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A Deep Learning Framework for Brain Tumor Classification Using VGG16-Based Autoencoder with BiLSTM Feature Refinement Cover

A Deep Learning Framework for Brain Tumor Classification Using VGG16-Based Autoencoder with BiLSTM Feature Refinement

Open Access
|Feb 2026

Figures & Tables

Table 1:

Comparative analysis of recent BT classification studies

StudyMethodologyDatasetKey contributionsLimitations
Shib et al [1]VGG16-based CNNKaggle Brain MRIDemonstrated pretrained CNNs improve classification accuracyNo temporal/sequential modeling; single-step classification
Hafeez et al. [2]CNN with custom layersPublic MRI datasetReinforced importance of convolutional feature extractionNo recurrent or sequential modeling explored
Manjunath et al. [6]Fine-tuned deep learning modelsBrain MRI DatasetPretrained architectures provide strong baselineExtensive hyperparameter tuning required; no hybrid model
Khan et al. [4]Hybrid-Net (DenseNet + SVM)Public MRI datasetCombined deep features with traditional classifiersNo ablation study; lacks temporal modeling
Saeedi et al. [8]CNN + SVMPublic Brain MRITwo-step pipeline (feature extraction + classification)No end-to-end joint optimization
Bouhafra & El Bahi [9]Systematic reviewMultiple MRI datasetsComprehensive survey of deep learning methodsNo sequential modeling in proposed frameworks
Alrashedy et al. [10]BrainGAN (GAN + CNN)Public brain MRISynthetic data augmentation to address dataset sizeNo recurrent/temporal modeling
Tabatabaei et al. [11]CNN + transformerBrain MRI DatasetAttention-based feature modeling improves interpretabilityHigh computational cost; lacks explicit temporal modeling
Şahin et al. [12]ViTBrain MRI DatasetMultiobjective optimization for efficient classificationGlobal attention may miss local sequential dependencies

[i] BT, brain tumor; CNNs, convolutional neural networks; GAN, generative adversarial network; MRI, magnetic resonance imaging; SVM, support vector machine; ViT, vision transformer.

Figure 1:

Overview of the architecture. MRI, magnetic resonance imaging.

Table 2:

Hyperparameter tuning

HyperparameterFinal value
Learning rate0.0001
OptimizerAdam
Batch size32
Epochs50
BiLSTM units128
Dropout rate0.5

[i] BiLSTM, Bi-Directional Long Short-Term Memory.

Table 3:

Quantitative performance metrics

MetricMean (%)95% CI (%)
Accuracy96.8±0.5
Precision97.1±0.4
Recall96.5±0.6
F1-score96.8±0.5
ROC-AUC0.985±0.004

[i] CI, confidence interval.

Table 4:

Error analysis

MetricStandard deviation (%)
Accuracy0.22
Precision0.18
Recall0.24
F1-score0.21
Figure 2:

Grad-CAM attention maps generated from the VGG16 encoder of the proposed VGG16-CAE + BiLSTM framework. BiLSTM, Bi-Directional Long Short-Term Memory; CAE, convolutional autoencoder.

Table 5:

Confusion matrix

Predicted tumorPredicted no tumor
Actual tumor291 ± 59 ± 4
Actual no tumor11 ± 3289 ± 5
Figure 3:

Confusion matrix.

Figure 4:

Training and validation loss and accuracy curves for the VGG16-CAE + BiLSTM framework. BiLSTM, Bi-Directional Long Short-Term Memory; CAE, convolutional autoencoder.

Table 6:

Comparative evaluation of the proposed framework against baseline models

ModelAccuracy (%)Precision (%)Recall (%)F1-Score (%)ROC-AUC
Standard VGG16 (pretrained CNN)91.2 ± 0.891.5 ± 0.790.8 ± 0.991.1 ± 0.80.943 ± 0.007
ResNet50 (pretrained CNN)92.5 ± 0.792.7 ± 0.692.0 ± 0.892.3 ± 0.70.951 ± 0.006
DenseNet121 (pretrained CNN)93.1 ± 0.793.5 ± 0.692.7 ± 0.793.1 ± 0.70.957 ± 0.005
VGG16-CAE (without BiLSTM)94.3 ± 0.694.5 ± 0.594.0 ± 0.694.2 ± 0.50.970 ± 0.005
Proposed VGG16-CAE + BiLSTM96.8 ± 0.597.1 ± 0.496.5 ± 0.696.8 ± 0.50.985 ± 0.004

[i] BiLSTM, Bi-Directional Long Short-Term Memory; CAE, convolutional autoencoder; CNNs, convolutional neural networks; ROC-AUC.

Figure 5:

Comparison of model performance across various models.

Table 7:

ROC analysis

ModelROC-AUC
VGG160.943
ResNet500.951
DenseNet1210.957
VGG16-CAE (without BiLSTM)0.970
Proposed VGG16-CAE + BiLSTM0.985

[i] BiLSTM, Bi-Directional Long Short-Term Memory; CAE, convolutional autoencoder.

Figure 6:

Accuracy analysis.

Figure 7:

Precision analysis.

Figure 8:

Recall analysis.

Figure 9:

F1 score comparison.

Table 8:

Comparative analysis of the proposed framework with recent literature

StudyMethodologyDatasetAccuracy (%)Precision (%)Recall (%)F1-Score (%)
Shib et al. [1]VGG16-based CNNBrain MRI Kaggle Dataset94.094.393.894.1
Hafeez et al. [2]CNN with custom layersPublic MRI dataset92.593.091.892.4
Manjunath et al. (2025) [6]Fine-tuned deep learning modelsBrain MRI Dataset95.195.394.895.0
Saeedi et al. (2023) [8]CNN + SVM ClassifierPublic brain MRI Dataset93.794.093.293.6
Proposed VGG16-CAE + BiLSTMVGG16-based CAE + BiLSTMKaggle Brain MRI Dataset96.8 ± 0.597.1 ± 0.496.5 ± 0.696.8 ± 0.5

[i] BiLSTM, Bi-Directional Long Short-Term Memory; CAE, convolutional autoencoder; CNNs, convolutional neural networks; MRI, magnetic resonance imaging; SVMs, support vector machines.

Language: English
Submitted on: May 23, 2025
Published on: Feb 20, 2026
Published by: International Journal on Smart Sensing and Intelligent Systems
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year

© 2026 S. Jansi, P. T. Bharathi, A. B. Feroz Khan, R. Jayanthi, published by International Journal on Smart Sensing and Intelligent Systems
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.