Have a personal or library account? Click to login
Assessment of Genetic Diversity in Cultivated Tomato (Solanum Lycopersicum L.) Genotypes Using Rapd Primers Cover

Assessment of Genetic Diversity in Cultivated Tomato (Solanum Lycopersicum L.) Genotypes Using Rapd Primers

Open Access
|Jul 2013

References

  1. Alvarez A.E., Van de Weil C.C.M., Smulders M.J.M., Vosman B. 2001. Use of microsatellites to evaluate genetic diversity and species relationships in the genus Lycopersicon. Theor. Appl. Genet. 103: 1283-1292. DOI: 10.1007/s00122010066210.1007/s001220100662
  2. Badjakov I., Todorovska E., Condakova V., Boicheva R., Athnassov A. 2006. Assessment the genetic diversity of Bulgarian raspberry germplasm collection by microsatellite and RAPD markers. J. Fruit Ornam. Plant Res. 14: 61-76.
  3. Bernacchi D., Tanksley S.D. 1997. An interspecific backcross of Lycopersicon esculentum × L. hirsutum: linkage analysis and a QTL study of sexual compatibility factors and floral traits. Genetics 147(2): 861-877. PMC120820510.1093/genetics/147.2.86112082059335620
  4. Bernatzky R., Tanksley S.D. 1986. Toward a saturated linkage map in tomato based on isozymes and random cDNA sequences. Genetics 112(4): 887-898. PMC120278310.1093/genetics/112.4.887120278317246322
  5. Breto M.P., Asins M.J., Carbonell E.A. 1993. Genetic variability in Lycopersicon species and their genetic relationships. Theor. Appl. Genet. 86: 113-120. DOI: 10.1007/BF0022381510.1007/BF0022381524193390
  6. Broun P., Tanksley S.D. 1996. Characterization and genetic mapping of simple repeat sequences in the tomato genome. Mol. Gen. Genet. 250: 39-49. DOI: 10.1007/BF0219182310.1007/BF021918238569686
  7. Butiuc-Keul A.L., Crăciunas C., Coste A., Fagaro M. 2010. Discrimination and genetic polymorphism in several cultivar of grapevine by RAPD markers. Rom. Biotechn. Lett. 15(1): 111.
  8. Carmen de Vicente M., Felix Alberto G., Engels J., Ramanatha V.R. 2006. Genetic characterization and its use in decision-making for the conservation of crop germplasm. In: Ruane J., Sonnino A. (eds), The Role of Biotechnology in Exploring and Protecting Agricultural Genetic Resources. Food and Agriculture Organization of the United Nations, Rome, Italy, pp. 128-138.
  9. Celka Z., Buczkowska K., Bączkiewicz A., Drapikowska M. 2010. Genetic differentiation among geographically close populations of Malva alcea. Acta. Biol. Cracov. Bot. 52(2): 32-41. DOI: 10.2478/v10182-010-0021-910.2478/v10182-010-0021-9
  10. Chen F.Q., Foolad M.R. 1999. A molecular linkage map of tomato based on a cross between Lycopersiconesculentum and L. pimpinellifolium and its comparison with other molecular maps of tomato. Genome 42(1): 94-103. DOI: 10.1139/g98-10310.1139/g98-103
  11. Ezekiel C.N., Nwangburuka C.C., Ajibade O.A., Odebode A.C. 2011. Genetic diversity in 14 tomato (Lycopersicon esculentum Mill.) varieties in Nigerian markets by RAPD-PCR technique. Afr. J. Biotechnol. 10(25): 4961-4967. DOI: 10.5897/AJB11.144
  12. Ferreira E.M. 2006. Molecular analysis of gene banks for sustainable conservation and increased use of crop genetic resources. In: Ruane J., Sonnino A. (eds), The role of biotechnology in exploring and protecting agricultural genetic resources. Food and Agriculture Organization of the United Nations, Rome, Italy, pp. 121-128.
  13. Foolad R.M. 2007. Genome mapping and molecular breeding of tomato. Int. J. Plant Genomics. Volume 2007: Article ID 64358, p. 52. DOI: 10.1155/2007/6435810.1155/2007/64358226725318364989
  14. Frary A., Fulton T.M., Zamir D., Tanksley S.D. 2004. Advanced backcross QTL analysis of a Lycopersiconesculentum × L. pennellii cross and identification of possible orthologs in the Solanaceae. Theor. Appl. Genet. 108(3): 485-496. DOI: 10.1007/s00122-003-1422-x10.1007/s00122-003-1422-x14740082
  15. Frary A., Xu Y., Liu J., Mitchell S., Tedeschi E., Tanksley S. 2005. Development of a set of PCRbased anchor markers encompassing the tomato genome and evaluation of their usefulness for genetics and breeding experiments. Theor. Appl. Genet. 111: 291-312. DOI: 10.1007/s00122-005-2023-710.1007/s00122-005-2023-715926074
  16. Gashaw A., Mohammed H., Singh H. 2007. Genetic divergence in selected durum wheat genotypes of Ethiopian plasm. Afr. Crop. Sci. J. 15(2): 67-72. DOI: 10.4314/acsj.v15i2.5441910.4314/acsj.v15i2.54419
  17. Grandillo S., Tanksley S.D. 1996. Genetic analysis of RFLPs, GATA microsatellites and RAPDs in a cross between L. esculentum and L. pimpinellifolium. Theor. Appl. Genet. 92(8): 957-965. DOI: 10.1007/BF0022403510.1007/BF0022403524166622
  18. Kawar P.G., Devarumath R.M., Nerkar Y. 2009. Use of RAPD markers for assessment of genetic diversity in sugarcane cultivars. Indian J. Biotechnol. 8: 67-71.
  19. Keneni G., Jarso M., Wolabu T., Dino G. 2005. Extent and pattern of genetic diversity for morphoagronomic traits in Ethiopian highland pulse landraces: I. Field pea (Pisum sativum L.). Genetic Resour. Crop. Ev. 52(5): 539-549. DOI: 10.1007/s10722-003-6016-610.1007/s10722-003-6016-6
  20. Klein-Lankhorst R.M., Vermunt A., Weide R., Liharska T., Zabel P. 1991. Isolation of molecular markers for tomato (L. esculentum) using random amplified polymorphic DNA (RAPD). Theor. Appl. Genet. 83(1): 108-114. DOI: 10.1007/BF0022923210.1007/BF0022923224202263
  21. Miller J.C., Tanksley S.D. 1990. RFLP analysis of phylogenetic relationships and genetic variation in the genus Lycopersicon. Theor. Appl. Genet. 80: 437-448. DOI: 10.1007/BF0022674310.1007/BF0022674324221000
  22. Mondini L., Noorani A., Pagnotta A. Mario. 2009. Assessing plant genetic diversity by molecular tools. Diversity 1: 19-35. DOI: 10.3390/d101001910.3390/d1010019
  23. Nei M. 1973. Analysis of gene diversity in subdivided population. Proceed. Natl. Acad. Sci. USA. 70: 3321-3323. DOI: 10.1073/pnas.70.12.332110.1073/pnas.70.12.33214272284519626
  24. Noli E., Cont S., Maccaferri M., Sanguineti M.C. 1999. Molecular characterization of tomato cultivars. Seed Sci. Technol. 27(1): 1-10.
  25. Park Y.H., West M.A.L., St. Clair D.A. 2004. Evaluation of AFLPs for germplasm fingerprinting and assessment of genetic diversity in cultivars of tomato (Lycopersicon esculentum L.). Genome 47: 510-518.10.1139/g04-00415190368
  26. Parmar P., Oza P. Vishal., Chauhan V., Patel A.D., Kathiria K.B., Subramanian R.B. 2010. Genetic diversity and DNA fingerprint study of tomato discerned by SSR markers. Int. J. Biotechnol. Biochem. 6: 657-666.
  27. Rajput S.G., Wable K.J., Sharma K.M., Kubde P.D., Mulay S.A. 2006. Reproducibility testing of RAPD and SSR markers in tomato. Afr. J. Biotechnol. 5(2): 108-112.
  28. Rana M.K., Vafai Tabar M., Bhat K.V. 2005. Genetic diversity in Indian cotton (Gossypium spp.) cultivars as revealed by RAPD analysis. Indian J. Biotechnol. 4: 522-527.
  29. Rick C.M. 1975. The tomato. In: King R.C. (ed.), Handbook of Genetics. New York, NY, USA. Plenum Press, Vol. 2: 247-280. DOI: 10.1007/978-1-4684-2994-711
  30. Roubos K., Moustakas M., Aravanopoulos F.A. 2010. Molecular identification of Greek olive (Olea europaea) cultivars based on microsatellite loci. Genet. Mol. Res. 9(3): 1865-1876. DOI: 10.4238/vol9-3gmr91610.4238/vol9-3gmr91620882482
  31. Saliba-Colombani V., Causse M., Gervais L., Philouze J. 2000. Efficiency of RFLP, RAPD, and AFLP markers for the construction of an intraspecific map of the tomato genome. Genome 43: 29-40. DOI: 10.1139/g99-09610.1139/g99-096
  32. Semagn K., Bjørnstad A., Ndjiondjop Mn. 2006. An overview of molecular marker methods for plants. Afr. J. Biotechnol. 5(25): 2540-2568.
  33. Sharifova S.S. 2012. Biodiversity of vegetable genetic resources in Azerbaijan. Proc. Intern. Scientific Conference “130 Years Agricultural Science in Sadovo”, Institute of Plant Genetic Resources, Sadovo, Bulgaria, 5-6 June 2012, pp: 12-15.
  34. Singh N., Singh M., Kumar S., Kumar R., Singh V., Prasanna H.C., Rai M. 2007. RAPD markers for hybrid seed purity testing in tomato (Solanum lycopersicum L.). Cur. Sci. 93(4): 462-463.
  35. SPSS, SPSS Base 12.0 for Windows User`s Guide, SPSS Inc., Chicago, IL., 2003.
  36. Suliman-Pollatschek S., Kashkush K., Shats H., Hillel J., Lavi U. 2002. Generation and mapping of AFLP, SSRs and SNPs in Lycopersicon esculentum. Cel. Mol. Biol. Lett. 7: 583-597. DOI: 10.1007/BF0027970810.1007/BF0027970824301284
  37. Tanksley S.D., Ganal M.W., Prince J.P., De-Vicente M.C., Bonierbale M.W., Broun P., Fulton T.M., Giovannoni J.J., Grandillo S., Martin G.B et al. 1992. High density molecular linkage maps of the tomato and potato genomes. Genetics 132(4): 1141-1160.10.1093/genetics/132.4.114112052351360934
  38. Tanksley S.D., Rick C.M. 1980. Isozymic gene linkage map of the tomato: applications in genetics and breeding. Theor. Appl. Genet. 58(2): 161-170.
  39. Tardin F.D., Amaral Júnior A.T., Pereira M.G., Vidigal M.C.G., Daher R.F., Scapim C.A. 2003. Genetic diversity and determination of the optimum number of RAPD markers in lettuce (Lactuca sativa L.). Acta Sci-Agron. 25(1): 1-5.
  40. Teixeira-Cabral T.A., Sakiyama N.S., Zambolim L., Pereira A.A., Barros E.G., Sakiyama C.C.H. 2002. Reproducibility of the RAPD marker and its efficiency in coffee tree genotype grouping analysis. Crop Breed. Appl. Biotechnol. 2(1): 121-129.
  41. Zvingila D., Verbylaitë R., Baliuckas V., Pliura A., Kuusiene S. 2005. Genetic diversity (RAPD) in natural Lithuanian populations of common ash (Fraxinus excelsior L.). Biologija 3: 46-53.
DOI: https://doi.org/10.2478/johr-2013-0012 | Journal eISSN: 2353-3978 | Journal ISSN: 2300-5009
Language: English
Page range: 83 - 89
Published on: Jul 30, 2013
Published by: National Institute of Horticultural Research
In partnership with: Paradigm Publishing Services
Publication frequency: 2 issues per year

© 2013 Saida Sharifova, Sabina Mehdiyeva, Konstantinos Theodorikas, Konstantinos Roubos, published by National Institute of Horticultural Research
This work is licensed under the Creative Commons License.