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Detection of a new emerging strain of rabbit haemorrhagic disease virus 2 (GI.2) in China Cover

Detection of a new emerging strain of rabbit haemorrhagic disease virus 2 (GI.2) in China

Open Access
|Sep 2022

References

  1. Abrantes J., van der Loo W., Le Pendu J., Esteves P.J.: Rabbit haemorrhagic disease (RHD) and rabbit haemorrhagic disease virus (RHDV): a review. Vet Res 2012, 43, 12, doi: 10.1186/12979716-43-12.
  2. Bankevich A., Nurk S., Antipov D., Gurevich A.A., Dvorkin M., Kulikov A.S., Lesin V.M., Nikolenko S.I., Pham S., Prjibelski A.D., Pyshkin A.V., Sirotkin A.V., Vyahhi N., Tesler G., Alekseyev M.A., Pevzner P.A.: SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing. J Comput Biol 2012, 19, 455–477, doi: 10.1089/cmb.2012.0021.
  3. Camarda A., Pugliese N., Cavadini P., Circella E., Capucci L., Caroli A., Legretto M., Mallia E., Lavazza A.: Detection of the new emerging rabbit haemorrhagic disease type 2 virus (RHDV2) in Sicily from rabbit (Oryctolagus cuniculus) and Italian hare (Lepus corsicanus). Res Vet Sci 2014, 97, 642–645, doi: 10.1016/j.rvsc.2014.10.008.
  4. Capucci L., Cavadini P., Schiavitto M., Lombardi G., Lavazza A.: Increased pathogenicity in rabbit haemorrhagic disease virus type 2 (RHDV2). Vet Rec 2017, 180, 426, doi: 10.1136/vr.104132.
  5. Coil D., Jospin G., Darling A.E.: A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data. Bioinformatics 2015, 15, 587–589, doi: 10.1093/bioinformatics/ btu661.
  6. Dalton K.P., Nicieza I., Abrantes J., Esteves P.J., Parra F.: Spread of new variant RHDV in domestic rabbits on the Iberian Peninsula. Vet Microbiol 2014, 21, 169, 67–73, doi: 10.1016/j.vetmic.2013.12.015.
  7. Dalton K.P., Nicieza I., Balseiro A., Muguerza M.A., Rosell J.M., Casais R., Álvarez Á.L., Parra F.: Variant rabbit hemorrhagic disease virus in young rabbits, Spain. Emerg Infect Dis 2012, 18, 2009–2012, doi: 10.3201/eid1812.120341.
  8. Hu B., Wei H., Fan Z., Song Y., Chen M., Qiu R., Zhu W., Xu W., Xue J., Wang F.: Emergence of rabbit haemorrhagic disease virus 2 in China in 2020. Vet Med Sci 2021, 7, 236–239, doi: 10.1002/vms3.332.
  9. König M., Thiel H.-J., Meyers G.: Detection of viral proteins after infection of cultured hepatocytes with rabbit hemorrhagic disease virus. J Virol 1998, 72, 4492–4497, doi: 10.1128/JVI.72.5.4492-4497.1998.
  10. Kumar S., Stecher G., Li M., Knyaz C., Tamura K.: MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms. Mol Biol Evol 2018, 35, 1547–1549, doi: 10.1093/molbev/msy096.
  11. Kurtz S., Phillippy A., Delcher A.L., Smoot M., Shumway M., Antonescu C., Salzberg S.L.: Versatile and open software for comparing large genomes. Genome Biol 2004, 5, R12, doi: 10.1186/gb-2004-5-2-r12.
  12. Le Gall-Reculé G., Lavazza A., Marchandeau S., Bertagnoli S., Zwingelstein F., Cavadini P., Martinelli N., Lombardi G., Guérin J.-L., Lemaitre E., Decors A., Boucher S., Le Normand B., Capucci L.: Emergence of a new lagovirus related to Rabbit Haemorrhagic Disease Virus. Vet Res 2013, 8, 44, 81, doi: 10.1186/1297-9716-44-81.
  13. Le Pendu J., Abrantes J., Bertagnoli S., Guitton J-S., Le Gall-Reculé G., Lopes A.M., Marchandeau S., Alda F., Almeida T., Célio A.P., Bárcena J., Burmakina G., Blanco E., Calvete C., Cavadini P., Cooke B., Dalton K., Delibes Mateos M., Deptuła W., Eden J.S., Wang F., Ferreira C.C., Ferreira P., Foronda P., Gonçalves D., Gavier-Widén D., Hall R., Hukowska-Szematowicz B., Kerr P., Kovaliski J., Lavazza A., Mahar J., Malogolovkin A., Marques R.M., Marques S., Martin-Alonso A., Monterroso P., Moreno S., Mutze G., Neimanis A., Niedźwiedzka-Rystwej P., Peacock D., Parra F., Rocchi M., Rouco C., Ruvoën-Clouet N., Silva E., Silvério D., Strive T., Thompson G., Tokarz-Deptuła B., Esteves P.: Proposal for a unified classification system and nomenclature of lagoviruses. J Gen Virol 2017, 98, 1658–1666, doi: 10.1099/jgv.0.000840.
  14. Liu S.J., Xue H.P., Pu B.Q., Qian N.H., Xu W.Y., Du N.X.: A New Viral Disease in Rabbits (in Chinese). Animal Husb Vet Med 1984, 16, 253–255.
  15. Lopes A.M., Correia J., Abrantes J., Melo P., Ramada M., Magalhães M.J., Alves P.C., Esteves P.J.: Is the new variant RHDV replacing genogroup 1 in Portuguese wild rabbit populations? Viruses 2015, 7, 27–36, doi: 10.3390/v7010027.
  16. Lopes A.M., Dalton K.P., Magalhães M.J., Parra F., Esteves P.J., Holmes E.C., Abrantes J.: Full genomic analysis of new variant rabbit hemorrhagic disease virus revealed multiple recombination events. J Gen Virol 2015, 96, 1309–1319, doi: 10.1099/vir.0.000070.
  17. Martin D.P., Varsani A., Roumagnac P., Botha G., Maslamoney S., Schwab T., Kelz Z., Kumar V., Murrell B.: RDP5: a computer program for analyzing recombination in, and removing signals of recombination from, nucleotide sequence datasets. Virus Evol 2021, 7 veaa087, doi: 10.1093/ve/veaa087.
  18. McIntosh M.T., Behan S.C., Mohamed F.M., Lu Z., Moran K.E., Burrage T.G., Neilan J.G., Ward G.B., Botti G., Capucci L., Metwally S.A.: A pandemic strain of calicivirus threatens rabbit industries in the Americas. Virol J 2007, 4, 96, doi: 10.1186/1743-422X-4-96.
  19. Neimanis A., Larsson Pettersson U., Huang N., Gavier-Widén D., Strive T.: Elucidation of the pathology and tissue distribution of Lagovirus europaeus GI.2/RHDV2 (rabbit haemorrhagic disease virus 2) in young and adult rabbits (Oryctolagus cuniculus). Vet Res 2018, 49, 46, doi: 10.1186/s13567-018-0540-z.
  20. Nyström K., Le Gall-Reculé G., Grassi P., Abrantes J., Ruvoën-Clouet N., Le Moullac-Vaidye B., Lopes A.M., Esteves P.J., Strive T., Marchandeau S., Dell A., Haslam S.M., Le Pendu J.: Histo-blood group antigens act as attachment factors of rabbit hemorrhagic disease virus infection in a virus strain-dependent manner. PLoS Pathog 2011, 7, e1002188, doi: 10.1371/journal.ppat.1002188.
  21. Parra F., Prieto M.: Purification and characterization of a calicivirus as the causative agent of a lethal hemorrhagic disease in rabbits. J Virol 1990, 64, 4013–4015, doi: 10.1128/JVI.64.8.4013-4015.1990.
  22. Silvério D., Lopes A.M., Melo-Ferreira J., Magalhães M.J., Monterroso P., Serronha A., Maio E., Alves P.C., Esteves P.J., Abrantes J.: Insights into the evolution of the new variant rabbit haemorrhagic disease virus (GI.2) and the identification of novel recombinant strains. Transbound Emerg Dis 2018, 65, 983–992, doi: 10.1111/tbed.12830.
  23. Vinjé J., Estes M.K., Esteves P., Green K.Y., Katayama K., Knowles N.J., L’Homme Y., Martella V., Vennema H., White P.A., ICTV Report Consortium.: ICTV Virus Taxonomy Profile: Caliciviridae. J Gen Virol 2019, 100, 1469–1470, doi: 10.1099/jgv.0.001332.
  24. Walker B.J., Abeel T., Shea T., Priest M., Abouelliel A., Sakthikumar S., Cuomo C.A., Zeng Q., Wortman J., Young S.K., Earl A.M.: Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement. PLoS One 2014, 9, e112963, doi: 10.1371/journal.pone.0112963.
  25. Yang Z.-X., Li L.-R., Wang Y., Yao X.-P., Han X.-Q., Yang Z.-Q., Zhou B., Wang K.Y., Zhang Y.-M.: Development of a RT-PCR for the detection of European brown hare syndrome virus. Adv Mater Res 2011, 271–273, 410–416, doi: 10.4028/www.scientific.net/amr.271-273.410.
Language: English
Page range: 289 - 295
Submitted on: Mar 10, 2022
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Accepted on: Aug 30, 2022
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Published on: Sep 14, 2022
In partnership with: Paradigm Publishing Services
Publication frequency: 4 issues per year

© 2022 Wanting Chen, Teng Tu, Yan Luo, Zexiao Yang, Xueping Yao, Xulong Wu, Yin Wang, published by National Veterinary Research Institute in Pulawy
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.