Have a personal or library account? Click to login
Characterisation of ORF3, M, N and E gene sequences of porcine epidemic diarrhoea virus from domestic pigs in Poland Cover

Characterisation of ORF3, M, N and E gene sequences of porcine epidemic diarrhoea virus from domestic pigs in Poland

Journal of Veterinary Research
Volume 66 (2022): Issue 3 (September 2022)
By: Monika Olech,  Marta Antas and  Anna Szczotka-Bochniarz  
Open Access
|Sep 2022

Figures & Tables

Fig. 1

Phylogenetic relationship between the sequences of PEDV Polish strains and sequences of reference strains obtained from GenBank. The phylogenetic trees were constructed on the basis of the ORF3 (a) and E (b) nucleotide sequences with MEGA6 software using the neighbour-joining method. Bootstrap values >70 are shown. The numbers of each branch represent the bootstrap value calculated using 1,000 replicates. The scale bars indicate nucleotide substitutions per site. PEDV isolates identified in this study are indicated with solid black circles
Phylogenetic relationship between the sequences of PEDV Polish strains and sequences of reference strains obtained from GenBank. The phylogenetic trees were constructed on the basis of the ORF3 (a) and E (b) nucleotide sequences with MEGA6 software using the neighbour-joining method. Bootstrap values >70 are shown. The numbers of each branch represent the bootstrap value calculated using 1,000 replicates. The scale bars indicate nucleotide substitutions per site. PEDV isolates identified in this study are indicated with solid black circles

Fig. 2

Phylogenetic relationship between the sequences of PEDV Polish strains and sequences of reference strains obtained from GenBank. The phylogenetic trees were constructed on the basis of the M (a) and N (b) nucleotide sequences with the MEGA6 software using the neighbour-joining method. Bootstrap values >70 are shown. The numbers of each branch represent the bootstrap value calculated using 1,000 replicates. The scale bars indicate nucleotide substitutions per site. PEDV isolates identified in this study are indicated with solid black circles
Phylogenetic relationship between the sequences of PEDV Polish strains and sequences of reference strains obtained from GenBank. The phylogenetic trees were constructed on the basis of the M (a) and N (b) nucleotide sequences with the MEGA6 software using the neighbour-joining method. Bootstrap values >70 are shown. The numbers of each branch represent the bootstrap value calculated using 1,000 replicates. The scale bars indicate nucleotide substitutions per site. PEDV isolates identified in this study are indicated with solid black circles
DOI: https://doi.org/10.2478/jvetres-2022-0051 | Journal eISSN: 2450-8608
Journal RSS Feed
Language: English
Page range: 317 - 324
Submitted on: Apr 24, 2022
Accepted on: Sep 12, 2022
Published on: Sep 30, 2022
Published by: National Veterinary Research Institute in Pulawy
In partnership with: Paradigm Publishing Services
Publication frequency: 4 issues per year
Keywords:
porcine epidemic diarrhoea virus,
E gene,
M gene,
N gene,
ORF3,
phylogenetic analysis
Related subjects:
Life sciences,
Molecular biology,
Microbiology and virology,
Life sciences, other,
Medicine,
Veterinary medicine

© 2022 Monika Olech, Marta Antas, Anna Szczotka-Bochniarz, published by National Veterinary Research Institute in Pulawy
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

Previous articleVolume 66 (2022): Issue 3 (September 2022)Next article