Fig. 1

Fig. 2

Fig. 3

Fig. 4

Biochemical properties and growth condition of S_ putrefaciens group isolates (n = 44) and reference strains
| S. putrefaciens isolates | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Biochemical properties | S. xiamenensis | S. oneidensis | S. putrefaciens | Shewanella sp. | ATCC BAA-1097 | ATCC 8071 | ATCC 8073 | ATCC 700550 | JCM 16212T |
| Ornithine decarboxylase | 6 | 1 | 14 | 5 | - | - | − | + | + |
| Citrate utilisation | 2 | 0 | 4 | 2 | +w | +w | − | + | + |
| Acid from arabinose | 9 | 0 | 3 | 1 | + | + | + | − | + |
| Aesculin hydrolysis | 9 | 4 | 23 | 6 | +w | +w | + | + | + |
| Assimilation: | |||||||||
| Glucose | 8 | 2 | 12 | 0 | ̶ | − | + | − | + |
| Arabinose | 9 | 0 | 8 | 1 | − | + | + | − | + |
| Potassium gluconate | 0 | 0 | 18 | 1 | − | − | − | − | − |
| Capric acid | 7 | 1 | 16 | 0 | + | + | − | − | + |
| Malic acid | 9 | 4 | 25 | 5 | + | + | − | − | + |
| Growth condition NaCl range (%) | |||||||||
| 0.0–2.0 | 9 | 4 | 25 | 6 | + | + | + | + | + |
| 3.0 | 9 | 3 | 25 | 5 | + | + | + | + | + |
| 4.0 | 5 | 0 | 25 | 1 | + | + | +w | + | + |
| 5.0 | 3 | 0 | 24 | 1 | +w | − | +w | +w | +w |
| 6.0 | 0 | 0 | 0 | 0 | − | − | − | − | − |
Matrix showing homologous titres for serological variant definition (upper part) and Shewanella distribution in defined variants (lower part)
| Antisera* | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Titre | S-K604 | S-K575 | S-St5 | S-St16 | S-K530 | S-ATCC BAA 1097 | S-K696 | S-KK3 | S-Am6 | S-TIII | S-ATCC 8071 | S-Sh1 | S-K678 | S-St8 | |
| antigens | A-K604 | 2,560 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| A-K575 | 40 | 2,560 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
| A-St5 | 0 | 0 | 2,560 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
| A-St16 | 0 | 0 | 0 | 2,560 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
| A-K530 | 0 | 0 | 0 | 0 | 2,560 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
| A- ATCC BAA 1097 | 0 | 0 | 0 | 0 | 0 | 2,560 | 0 | 0 | 0 | 0 | 0 | 160 | 0 | 0 | |
| A-K696 | 0 | 0 | 0 | 0 | 0 | 0 | 1,280 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | |
| A-KK3 | 0 | 0 | 0 | 0 | 0 | 160 | 0 | 1,280 | 0 | 0 | 0 | 0 | 0 | 0 | |
| A-Am6 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1,280 | 0 | 0 | 0 | 0 | 0 | |
| A-TIII | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1,280 | 0 | 0 | 0 | 0 | |
| A-ATCC 8071 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1,280 | 0 | 0 | 0 | |
| A-Sh1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 640 | 0 | 0 | |
| A-K678 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 320 | 0 | |
| A-St8 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 160 | |
| Variant | I | II | III | IV | V | VI | VII | VIII | IX | X | XI | XII | XIII | XIV | |
| isolates | ID | K604 | K575 | St5 | St16 | K530 | ATCC | K696 | KK3 | Am6 | TIII | ATCC | Sh1 | K678 | St8 |
| n** | 3 | 5 | 3 | 1 | 1 | 1 | 4 | 4 | 2 | 4 | 1 | 3 | 1 | 1 | |
| % | 6% | 11% | 6% | 2% | 2% | 2% | 9% | 9% | 4% | 9% | 2% | 6% | 2% | 2% |
Distribution of inhibition zone diameter values of different antimicrobial agents for the Shewanella isolates (n = 44)
| Inhibition zone diameter (mm) | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Antimicrobial (concentration) | Bacteria species | 7 | 11 | 14 | 30 | |||||||||||||||||
| 6 | - | - | - | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | - | >35 | Criteria* | %NWT | ||
| Shewanella | 10 | 13 | 16 | 35 | ||||||||||||||||||
| sulphonamides (300μg) | putrefaciens | 24 | 1 | n.a. | n.d. | |||||||||||||||||
| xiamenensis | 9 | n.d. | ||||||||||||||||||||
| oneidensis | 4 | n.d. | ||||||||||||||||||||
| sp.** | 6 | n.d. | ||||||||||||||||||||
| sulphamethoxazole/ trimethoprim (23.75/1.25μg) | putrefaciens | 1 | 2 | 3 | 1 | 5 | 3 | 2 | 4 | 4 | NWT≤19 mm | 4 | ||||||||||
| xiamenensis | 3 | 1 | 2 | 1 | 1 | 1 | 33 | |||||||||||||||
| oneidensis | 1 | 1 | 1 | 1 | 0 | |||||||||||||||||
| sp.** | 1 | 1 | 1 | 1 | 2 | 0 | ||||||||||||||||
| oxolic acid (2μg) | putrefaciens | 2 | 3 | 5 | 1 | 1 | 7 | 3 | 1 | 2 | NWT ≤29 mm | 100 | ||||||||||
| xiamenensis | 6 | 1 | 1 | 1 | 100 | |||||||||||||||||
| oneidensis | 1 | 1 | 1 | 1 | 75 | |||||||||||||||||
| sp.** | 1 | 1 | 4 | 33 | ||||||||||||||||||
| flumequine (30μg) | putrefaciens | 1 | 1 | 1 | 5 | 16 | 1 | n.a. | n.d. | |||||||||||||
| xiamenensis | 5 | 1 | 1 | 1 | 1 | n.d. | ||||||||||||||||
| oneidensis | 1 | 3 | n.d. | |||||||||||||||||||
| sp.** | 1 | 4 | 1 | n.d. | ||||||||||||||||||
| enrofloxacin (5μg) | putrefaciens | 1 | 1 | 2 | 1 | 1 | 1 | 2 | 3 | 12 | 1 | n.a. | n.d. | |||||||||
| xiamenensis | 3 | 2 | 1 | 3 | n.d. | |||||||||||||||||
| oneidensis | 1 | 3 | n.d. | |||||||||||||||||||
| sp.** | 1 | 5 | n.d. | |||||||||||||||||||
| norfloxacine (10μg) | putrefaciens | 2 | 3 | 3 | 1 | 3 | 2 | 1 | 3 | 7 | n.a. | n.d. | ||||||||||
| xiamenensis | 4 | 1 | 1 | 1 | 2 | n.d. | ||||||||||||||||
| oneidensis | 1 | 1 | 1 | 1 | n.d. | |||||||||||||||||
| sp.** | 1 | 1 | 4 | n.d. | ||||||||||||||||||
| oxytetracycline (30μg) | putrefaciens | 1 | 1 | 4 | 1 | 7 | 4 | 4 | 1 | 2 | NWT ≤27 mm | 100 | ||||||||||
| xiamenensis | 6 | 2 | 1 | 100 | ||||||||||||||||||
| oneidensis | 2 | 1 | 1 | 100 | ||||||||||||||||||
| sp.** | 1 | 1 | 2 | 1 | 1 | 100 | ||||||||||||||||
| doxycycline (30μg) | putrefaciens | 2 | 2 | 6 | 3 | 2 | 2 | 1 | 1 | 5 | 1 | n.a. | n.d. | |||||||||
| xiamenensis | 2 | 1 | 5 | 1 | n.d. | |||||||||||||||||
| oneidensis | 1 | 1 | 1 | 1 | n.d. | |||||||||||||||||
| sp.** | 1 | 1 | 1 | 1 | 1 | 1 | n.d. | |||||||||||||||
| florphenicol (30μg) | putrefaciens | 5 | 16 | 4 | NWT ≤26 mm | 0 | ||||||||||||||||
| xiamenensis | 8 | 1 | 0 | |||||||||||||||||||
| oneidensis | 4 | 0 | ||||||||||||||||||||
| sp.** | 2 | 1 | 3 | 0 | ||||||||||||||||||
S_ putrefaciens group isolates collected from freshwater fish
| Molecular identification | Symbol of isolate | APINE profile | Fish species | Symptoms of diseases/mortality |
|---|---|---|---|---|
| S. xiamenensis | K736 | 1451354 | Common carp | Yes/Yes |
| S. xiamenensis | K733 | Common carp | No/Yes | |
| S. xiamenensis | KK3 | Koi carp | Yes/Yes | |
| S. xiamenensis | KOI2 | Koi carp | Yes/Yes | |
| S. xiamenensis | W24 | European eel | Yes/Yes | |
| S. xiamenensis | W28 | European eel | Yes/Yes | |
| Shewanella sp. | Jes15 | Siberian sturgeon | No/No | |
| S. xiamenensis | St16 | Slender krib | Yes/Yes | |
| S. xiamenensis | St8 | Slender krib | Yes/Yes | |
| Shewanella sp. | Am6 | Grass carp | No/No | |
| S. putrefaciens | K677 | 1410344 | Common carp | No/No |
| S. putrefaciens | K678 | Common carp | No/No | |
| Shewanella sp. | K769 | Common carp | Yes/No | |
| S. oneidensis | Pt400 | Rainbow trout | nd/Yes | |
| S. putrefaciens | Pt411 | Rainbow trout | Yes/Yes | |
| S. putrefaciens | K313 | 1450754 | Common carp | Yes/Yes |
| S. putrefaciens | K530 | Common carp | Yes/Yes | |
| S. putrefaciens | K604 | Common carp | Yes/Yes | |
| S. putrefaciens | K679 | Common carp | No/No | |
| S. putrefaciens | K680 | Common carp | No/No | |
| Shewanella sp. | K575 | 1450744 | Common carp | Yes/Yes |
| S. putrefaciens | GIII41(3) | Brown trout | Yes/Yes | |
| S. putrefaciens | St4 | Rainbow trout | Yes/Yes | |
| S. putrefaciens | Tp5 | 1410354 | Silver carp | Yes/Yes |
| S. oneidensis | Plo1 | Common roach | No/No | |
| S. oneidensis | Jes34 | Siberian sturgeon | No/No | |
| S. putrefaciens | Tsk20 | 1410754 | Brown trout | Yes/Yes |
| S. putrefaciens | St5 | European whitefish | Yes/Yes | |
| S. putrefaciens | E6 | Rainbow trout | No/No | |
| S. putrefaciens | Sh1 | 1411754 | Common carp | Yes/Yes |
| S. putrefaciens | Sh2 | Common carp | Yes/Yes | |
| Shewanella sp. | Jes1 | 1451754 | Siberian sturgeon | No/No |
| S. putrefaciens | Sh4 | Common carp | Yes/Yes | |
| S. putrefaciens | Jaz4 | Ide | No/No | |
| S. putrefaciens | TIII | 1411744 | Brown trout | Yes/Yes |
| S. putrefaciens | K869 | Common carp | Yes/Yes | |
| S. oneidensis | K696 | 1450344 | Common carp | Yes/Yes |
| S. putrefaciens | E9 | 1010344 | Rainbow trout | No/No |
| S. putrefaciens | E3 | 1011754 | Rainbow trout | No/No |
| S. xiamenensis | 16/c/29 | 1051344 | Zebrafish | Yes/Yes |
| S. putrefaciens | W9 | 1400354 | European eel | Yes/Yes |
| Shewanella sp. | St15 | 1411344 | Slender krib | Yes/Yes |
| S. putrefaciens | K751 | 1450354 | Common carp | No/No |
| S. putrefaciens | GIII46(3) | 1451344 | Brown trout | Yes/Yes |
