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The genetic variability of small-ruminant lentiviruses and its impact on tropism, the development of diagnostic tests and vaccines and the effectiveness of control programmes Cover

The genetic variability of small-ruminant lentiviruses and its impact on tropism, the development of diagnostic tests and vaccines and the effectiveness of control programmes

Journal of Veterinary Research
Volume 67 (2023): Issue 4 (December 2023)
By:   
Open Access
|Dec 2023
Figures & tables

Figures & Tables

Table 1.

Overview of SRLV subtypes

SubtypeCountry of originSpeciesGenomic fragments used for classificationReferences
A1MexicoGoatsgag (578 bp)2
ItalyGoatsgag (800 bp)63
BelgiumSheep and goatsgag-pol (1.8 kb), pol (1.2 kb)97
PolandGoatsgag (625 bp), env (~400 bp)125
BrazilGoatspol (239 bp)68
IcelandSheepgag-pol (1.8 kb), pol (1.2 kb), RT (~300bp)162
A2MexicoSheepgag (578 bp)2
ChinaSheepWhole genome179
BrazilSheepLTR (460 bp)30
TurkeySheepgag (800 bp)111
CanadaSheep and goatsgag (1200 bp)159
ChinaSheepwhole genome177
North AmericaSheepgag-pol (1.8 kb), pol (1.2 kb), RT (~300bp)162
A3TurkeySheepgag (800 bp)111
ItalySheepgag-pol (800 bp)15
SwitzerlandSheep and goatsgag-pol (1.8 kb), pol (1.2 kb), RT (~300bp)162
A2/A3Czech RepublicSheep and goatsgag-pol (800 bp)14
SpainSheepgag-pol (800 bp)52
A4SwitzerlandSheep and goatsgag-pol (1.8 kb), pol (1.2 kb), RT (~300bp)162
GermanySheepgag (~400 bp)104
A5SloveniaSheepgag-pol (1.8 kb), pol (1.2 kb)80
TurkeySheepgag (800 bp)111
ItalyGoatsgag-pol (800 bp)15
PolandGoatsgag (625 bp)118
GermanySheepgag (~400 bp)102
SwitzerlandGoatsgag-pol (1.8 kb), pol (1.2 kb), RT (~300bp)162
A6FranceSheep and goatsRT (~300 bp)162
A7SwitzerlandGoatspol (1. 2 kb)162
A8ItalyGoatsgag (800 bp)17
A9ItalySheep and goatsgag-pol (800 bp)15
TurkeySheepgag (800 bp)111
A10ItalyGoatspol (1. 2 bp)144
A11TurkeySheepgag (800 bp)111
ItalySheep and goatsgag-pol (800 bp)54
GermanySheepgag (~400 bp)102
A12PolandSheep and goatsgag (625 bp), env (610 bp)119
A13PolandSheepgag (625 bp), env (~400 bp)125
A14SloveniaGoatsgag-pol (1.8 kb), pol (1.2 kb)80
A15SloveniaSheepgag-pol (1.8 kb), pol (1.2 kb)80
A16PolandGoatsgag (625 bp), env (~400 bp)128
GermanySheepgag (~400 bp)102
A17PolandGoatsgag (625 bp), env (~400 bp)128
A18PolandSheepgag (625 bp)128
A19*ItalyGoatsFull genome, gag-pol (800 bp)15, 34
A20*ItalySheep and goatsgag-pol (800 bp)15, 34
A21GermanySheepgag (~400 bp)102
A22IranSheepgag (~400 bp)102
A23ItalySheep and goatsgag-pol (800 bp)15
A24ItalySheepgag-pol (800 bp)15
A25*PolandSheepgag (625 bp)119
A26*PolandSheepgag (625 bp), env (610 bp)119
A27PolandGoatsgag (625 bp), env (610 bp)122
B1JapanGoatsgag (~529 bp)79
MexicoSheep and goatsLTR (300 bp), gag (578 bp)2, 96
ItalySheep and goatsgag-pol (800 bp)101
SloveniaGoatsgag-pol (1.8 kb), pol (1.2 kb)80
CanadaGoatsgag (1200 bp)159
BelgiumGoatsgag-pol (1.8 kb), pol (1.2 kb)97
PhilippinesGoatspartial gag133
U.S.Sheep and goatsgag-pol (1.8 kb), pol (1.2 kb)162
BrazilSheep and goatsenv (~400bp), gag (625 bp)22
PolandGoatsgag (625 bp)128
FranceGoatsRT (~300 bp)162
B2SpainSheepgag-pol (1.8 kb), pol (1.2 kb)57
ItalySheepgag-pol (800 bp)15
Czech RepublicSheepgag-pol (800 bp)14
PolandSheep and goatsgag (625 bp)119
SwitzerlandSheepgag-pol (1.8 kb), pol (1.2 kb)162
FranceSheep and goatsRT (~300 bp)162
B3ItalySheep and goatsgag-pol (800 bp)15
B4CanadaGoatsgag-pol (1.8 kb), pol (1.2 kb)90
B5BelgiumGoatsgag-pol (1.8 kb), pol (1.2 kb)97
CNorwaySheep and goatspol (710 bp), tat-env (2.1–2.4 kp)55
DSwitzerlandSheep and goatspol (1.2 kb)162
E1ItalyGoatsgag-pol (800 bp)63
E2ItalyGoatsgag-pol (800 bp)63

1 bp – base pairs; kp – kilobase pairs; RT – reverse transcriptase; LTR – long terminal repeats;

1* – two subtypes A18 were published by two research groups. The A18 found by Colitti et al. (34) was renamed to A19, and similarly the A19 identified by them was renamed to A20. Furthermore, subtypes A23 and A24 were also defined by two research groups at the same time. The subtypes found by Olech et al. (128) were renamed from A23 to A25 and from A24 to A26

DOI: https://doi.org/10.2478/jvetres-2023-0064 | Journal eISSN: 2450-8608 (formerly 2300-3235)
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Language: English
Page range: 479 - 502
Submitted on: Jun 19, 2023
Accepted on: Nov 13, 2023
Published on: Dec 19, 2023
Published by: National Veterinary Research Institute in Pulawy
In partnership with: Paradigm Publishing Services
Keywords:
SRLV,
control,
diagnosis,
pathogenesis,
variability
Related subjects:
Life sciences,
Molecular biology,
Microbiology and virology,
Life sciences, other,
Medicine,
Veterinary medicine

© 2023 Monika Olech, published by National Veterinary Research Institute in Pulawy
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

Volume 67 (2023): Issue 4 (December 2023)
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