Have a personal or library account? Click to login
Differentiation between Botryosphaeria dothidea and Neofusicoccum spp. based on a single nucleotide polymorphism in the ITS region Cover

Differentiation between Botryosphaeria dothidea and Neofusicoccum spp. based on a single nucleotide polymorphism in the ITS region

Open Access
|Jul 2022

References

  1. Abdollahzadeh, J. and Zolfaghari S. 2014. Efficiency of rep-PCR fingerprinting as a useful technique for molecular typing of plant pathogenic fungal species: Botryosphaeriaceae species as a case study. FEMS Microbiology Letters, 361: 144–157.10.1111/1574-6968.12624
  2. Batista, E., Lopes, A. and Alves, A. 2021. What do we know about botryosphaeriaceae? An overview of a worldwide cured dataset. Forests, 12.10.3390/f12030313
  3. Carvalho, J., Yadav, S., Garrido-Maestu, A., Azinheiro, S., Trujillo, I., Barros-Velázquez, J. and Prado, M. 2021. Evaluation of simple sequence repeats (SSR) and single nucleotide polymorphism (SNP)-based methods in olive varieties from the Northwest of Spain and potential for miniaturization. Food Chemistry: Molecular Sciences, 3: 1–10.10.1016/j.fochms.2021.100038
  4. Chen, S., Li, G., Liu, F. and Michailides, T.J. 2015. Novel species of Botryosphaeriaceae associated with shoot blight of pistachio. Mycologia 107: 780–792.10.3852/14-24225977211
  5. Chen, S.F., Morgan, D.P. and Michailides, T.J. 2014. Botryosphaeriaceae and Diaporthaceae associated with panicle and shoot blight of pistachio in California, USA. Fungal Diversity, 67: 157–179.10.1007/s13225-014-0285-6
  6. Flowers, J., Hartman, J. and Vaillancourt, L. 2003. Detection of Latent Sphaeropsis sapinea Infections in Austrian Pine Tissues Using Nested-Polymerase Chain Reaction. Phytopathology, 93: 1471–1477.10.1094/PHYTO.2003.93.12.1471
  7. Gaudet, M., Fara, A.-G., Beritognolo, I. and Sabatti, M. 2009. Allele-Specific PCR in SNP Genotyping. In: Single Nucleotide Polymorphisms: Methods and Protocols (A.A. Komar, ed.), 415–424.10.1007/978-1-60327-411-1_26
  8. Kumar, S., Stecher, G., Li, M., Knyaz, C. and Tamura, K. 2018. MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms. Molecular Biology and Evolution, 35: 1547–1549.10.1093/molbev/msy096
  9. Lazzizera, C., Frisullo, S., Alves, A. and Phillips, A.J.L. 2008. Morphology, phylogeny and pathogenicity of Botryosphaeria and Neofusicoccum species associated with drupe rot of olives in southern Italy. Plant Pathology, 57: 948–956.10.1111/j.1365-3059.2008.01842.x
  10. Lopes, A., Phillips, A.J. and Alves, A. 2017. Mating type genes in the genus Neofusicoccum: Mating strategies and usefulness in species delimitation. Fungal Biology, 121: 394–404.10.1016/j.funbio.2016.08.01128317541
  11. Madeira, F., Park, Y. Mi, Lee, J., Buso N., Gur T., Madhusoodanan, N., Basutkar, P., Tivey, A.R.N., Potter., S.P., Finn., R.D. and Lopez, R. 2019. The EMBL-EBI search and sequence analysis tools APIs in 2019. Nucleic Acids Research, 47: W636–W641.10.1093/nar/gkz268
  12. Marsberg, A., Kemler, M., Jami, F., Nagel, J.H., Post-ma-Smidt, A., Naidoo, S., Wingfield, M.J., Crous, P.W., Spatafora, J.W., Hesse, C.N., Robbertse, B. and Slippers B. 2017. Botryosphaeria dothidea: a latent pathogen of global importance to woody plant health. Molecular Plant Pathology, 18: 477–488.10.1111/mpp.12495
  13. National Center for Biotechnology Information (NCBI)[Internet]. Bethesda (MD): National Library of Medicine (US), National Center for Bio-technology Information, 1988. Available at: https://www.ncbi.nlm.nih.gov. Accessed May 11, 2021.
  14. Owczarzy, R., Tataurov, A.V, Wu, Y., Manthey, J.A., McQuisten, K.A., Almabrazi, H.G., Pedersen, K.F., Lin, Y., Garretson, J., McEntaggart, N.O., Sailor, C.A., Dawson, R.B. and Peek, A.S. 2008. IDT SciTools: a suite for analysis and design of nucleic acid oligomers. Nucleic Acids Research, 36: W163-9.10.1093/nar/gkn198
  15. Pavlic, D., Slippers, B., Coutinho, T.A. and Wingfield, M.J. 2009. Multiple gene genealogies and phenotypic data reveal cryptic species of the Botryosphaeriaceae: A case study on the Neofusicoccum parvum/N. ribis complex. Molecular Phylogenetics and Evolution, 51: 259–268.10.1016/j.ympev.2008.12.01719152837
  16. Ridgway, H.J., Amponsah, N.T., Brown, D.S., Baskarathevan, J., Jones, E.E. and Jaspers, M.V. 2011. Detection of botryosphaeriaceous species in environmental samples using a multi-species primer pair. Plant Pathology, 60: 1118–1127.10.1111/j.1365-3059.2011.02474.x
  17. Slippers, B., Smit, W.A., Crous, P.W., Coutinho, T.A., Wingfield, B.D. and Wingfield, M.J. 2007. Taxonomy, phylogeny and identification of Botryosphaeriaceae associated with pome and stone fruit trees in South Africa and other regions of the world. Plant Pathology, 56: 128–139.10.1111/j.1365-3059.2006.01486.x
  18. Untergasser, A., Cutcutache, I., Koressaar, T., Ye, J., Faircloth, B.C., Remm, M. and Rozen, S.G. 2012. Primer3--new capabilities and interfaces. Nucleic Acids Research, 40: 1–12.10.1093/nar/gks596
DOI: https://doi.org/10.2478/hppj-2022-0006 | Journal eISSN: 2732-656X | Journal ISSN: 1791-3691
Language: English
Page range: 49 - 56
Submitted on: Nov 1, 2021
Accepted on: Nov 17, 2021
Published on: Jul 11, 2022
Published by: Benaki Phytopathological Institute
In partnership with: Paradigm Publishing Services
Publication frequency: 2 issues per year

© 2022 S. Palavouzis, A. Triantafyllopoulou, A.K. Tzima, E.J. Paplomatas, published by Benaki Phytopathological Institute
This work is licensed under the Creative Commons Attribution 4.0 License.