4.50 | 0.4687 |
GLAS+MHP+MHR+PRRSV1 | 2 | 4.50 | 0.7305 |
GLAS+MHP+MHR+PRRSV1+PCV3 | 2 | 4.50 | 0.8652 |
MHP | 38 | 4.16 | reference |
PCV3 | 1 | 4.00 | 0.7172 |
MHP+PRRSV1+PCV3 | 3 | 4.00 | 0.8763 |
MHP+MHR+PCV2+PCV3 | 2 | 4.00 | 0.6539 |
APP+GLAS+MHP+PRRSV1+PCV2 | 1 | 4.00 | 0.7172 |
GLAS+MHP+PRRSV1+PCV3+swIAV | 4 | 4.00 | 0.9670 |
MHP+PCV3 | 19 | 3.95 | 0.9260 |
MHP+STREP | 3 | 3.67 | 0.8244 |
GLAS+MHP+PRRSV1 | 27 | 3.48 | 0.4428 |
MHP+PCV2+PCV3 | 17 | 3.47 | 0.7309 |
GLAS+MHP+PCV2 | 35 | 3.37 | 0.3623 |
GLAS+MHP+PCV3 | 9 | 3.33 | 0.5240 |
GLAS+MHP | 58 | 3.17 | 0.2953 |
GLAS+MHP+PCV2+PCV3 | 30 | 3.07 | 0.2003 |
MHP+PCV2 | 26 | 3.04 | 0.3147 |
MHP+MHR+PRRSV1 | 1 | 3.00 | 0.9734 |
MHP+PRRSV2+PCV3 | 4 | 3.00 | 0.9067 |
GLAS | 4 | 2.00 | 0.2558 |
GLAS+MHP+swIAV | 1 | 2.00 | 0.5901 |
GLAS+MHP+STREP+PCV2 | 2 | 2.00 | 0.4519 |
APP+MHP+PRRSV1+PCV2+PCV3 | 1 | 2.00 | 0.5901 |
GLAS+MHP+STREP | 4 | 1.75 | 0.1960 |
GLAS+PCV2+PCV3 | 7 | 1.14 | 0.0199 |
GLAS+PCV2 | 21 | 1.05 | 0.0002 |
PCV2+PCV3 | 4 | 1.00 | 0.0526 |
MHP+PCV2+swIAV | 1 | 1.00 | 0.3226 |
PCV2 | 8 | 0.38 | 0.0006 |
None | 2 | 0.50 | 0.0807 |
swIAV | 1 | 0.00 | 0.1320 |
GLAS+MHR | 1 | 0.00 | 0.1320 |
GLAS+STREP | 1 | 0.00 | 0.1320 |
GLAS+PRRSV1+PCV2 | 1 | 0.00 | 0.1320 |