
Fig. 1.
Map indicating the sample collection area within the Czech Republic (a) and locations of the four sample collection sites (Apiaries 1–4) along with their respective GPS locations (b)
Table 1.
Primers and probes used in the qPCR and PCR reactions
| Target virus | Method | Primer/probe | Target region | Reference |
|---|---|---|---|---|
| DWV | qPCR | qDWV-1 F,R | Helicase | 2 |
| qDWV-1 P | 21 | |||
| qDWV-2 F,R,P | RdRP | 12 | ||
| BQCV | qPCR | qBQCV F,R | 7834–8119 bp | 15 |
| qBQCV P | 20 | |||
| PCR | BQCV1 F,R | 379–700 bp | 14 | |
| SBV | qPCR | qSBV F,R,P | 5’NTR | 20 |
| ABPV | PCR | ABPV-1 F,R | RdRP | 26 |
| ABPV -2 F,R | 34–240 bp | 14 |
Table 2.
Results of virus detection in bees, pollen, honey, hive debris and hive grid smears, using an end-point PCR (black queen cell virus (BQCV)) and a qPCR (deformed wing virus (DWV), black queen cell virus (BQCV) and sacbrood virus (SBV))
| DWV | BQCV | SBV | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sample | Bees | Pollen | Honey | Debris | Smears | Bees | Pollen | Honey | Debris | Smears | Bees | Pollen | Honey | Debris | Smears |
| A1 1 | + | + | + | + | - | + | + | + | + | + | + | + | + | + | − |
| A1 2 | + | + | + | + | + | + | + | + | + | − | + | + | + | + | − |
| A1 3 | + | + | + | + | − | + | + | + | + | − | + | + | + | + | − |
| A1 4 | + | − | + | + | + | + | + | + | + | + | + | + | + | + | − |
| A2 1 | + | + | − | − | − | + | − | + | − | + | + | − | + | + | + |
| A2 2 | + | − | − | − | − | + | + | + | − | − | + | + | + | + | − |
| A2 3 | + | + | − | + | − | + | + | + | + | − | + | + | + | + | + |
| A2 4 | + | − | − | − | − | + | + | + | − | + | + | + | + | + | + |
| A2 5 | + | + | − | + | − | + | + | + | + | + | + | + | + | + | + |
| A2 6 | + | − | + | + | − | + | − | + | + | + | + | + | + | + | + |
| A3 1 | + | + | + | + | − | + | + | + | + | + | + | + | + | + | + |
| A4 1 | + | + | + | − | − | + | + | + | − | − | + | + | + | − | − |
| A4 2 | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + |
| A4 3 | + | + | − | − | − | + | + | + | − | − | + | + | + | + | − |
| A4 4 | + | + | − | + | − | + | + | + | − | − | + | + | + | + | − |
| A4 5 | + | + | + | + | + | + | + | + | + | − | + | + | + | + | + |
| A4 6 | + | − | + | − | − | + | − | + | − | + | + | − | + | + | − |
| A4 7 | + | + | + | − | − | + | + | + | − | − | + | + | + | − | − |
| A4 8 | + | + | − | − | − | + | + | + | − | + | + | + | + | − | + |
| A4 9 | + | + | − | − | − | + | + | + | − | + | + | + | + | − | − |
| A4 10 | + | − | + | − | − | + | + | + | − | − | + | + | + | − | − |
| A4 11 | + | + | + | − | − | + | + | + | − | − | + | + | + | − | + |
| A4 12 | + | + | + | − | − | + | + | + | − | + | + | + | + | − | + |
| A4 13 | + | + | + | + | + | + | + | + | + | + | + | + | + | + | + |
| Positivity rate (%) | 100.0 | 75.0 | 62.5 | 50.0 | 20.8 | 100.0 | 87.5 | 100.0 | 45.8 | 54.2 | 100.0 | 91.7 | 100.0 | 70.8 | 50.0 |
Table 3.
Results of acute bee paralysis virus (ABPV) detection in bees, pollen, honey, hive debris and smears from the hive bottom board, using an end-point PCR
| ABPV | |||||
|---|---|---|---|---|---|
| Sample | Bees | Pollen | Honey | Debris | Smears |
| A1 1 | − | − | − | − | − |
| A1 2 | − | + | − | − | + |
| A1 3 | − | + | − | − | − |
| A1 4 | − | + | − | − | − |
| A2 1 | − | − | − | − | − |
| A2 2 | − | − | − | − | − |
| A2 3 | − | − | − | − | − |
| A2 4 | − | − | − | − | + |
| A2 5 | − | + | − | − | − |
| A2 6 | − | + | − | − | − |
| A3 1 | − | + | − | − | − |
| A4 1 | + | + | − | − | − |
| A4 2 | + | + | − | − | − |
| A4 3 | + | − | − | − | − |
| A4 4 | + | + | + | − | − |
| A4 5 | + | − | − | − | + |
| A4 6 | + | − | + | − | − |
| A4 7 | + | − | − | − | − |
| A4 8 | + | + | − | − | − |
| A4 9 | + | − | + | − | + |
| A4 10 | + | + | − | − | − |
| A4 11 | + | − | − | − | − |
| A4 12 | + | + | − | − | − |
| A4 13 | + | − | − | − | − |
| Positivity rate (%) | 54.2 | 50.0 | 12.5 | 0.0 | 12.5 |
Table 4.
Viral loads of deformed wing virus (DWV) in samples of bees, pollen, hive debris and hive grid smears
| DWV | ||||
|---|---|---|---|---|
| Sample | Bees | Pollen | Debris | Smears |
| A1 1 | 1.86 × 108 | 1.03 × 107 | 4.98 × 104 | − |
| A1 2 | 5.26 × 102 | 7.60 × 105 | 2.90 × 104 | 3.50 × 105 |
| A1 3 | 2.05 × 102 | 2.49 × 106 | 1.67 × 103 | − |
| A1 4 | 1.13 × 10 | − | 2.54 × 103 | 1.01 × 105 |
| A2 1 | 1.16 × 102 | 3.57 × 105 | − | − |
| A2 2 | 9.64 × 10 | − | − | − |
| A2 3 | 4.95 × 10 | − | 9.54 × 102 | − |
| A2 4 | 7.58 × 10 | − | 7.15 × 102 | − |
| A2 5 | 1.14 ×102 | 2.67 × 105 | 2.02 × 103 | − |
| A2 6 | 8.49 × 10 | − | − | − |
| A3 1 | 7.08 × 10 | 8.58 × 105 | 5.52 × 103 | − |
| A4 1 | − | 1.42 × 106 | − | − |
| A4 2 | 2.61 × 10 | − | 3.57 × 103 | − |
| A4 3 | 1.94 × 10 | − | − | − |
| A4 4 | − | − | 6.59 × 102 | − |
| A4 5 | 3.83 × 10 | − | 1.80 × 102 | − |
| A4 6 | − | − | − | − |
| A4 7 | − | 1.11 × 106 | − | − |
| A4 8 | 4.55 × 10 | 6.59 × 106 | − | − |
| A4 9 | 7.41 × 10 | − | − | − |
| A4 10 | 2.68 × 102 | − | − | − |
| A4 11 | 2.72 × 102 | − | − | − |
| A4 12 | 1.31 × 103 | − | − | − |
| A4 13 | 6.96 × 10 | − | − | − |
| Mean | 7.75 × 106 a | 1.01 × 106 ab | 4.03E × 103 ab | 1.89 × 104 bc |
| SD | 3.80 × 107 | 2.43 × 106 | 1.14 × 104 | 7.41 ×104 |
1 SD – standard deviation. Data represent numbers of virus copies/μL of analyte. Viral loads of some DWV-positive samples could not be calculated because of a lack of viral standards for the helicase-coding region targeted by one of the primer pairs used. – denotes a number of viral copies under the detection limit. Mean viral loads of materials with different lowercase letters are statistically significantly different (P < 0.05)
Table 5.
Viral loads of BQCV and SBV in samples of bees, pollen, honey, hive debris and hive grid smears
| BQCV | SBV | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Sample | Bees | Pollen | Honey | Debris | Smears | Bees | Pollen | Honey | Debris | Smears | |
| A1 1 | 4.23 × 107 | 1.58 × 107 | 2.83 × 106 | 7.21 × 105 | − | 1.76 × 104 | 5.86 × 106 | 1.01 × 106 | 8.39 × 106 | − | |
| A1 2 | 5.05 × 108 | 2.40 × 106 | 3.08 × 106 | 2.10 × 106 | − | 1.53 × 105 | 2.00 × 105 | 2.30 × 106 | 6.74 × 106 | − | |
| A1 3 | 5.24 × 107 | 3.28 × 106 | 3.22 × 106 | 1.43 × 105 | − | 1.64 × 105 | 2.06 × 106 | 3.81 × 106 | 3.98 × 106 | − | |
| A1 4 | 5.57 × 107 | 2.85 × 105 | 2.15 × 106 | 7.58 × 106 | 1.36 × 105 | 3.10 × 104 | 4.53 × 104 | 1.70 × 106 | 1.04 × 107 | − | |
| A2 1 | 5.66 × 106 | − | 1.03 × 106 | − | 7.87 × 105 | 3.95 × 104 | − | 4.96 × 105 | 4.26 × 108 | 2.27 × 104 | |
| A2 2 | 3.14 × 106 | 5.00 × 106 | 2.03 × 105 | − | − | 1.41 × 109 | 1.22 × 106 | 7.19 × 104 | 3.31 × 107 | − | |
| A2 3 | 7.56 × 106 | 5.42 × 106 | 3.78 × 105 | 5.94 × 106 | − | 9.00 × 108 | 4.41 × 106 | 2.09 × 105 | 1.08 × 109 | 1.19 × 108 | |
| A2 4 | 5.66 × 107 | 7.62 × 105 | 2.30 × 106 | − | 4.18 × 105 | 2.30 × 108 | 3.00 × 105 | 1.99 × 106 | 1.20 × 109 | 2.46 × 105 | |
| A2 5 | 2.10 × 107 | 8.70 × 106 | 2.23 × 106 | 1.27 × 106 | 7.98 × 105 | 8.48 × 109 | 1.57 × 107 | 1.79 × 106 | 2.94 × 109 | 4.41 × 106 | |
| A2 6 | 9.89 × 107 | − | 3.59 × 106 | 7.24 × 105 | 7.99 × 105 | 3.06 × 106 | 7.91 × 104 | 1.48 × 106 | 8.68 × 106 | 3.53 × 105 | |
| A3 1 | 1.40 × 107 | 2.81 × 106 | 4.17 × 106 | 7.70 × 106 | − | 4.73 × 105 | 1.08 × 106 | 2.33 × 106 | 5.06 × 107 | 2.14 × 104 | |
| A4 1 | 3.94 × 107 | 3.71 × 107 | 4.94 × 106 | − | − | 2.96 × 105 | 8.30 × 106 | 8.07 × 105 | − | − | |
| A4 2 | 1.90 × 108 | 2.37 × 107 | 1.75 × 106 | 2.63 × 106 | 2.28 × 105 | 4.20 × 108 | 4.20 × 106 | 1.71 × 105 | 8.60 × 107 | − | |
| A4 3 | 6.86 × 107 | 2.62 × 107 | 1.69 × 105 | − | − | 1.01 × 105 | 4.21 × 106 | 4.26 × 104 | 1.40 × 107 | − | |
| A4 4 | 4.74 × 107 | 5.59 × 106 | 3.40 × 105 | − | − | 2.09 × 105 | 1.33 × 106 | 6.47 × 104 | 1.64 × 107 | − | |
| A4 5 | 1.16 × 108 | 1.52 × 107 | 3.57 × 106 | 1.05 × 106 | − | 1.22 × 105 | 3.29 × 106 | 6.65 × 105 | 1.08 × 106 | 8.41 × 103 | |
| A4 6 | 4.93 × 107 | − | 4.86 × 106 | − | 6.87 × 104 | 2.91 × 105 | − | 1.69 × 106 | 5.34 × 106 | − | |
| A4 7 | 1.07 × 108 | 3.50 × 107 | 1.48 × 106 | − | − | 1.16 × 105 | 4.60 × 106 | 2.38 × 105 | − | − | |
| A4 8 | 1.48 × 108 | 8.35 × 107 | 1.10 × 106 | − | 5.03 × 105 | 1.12 × 105 | 4.61 × 106 | 1.07 × 105 | − | 1.05 × 105 | |
| A4 9 | 1.62 × 108 | 2.45 × 107 | 7.64 × 104 | − | 2.42 × 105 | 6.43 × 108 | 1.95 × 106 | 1.58 × 104 | − | − | |
| A4 10 | 9.39 × 107 | 2.40 × 107 | 1.90 × 106 | − | − | 3.51 × 105 | 2.93 × 106 | 7.64 × 105 | − | − | |
| A4 11 | 7.00 × 107 | 2.25 × 107 | 1.16 × 107 | − | − | 4.20 × 105 | 2.19 × 107 | 4.43 × 106 | − | 9.20 × 103 | |
| A4 12 | 2.82 × 108 | 3.74 × 107 | 3.55 × 105 | − | 1.60 × 105 | 4.10 × 105 | 1.10 × 107 | 5.64 × 104 | − | 4.56 × 104 | |
| A4 13 | 1.00 × 108 | 3.32 × 107 | 1.15 × 106 | 5.84 × 105 | 2.59 × 105 | 1.72 × 109 | 8.10 × 106 | 2.88 × 105 | 4.19 × 108 | 7.95 × 105 | |
| Mean | 9.73 × 107 a | 1.72 × 107 b | 2.44 × 106 bc | 1.27 × 106 cd | 1.83 × 105 d | 5.75 × 108 a | 4.47 × 106 a | 1.11 × 106 a | 2.63 × 108 a | 5.21 × 106 b | |
| SD | 1.09 × 108 | 1.93 × 107 | 2.46 × 106 | 2.37 × 106 | 2.75 × 105 | 1.75 × 109 | 5.38 × 106 | 1.22 × 106 | 6.58 × 108 | 2.43 × 107 | |