Coupling Diversity Indices with Boosted Regression Trees Predicts Species Abundance and Spatial Community Patterns in Dry Afromontane Forests
References
- Abrha, H., Birhane, E., Hagos, H., & Manaye, A. (2018). Predicting suitable habitats of endangered Juniperus procera tree under climate change in Northern Ethiopia. Journal of Sustainable Forestry, 37(8), 842–853. https://doi.org/10.1080/10549811.2018.1494000
- Agis, D., Tur, J., Moriña, D., Puig, P., & Fernández-Fontelo, A. (2024). good: An R package for modelling count data. Methods in Ecology and Evolution, 15, 2192–2197. https://doi.org/10.1111/2041-210X.14387
- Ahmed, S., Lemessa, D., & Seyum, A. (2022). Woody Species Composition , Plant Communities , and Environmental Determinants in Gennemar Dry Afromontane Forest , Southern Ethiopia. Hindawi Scientific. https://doi.org/https://doi.org/10.1155/2022/7970435 Research
- Aynekulu, E., Aerts, R., Denich, M., Negussie, A., Friis, I., Demissew, S., & Boehmer, H.J. (2016). Plant diversity and regeneration in a disturbed isolated dry Afromontane forest in northern Ethiopia. Folia Geobotanica. https://doi.org/10.1007/s12224-016-9247-y
- Aynekulu, E., Aerts, R., Moonen, P., Denich, M., Gebrehiwot, K., Vågen, T. G., Mekuria, W., & Boehmer, H. J. (2012). Altitudinal variation and conservation priorities of vegetation along the Great Rift Valley escarpment, northern Ethiopia. Biodiversity and Conservation, 21(10), 2691–2707. https://doi.org/10.1007/s10531-012-0328-9
- Birhane, E., Gidey, T., Abrha, H., Brhan, A., Zenebe, A., & Gebresamuel, G Noulèkoun, F. (2023). Impact of land-use and climate change on the population structure and distribution range of the rare and endangered Dracaena ombet and Dobera glabra in northern Ethiopia. Journal for Nature Conservation, 76, 126506.
- Birhanu, L., Moges, G., Amsalu, N., & Balzter, H. (2025). Woody species diversity, structure and community distribution along environmental gradients of Seqela Dry Afromontane forest in Northwestern Ethiopia. PLoS ONE, 20(1), 1–21. https://doi.org/10.1371/journal.pone.0313020
- Borcard, D., Gillet, F., & Legendre, P. (2018). Numerical Ecology with R (R. Gentleman, K. Hornik, & G. G. Parmigiani (eds.)). Springer New York Dordrecht London Heidelberg. https://doi.org/10.1007/978-1-4419-7976-6
- Cai, L., Kreft, H., Taylor, A., Denelle, P., Schrader, J., Essl, F., Kleunen, M. Van, Pergl, J., Py, P., Stein, A., Winter, M., & Barcelona, J. F. (2023). Global models and predictions of plant diversity based on advanced machine learning techniques. New Phytologist, 237, 1432–1445. https://doi.org/10.1111/nph.18533
- Chitayat, A.B., Lewis, M., Anyelwisye, M., Laizer, G. S., Stewart, F.A., Wich, S.A., & Piel, A.K. (2024). Development of spatial models and maps for tree species diversity and biomass in a miombo ecosystem, western Tanzania. Applied Vegetation Science, 27(4). https://doi.org/10.1111/avsc.70002
- Dagne, Y., & Birhanu, L. (2023). Floristic composition and plant community distribution along environmental gradients in Guard dry Afromontane forest of Northwestern Ethiopia. BMC Ecology and Evolution, 23:43, 1–17. https://doi.org/10.1186/s12862-023-02154-6
- Dedman, S., Officer, R., Clarke, M., Reid, D.G., & Brophy, D. (2017). Gbm . auto : A software tool to simplify spatial modelling and Marine Protected Area planning. PLoS ONE, 12(12), 1–16.
- Deressa, D., Egigu, M.C., & Sasikumar, J.M. (2023). Population Structure and Regeneration Status of Woody Plant Species in Tulu Korma Dry Afromontane Forest, West Shewa Zone, Oromia, Ethiopia. Scientifica. https://doi.org/10.1155/2023/9964663
- Dessie, Y., Amsalu, N., Awoke, B., & Gebeyehu, G. (2025). Floral diversity , structural integrity , and regeneration patterns of Endba-Zend dry Afromontane forest in Northwestern Ethiopia. BMC Ecology and Evolution, 25:49, 1 of 21.
- Dixon, P. (2016). Computer program review VEGAN , a package of R functions for community ecology. Journal of Vegetation Science, 14(6), 927–930.
- Elith, J., & Leathwick, J. R. (2009). Species Distribution Models : Ecological Explanation and Prediction Across Space and Time. Annu. Rev. Ecol. Evol. Syst, 40, 677–697. https://doi.org/10.1146/annurev.ecolsys.110308.120159
- Elith, J., Leathwick, J.R., & Hastie, T. (2008). A working guide to boosted regression trees. Journal of Animal Ecology, 77, 802–813. https://doi.org/10.1111/j.1365-2656.2008.01390.x
- Enquist, B.J., Feng, X., Boyle, B., Maitner, B., Newman, E.A., Jørgensen, P.M., Roehrdanz, P.R., Thiers, B.M., Burger, J.R., Corlett, R.T., Couvreur, T.L.P., Dauby, G., Donoghue, J.C., Schildhauer, M., Šímová, I., Violle, C., Wieringa, J.J., & Wiser, S.K. (2019). The commonness of rarity : Global and future distribution of rarity across land plants. SCIENCE ADVANCES, 5, 1–14.
- Espíndola, R.P., Picanço, M.M., Andrade, L.P. De, Francisco, N., & Ebecken, F. (2025). Applications of Machine Learning Methods in Sustainable Forest Management. Climate, 13(159), 1–16.
- F. Dormann, C., M. McPherson, J., B. Araújo, M., Bivand, R., Bolliger, J., Carl, G., G. Davies, R., Hirzel, A., Jetz, W., Daniel Kissling, W., Kühn, I., Ohlemüller, R., R. Peres-Neto, P., Reineking, B., Schröder, B., M. Schurr, F., & Wilson, R. (2007). Methods to account for spatial autocorrelation in the analysis of species distributional data: A review. Ecography, 30(5), 609–628. https://doi.org/10.1111/j.2007.0906-7590.05171.x
- Galili, T. (2015). dendextend: an R package for visualizing, adjusting, and comparing trees of hierarchical clustering. Bioinformatics. https://doi.org/10.1093/bioinformatics/btv428
- Gaspard, G., & Kim, D. (2019). Residual spatial autocorrelation in macroecological and biogeographical modeling : a review. Journal of Ecology and Environment, 43:19, 1–11.
- Gebirehiwot, H. T., Kedanu, A. A., Guangul, A. A., & Adugna, M. T. (2023). Floristic Composition , Structure , And Regeneration Status Of Woody Plant Species In Hurubu Natural Forest , North Shewa , Oromia Region , Ethiopia. Journal of Landscape Ecology (Czech Republic), 16(1). https://doi.org/10.2478/jlecol-2023-0005
- Haile, M., Birhane, E., Rannestad, M.M., & Adaramola, M.S. (2021). Expansive shrubs: Expansion factors and ecological impacts in northern Ethiopia. Journal for Nature Conservation, 61(August 2019), 125996. https://doi.org/10.1016/j.jnc.2021.125996
- Hill, L., Hector, A., Hemery, G., Smart, S., Tanadini, M., & Brown, N. (2017). Abundance distributions for tree species in Great Britain : A two- stage approach to modeling abundance using species distribution modeling and random forest. Ecology and Evolution, 7, 1043–1056. https://doi.org/10.1002/ece3.2661
- Hishe, H., Giday, K., Van Orshoven, J., Muys, B., Taheri, F., Azadi, H., Feng, L., Zamani, O., Mirzaei, M., & Witlox, F. (2020). Analysis of Land Use Land Cover Dynamics and Driving Factors in Desa’a Forest in Northern Ethiopia. Land Use Policy, 101, 105039. https://doi.org/10.1016/j.landusepol.2020.105039
- Hordijk, I., Bialic-Murphy, L., Lauber, T., Routh, D., Poorter, L., Rivers, M. C., ter Steege, H., Liang, J., Reich, P. B., de-Miguel, S., Nabuurs, G. J., Gamarra, J. G. P., Chen, H. Y. H., Zhou, M., Wiser, S. K., Pretzsch, H., Paquette, A., Picard, N., Hérault, B., … Crowther, T. W. (2024). Dominance and rarity in tree communities across the globe: Patterns, predictors and threats. Global Ecology and Biogeography, 33(10). https://doi.org/10.1111/geb.13889
- Irving, K., Jähnig, S.C., Kuemmerlen, M., Irving, K., Jähnig, S.C., Identifying, M.K., & Irving, K. (2019). Identifying and applying an optimum set of environmental variables in species distribution models distribution models. Inland Waters, 0(0), 1–18. https://doi.org/10.1080/20442041.2019.1653111
- Karger, D.N., Kessler, M., Lehnert, M., & Jetz, W. (2021). worldwide. Nature Ecology & Evolution, 5(June). https://doi.org/10.1038/s41559-021-01450-y
- Kassun, B.W., Kallio, A.M.I., Tr, E., & Rannestad, M.M. (2024). Forest Ecology and Management Vegetation density and altitude determine the supply of dry Afromontane forest ecosystem services : Evidence from Ethiopia. Forest Ecology and Management, 552. https://doi.org/10.1016/j.foreco.2023.121561
- Keck, F., Peller, T., Alther, R., Barouillet, C., & Blackman, R. (2025). The global human impact on biodiversity. Nature, 641(February). https://doi.org/10.1038/s41586-025-08752-2
- Lai, J., Tang, J., Li, T., Zhang, A., & Mao, L. (2024). Plant Diversity Evaluating the relative importance of predictors in Generalized Additive Models using the gam . hp R package. Plant Diversity, 46(4), 542–546. https://doi.org/10.1016/j.pld.2024.06.002
- Magurran, A.E. (2004). Measuring Biological Diversity. Journal of the Torrey Botanical Society. https://doi.org/10.2307/4126959
- Pebesma, E. (2018). Simple Features for R: Standardized Support for Spatial Vector Data. The R Journal, 10(1), 439–446. https://doi.org/10.32614/RJ-2018-009
- Reshad, M. (2019). Woody Species Richness and Diversity at Ades Dry Afromontane Forest of South Eastern Ethiopia. American Journal of Agriculture and Forestry, 7(2), 44. https://doi.org/10.11648/j.ajaf.20190702.12
- Samuel, D., Derero, A., & Hadgu, K.M. (2019). Tree species diversity and spatial distribution patterns on agricultural landscapes in sub-humid Oromia, Ethiopia. Agroforestry Systems, 93(3), 1015–1029. https://doi.org/10.1007/s10457-018-0197-7
- Sertse, D., & Gailing, O. (2011). Anthropogenic and natural causes influencing population genetic structure of Juniperus procera Hochst . ex Endl . in the Ethiopian highlands. Genet Resour Crop Evol, 58, 849–859. https://doi.org/10.1007/s10722-010-9623-z
- Sherafu, Z., Egigu, M.C., & Sasikumar, J.M. (2024). Floristic Composition, Diversity, and Regeneration of Woody Plant Species of Dabal Forest in Southeastern Ethiopia: Implication for Conservation. Scientifica, 1–8. https://doi.org/10.1155/2024/7414375
- Siyum, Z.G., Ayoade, J.O., Onilude, M.A., & Feyissa, M.T. (2019). Growth trajectories and ages of main tree species in dry Afromontane forest fragments of northern Ethiopia. Forest Ecosystems, 6(15). https://doi.org/https://doi.org/10.1186/s40663-019-0178-y
- Tefera, Y., Leulekal, E., & Warkineh, B. (2024). Woody Plant Diversity of Wof Ayzurish Forests, the Dry Afromontane of the North Shewa of Ethiopia: Regeneration and community type with Environmental gradient. Trees, Forests and People, 16(May), 100562. https://doi.org/10.1016/j.tfp.2024.100562
- Tekle, T., & Maryo, M. (2022). Ecological Assessment Of Woody Plant Diversity And The Associated Threats In Afromontane Forest Of Ambericho , Southern Ethiopia. AJournal of Landscape Ecology, 15(2).
- Tilahun, M., Angassa, A., Bora, Z., Mengistu, S., & Wu, J. (2025). Phenotypic plasticity and genetic variation of Prosopis juliflora (Sw.) DC. across diverse rangelands in northeastern Ethiopia. Ecological Processes, 14(1). https://doi.org/10.1186/s13717-024-00575-9
- Wassie, K.B., Walle, G.C., & Alemnew, A.T. (2024). Woody species composition, structure and regeneration status of Alka forest Beyeda District, North Gondar Zone, Amhara Region, Northern Ethiopia. BMC Plant Biology, 24(1). https://doi.org/10.1186/s12870-024-05822-x
- Wickham, H. (2010). A Layered Grammar of Graphics. Journal of Computational and Graphical Statistics, 19(1), 3–28. https://doi.org/10.1198/jcgs.2009.07098
- Woldearegay, M., & Woldu, Z. (2020). Vegetation structure and regeneration status of the moist, evergreen, afromontane Bore–Anferara–Wadera forest in southern Ethiopia. Journal of Forestry Research, 31(3), 953–967. https://doi.org/10.1007/s11676-018-00872-y
- Yinebeb, M., Lulekal, E., & Bekele, T. (2023). Ecological determinants in plant community structure across dry afromontane forest patches of Northwestern Ethiopia. BMC Ecology and Evolution, 23:68, 1–13. https://doi.org/10.1186/s12862-023-02176-0
- Young, N.E., Stohlgren, T.J., Evangelista, P.H., Graham, J., & Newman, G. (2011). Regional data refine local predictions: modeling the distribution of plant species abundance on a portion of the central plains. Environ Monit Assess, 1–13. https://doi.org/10.1007/s10661-011-2351-9
- Zenebe, G., Zenebe, A., Birhane, E., Girma, A., & Shiferaw, H. (2024). Revealing suitable habitats for Juniperus procera and Olea europaea tree species in the remnant dry Afromontane forests of Ethiopia: Insights from ensemble species distribution modeling approach. Ecology and Evolution, 14(10). https://doi.org/10.1002/ece3.70343
Language: English
Submitted on: Aug 16, 2025
Accepted on: Apr 3, 2026
Published on: Jun 19, 2026
Published by: Czech Society for Landscape Ecology
In partnership with: Paradigm Publishing Services
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© 2026 Gebreyohannes Zenebe, Amanuel Zenebe, Atkilt Girma, Yemane Kahsai, Aklilu Negussie, Robert Marchant, Aster Gebrekirstos, Emiru Birhane, published by Czech Society for Landscape Ecology
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