References
- Agarwal, T., Khillare, P.S., Shridhar, V., Ray, S. (2009): Pattern, sources and toxic potential of PAHs in the agricultural soils of Delhi, India. J Hazard Mater, 163(2-3): 1033–1039. DOI:10.1016/j.jhazmat.2008.07.058
- Alexander, M. (2000): Aging, bioavailability, and overestimation of risk from environmental pollutants. Environ Sci Technol, 34(20): 4259–4265. DOI: 10.1021/es001069+
- Bejarano, A., Michel, J. (2016): Oil spills and their impacts on sand beach invertebrate communities: A literature review. Environ Pollut, 218: 709–722. DOI: 10.1016/j.envpol.2016.07.065
- Bengtson, J. (2002): Disturbance and resilience in soil animal communities. Eur J Soil Biol, 38: 119–125. DOI: 10.1016/S1164-5563(02)01133-0
- Blakely, J.K., Neher, D.A., Spongberg, A.L. (2002): Soil invertebrate and microbial communities, and decomposition as indicators of polycyclic aromatic hydrocarbon contamination. Appl Soil Ecol, 21(1): 71–88. DOI: 10.1016/S0929-1393(02)00023-9
- Bongers, T., Bongers, M. (1998): Functional diversity of nematodes. Appl Soil Ecol, 10(3): 239–251. DOI: 10.1016/S0929-1393(98)00123-1
- Bongers, T., Ferris, H. (1999): Nematode community structure as a bioindicator in environmental monitoring. Trends Ecol Evol, 14(6): 224–228. DOI: 10.1016/S0169-5347(98)01583-3
- Bongers, T. (1990): The maturity index: an ecological measure of environmental disturbance based on nematode species composition. Oecologia, 83(1): 14–19. DOI: 10.1007/BF00324627
- Briar, S.S., Fonte, S.J., Park, I., Six, J., Scow, K., Ferris, H. (2011): The distribution of nematodes and soil microbial communities across soil aggregate fractions and farm management systems. Soil Biol Biochem, 43: 905–914. DOI: 10.1016/j.soil-bio.2010.12.017
- Cerniglia, C.E. (1992): Biodegradation of polycyclic aromatic hydrocarbons. Biodegradation, 3, 351–368.
- Georgieva, S.S., Mcgrath, S.P., Hooper, D.J., Chambers, B.S. (2002): Nematode communities under stress: the long–term effects of heavy metals in soil treated with sewage sludge. Appl Soil Ecol, 20: 27–42. DOI: 10.1016/S0929-1393(02)00005-7
- Chen, G., Qin, J., Shi, D., Zhang, Y., Ji, W. (2009): Diversity of soil nematodes in areas polluted with heavy metals and polycyclic aromatic hydrocarbons (PAHs) in Lanzhou, China. Environ Manage, 44(1): 163–172. DOI: 10.1007/s00267-008-9268-2
- Cofield, N., Banks, M.K., Schwab, A.P. (2008): Lability of polycyclic aromatic hydrocarbons in the rhizosphere. Chemosphere, 70(9): 1644–1652. DOI: 10.1016/j.chemosphere.2007.07.057
- Donn, S., Neilson, R., Grifiths, B.S., Daniell, T.J. (2012): A novel molecular approach for rapid assessment of soil nematode assemblages – variation, validation and potential applications. Methods Ecol Evol, 3: 12–23. DOI: 10.1111/j.2041-210X.2011.00145.x
- Duan, L., Naidu, R., Thavamani, P., Meaklim, J., Megharaj, M. (2015): Managing long-term polycyclic aromatic hydrocarbon contaminated soils: a risk-based approach. Environ Sci Pollut Res, 22(12): 8927–8941. DOI: 10.1007/s11356-013-2270-0
- Egres, A.G., Hatje, V., Miranda, D.A., Gallucci, F., Barros, F. (2019): Functional response of tropical estuarine benthic assemblages to perturbation by Polycyclic Aromatic Hydrocarbons. Ecol Ind, 96: 229–240. DOI: 10.1016/j.ecolind.2018.08.062
- Erstfeld, K.M., Snow-Ashbrook, J. (1999): Effects of chronic low-level PAH contamination on soil invertebrate communities. Chemosphere, 39(12): 2117–2139. DOI: 10.1016/s0045-6535(98)00421-4
- Faber, J.H., Creamer, R.E., Mulder, Ch., Römbke, J., Rutgers, M., Sousa, P., Stone, D., Grifiths, B.S. (2013): The Practicalities and Pitfalls of Establishing a Policy‐Relevant and Cost‐Effective Soil Biological Monitoring Scheme. Integr Environ Assess Manag, 9(2): 276–284. DOI: 10.1002/ieam.1398
- Ferris, H., Bongers, T., De Goede, R.G.M. (2001): A framework for soil food web diagnostics: extension of the nematode faunal analysis concept. Appl Soil Ecol, 18(1): 13–29. DOI: 10.1016/S0929-1393(01)00152-4
- Hlava, J., Száková, J., Vadlejch, J., Čadková, Z., Balík, J., Tlust oš, P. (2017): Long-term application of organic matter based fertilisers: Advantages or risks for soil biota? A review. Environ Rev, 25(4): 408–414. DOI:10.1139/er-2017-0011
- Höss, S., Jänsch, S., Moser, T., Junker, T., Römbke, J. (2009): Assessing the toxicity of contaminated soils using the nematode Caenorhabditis elegans as test organism. Ecotoxicol Environ Saf, 72(7): 1811–1818. DOI:10.1016/j.ecoenv.2009.07.003
- Höss, S., Spira, D., Gilbert, D., Melbye, K. (2007): The SeKT Joint Research Project—TV3: effects of spiked natural and artificial sediments on the nematode Caenorhabditis elegans. In: 17th Annual Meeting of Setac Europe; 20–24 May 2007; Porto. Porto, Portugal Jones, O.A.H., Spurgeon, D.J., Svendsen, C., Griffin, J.L. (2008): A metabolomics based approach to assessing the toxicity of the polyaromatic hydrocarbon pyrene to the earthworm Lumbricus rubellus Chemosphere, 71(3): 601–609. DOI: 10.1016/j.chemosphere.2007.08.056
- Kammenga, J.E., Van Gestel, C.A.M., Bakker, J. (1994): Patterns of sensitivity to cadmium and pentachlorophenol among nematode species from different taxonomic and ecological groups. Arch Environ Contam Toxicol, 27(1): 88–94. DOI: 10.1007/BF00203892
- Kraft, N.J.B., Adler, P.B., Godoy, O., James, E., Fuller, S., Levine, J.M. (2015): Community assembly, coexistence and the environmental filtering metaphor. Funct Ecol, 29(5): 592–599. DOI: 10.1111/1365-2435.12345
- Kuppusamy, S., Thavamani, P., Venkateswarlu, K., Lee, B.Y., Naidu, R., Megharaj, M. (2017): Remediation approaches for polycyclic aromatic hydrocarbons (PAHs) contaminated soils: Technological constraints, emerging trends and future directions. Chemosphere, 168: 944–968. DOI:10.1016/j.chemosphere.2016.10.115
- Langenbach, T. (2013): Persistence and bioaccumulation of persistent organic pollutants (POPs). In Patil, Y., Rao, P. (Eds) Applied Bioremediation. Intech, London. DOI: 10.5772/56418
- Lerda, D. (2011): Polycyclic Aromatic Hydrocarbons (PAHs) Fact-sheet (4th edition). European Commission, Joint Research Centre, and Institute for Reference Materials and Measurements, p 34
- Li, F., Neher, D.A., Darby, B.J., Weicht, T.R. (2005): Observed differences in life history characteristics of nematodes Aphelenchus and Acrobeloides upon exposure to copper and benzo(a)pyrene. Ecotoxicology, 14(4): 419–429. DOI: 10.1007/s10646-004-1347-4Lott, M.J., Hose, G.C., Power, M.L. (2014): Towards the molecular characterisation of parasitic nematode assemblages: An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis. Experiment Parasitol, 144: 76–83. DOI: 10.1016/j.exp-para.2014.06.011
- Menzel, R., Bogaert, T., Achazi, R. (2001): A systematic gene expression screen of Caenorhabditis elegans cytochrome P450 genes reveals CYP35 as strongly xenobiotic inducible. Arch Bio-chem Biophys, 395(2): 158–168. DOI: 10.1006/abbi.2001.2568
- Menzel, R., Rodel, M., Kulas, J., Steinberg, C.E. (2005): CYP35: xenobiotically induced gene expression in the nematode Caenorhabditis elegans Arch Biochem Biophys, 438(1): 93–102. DOI: 10.1016/j.abb.2005.03.020
- Monteiro, L., Traunspuger, W., Roeleveld, K., Lynen, F., Moens, T. (2018): Direct toxicity of the water-soluble fractions of a crude and a diesel-motor oil on the survival of free-living nematodes. Ecol Indic, 93: 13–23. DOI: 10.1016/j.ecolind.2018.04.066
- Moreno, M., Albertelli, A., Fabiano, M. (2009): Nematode response to metal, PAHs and organic enrichment in tourist marinas of the mediterranean sea. Mar Pollut Bull, 58: 1192–1201. DOI:10.1016/j.marpolbul.2009.03.016
- Näslund, J., Nascimento, F.J.A., Gunnarsson, J.S. (2010): Meiofauna reduces bacterial mineralization of naphthalene in marine sediment. Isme J, 4(11): 1421–1430. DOI: 10.1038/ismej.2010.63
- Navarro, S., Vela, N., Navarro, G. (2007): An overview on the environmental behaviour of pesticide residues in soils. Span. J Agric Res, 5(3): 357–375. DOI: 10.5424/sjar/2007053-5344
- Net, S., El-Osmani, R., Prygiel, E., Rabodonirina, S., Dumoulin, D., Ouddane, B. (2015): Overview of persistent organic pollution (PAHs, Me-PAHs and PCBs) in freshwater sediments from Northern France. J Geochem Explor, 48: 181–188. DOI: 10.1016/j.gexplo.2014.09.008
- Okere, U.V., Semple, K.T. (2011): Biodegradation of PAHs in ‘pristine’ soils from different climatic regions. J Bioremed Biodegr, 1: 1–11. DOI: 10.4172/2155-6199.S1-006
- Penning, T.M. (2014): Human aldo-keto reductases and the metabolic activation of polycyclic aromatic hydrocarbons. Chem Res Toxicol, 27(11): 1901–1917. DOI: 10.1021/tx500298n
- Pilloni, G., Granitsiotis, M.S., Engel, M., Lueders, T. (2012): Testing the limits of 454 pyrotag sequencing: reproducibility, quantitative assessment and comparison to T-RFLP fingerprinting of aquifer microbes. PLoS One, 7 (7): e40467. DOI: 10.1371/journal.pone.0040467
- Postma, J.F., Davids, C. (1995): Tolerance induction and life cycle changes in cadmium-exposed Chironomus riparius (Diptera) during consecutive generations. Ecotoxicol Environ Saf, 30(2): 195–202. DOI: 10.1006/eesa.1995.1024
- Reid, B.J., Jones, K.C., Semple, K.T. (2000): Bioavailability of persistent organic pollutants in soils and sediments—a perspective on mechanisms, consequences and assessment. Environ Pollut, 108(1): 103–112. DOI: 10.1016/S0269-7491(99)00206-7
- Sack, U., Heinze, T.M., Deck, J., Cerniglia, C.E., Martens, R., Zadrazil, F., Fritsche, W. (1997): Comparison of phenanthrene and pyrene degradation by different wood-decaying fungi. Appl Environ Microbiol, 63(10): 3919–3925
- Saint-Denis, M., Narbonne, J.F., Arnaud, C., Thybaud, E., Ribera, D. (1999): Biochemical responses of the earthworm Eisenia fetida andrei exposed to contaminated artificial soil: effects of benzo (a) pyrene. Soil Biol Biochem, 31(13): 1837–1846. DOI: 10.1016/S0038-0717(99)00106-6
- Snow-Ashbrook, J., Erstfeld, K.M. (1998): Soil nematode communities as indicators of the effects of environmental contamination with polycyclic aromatic hydrocarbons. Ecotoxicology, 7(6): 363–370. DOI: 10.1023/A:1008826230215
- Soto, L.A., Salcedo, D.L., Arvizu, K., Botello, A.V. (2017): Inter-annual patterns of the large free-living nematode assemblages in the mexican exclusive economic zone, NW Gulf of Mexico after the Deepwater Horizon oil spill. Ecol Indic, 79: 371–381. DOI: 10.1016/j.ecolind.2017.03.058
- Stone, D., Costa , D., Daniell, T.J., Mitchell, S.M., Topp, C.F.E., Griffiths, B.S. (2016): Using nematode communities to test a European scale soil biological monitoring programme for policy development. Appl Soil Ecol, 97: 78-85. DOI: 10.1016/j.ap-soil.2015.08.017
- Sun, M., Liu, K., Zhao, Y., Tian, D., Ye, M., Liu, M., Jiao, J., Jiang, X. (2017): Effects of bacterial-feeding nematode grazing and tea saponin addition on the enhanced bioremediation of pyrene-contaminated soil using polycyclic aromatic hydrocarbon-degrading bacterial strain. Pedosphere, 27(6): 1062–1072. DOI: 10.1016/S1002-0160(17)60451-X
- Swain, S., Wren, J.F., Stürzenbaum, S.R., Kille, P., Morgan, A.J., Jager, T., Jonker, M.J., Hankard, P.K., Svendsen, C., Owen, J., Hedley, B.A., Blaxter, M., Spurgeon, D.J. (2010): Linking toxicant physiological mode of action with induced gene expression changes in Caenorhabditis elegans BMC Syst Biol, 4(32): 1–19. DOI: 10.1186/1752-0509-4-32
- Šalamún, P., Hanzelová, V., Miklisová, D., Šestinová, O., Findoráková, L., Kováčik, P. (2017): The effects of vegetation cover on soil nematode communities in various biotopes disturbed by industrial emissions. Sci Total Environ, 592: 106–114. DOI: 10.1016/j.scitotenv.2017.02.238
- Šalamún, P., Kucanová, E., Brázová, T., Miklisová, D., Renčo, M., Hanzelová, V. (2014): Diversity and food web structure of nematode communities under high soil salinity and alkaline pH. Ecotoxicology, 23(8): 1367–1376. DOI: 10.1007/s10646-014-1278-7 Šalamún, P., Renčo, M., Kucanová, E., Brázová, T., Papajová, I., Miklisová, D., Hanzelová, V. (2012): Nematodes as bioindicators of soil degradation due to heavy metals. Ecotoxicology, 21: 2319–2330. DOI 10.1007/s10646-012-0988-y
- Taylor, J.W., Turner, E., Townsend, J.P., Dettman, J.R., Jacobson, D. (2006): Eukaryotic microbes, species recognition and geographic limits of species: examples from the kingdom Fungi. Phil Trans R Soc, B 361: 1947–1963. DOI: 10.1098/rstb.2006.1923
- Van Den Hoogen, J., Geisen, S., Wall, D.H., Wardle, D.A., Traunspurger, W., De Goede R.G.M., Adams, B.J., Ahmad, W., Ferris, H.L., Bardgett, R.D., et al. (2020). A global database of soil nematode abundance and functional group composition. Sci Data, 7: 103. DOI: 10.1038/s41597-020-0437-3
- Walker, B., Holling, C.S., Carpenter, S.R., Kinzig, A.P. (2004): Resilience, adaptability and transformability in social–ecological systems. Ecol Soc, 9(2): 5. DOI: 10.5751/ES-00650-090205
- Wang, Z., Chen, J., Yang, P., Qiao, X., Tian, F. (2007): Polycyclic aromatic hydrocarbons in Dalian soils: distribution and toxicity assessment. J. Environ Monitor, 9(2): 199–204. DOI: 10.1039/b617338c
- Wilcke, W., Amelung, W., Martius, C., Garcia, M.V.B., Zech, W. (2000): Biological sources of polycyclic aromatic hydrocarbons (PAHs) in the Amazonian rain forest. J Plant Nutr Soil Sci, 163(1): 27–30. DOI: 10.1002/(SICI)1522-2624(200002)163:1<27::AID-JPLN27>3.0.CO;2-E
- Wu, H., Huang, C., Taki, F.A., Zhang, Y., Dobbins, D.L., Li, L., Yan, H., Pan X. (2015): Benzo-α-pyrene induced oxidative stress in Caenorhabditis elegans and the potential involvements of microRNA. Chemosphere, 139: 496–503. DOI: 10.1016/j.chemosphere.2015.08.031
- Yeates, G.W., Bongers, T., De Goede, R.G.M., Freckman, W., Georgieva, S.S. (1993): Feeding habits in soil nematode families and genera – an outline for soil ecologists. J Nematol, 25(3): 315–331 Yu, K.S.H., Wong, A.H.Y., Yau, K.W.Y., Wong Y.S., Tam, N.F.Y. (2005): Natural attenuation, biostimulation and bioaugmentation on biodegradation of polycyclic aromatic hydrocarbons (PAHs) in mangrove sediments. Mar Pollut Bull, 51(8-12): 1071–1077. DOI: 10.1016/j.marpolbul.2005.06.006
- Yu, C., Liao, V.H.C. (2016): Transgenerational reproductive effects of arsenite are associated with H3K4 dimethylation and SPR-5 downregulation in Caenorhabditis elegans Environ Sci Technol, 2016, 50(19): 10673–10681. DOI: 10.1021/acs.est.6b02173
- Zhang, Y., Wang, F., Bian, Y., Kengara, F.O., Gu, C., Zhao, Q., Jiang, X. (2012): Enhanced desorption of humin-bound phenanthrene by attached phenanthrene-degrading bacteria. Bioresour Technol, 123: 92–97. DOI: 10.1016/j.biortech.2012.07.093
- Zhou, J., Sun, X., Jiao, J., Liu, M., Hu, F., Li, H. (2013): Dynamic changes of bacterial community under the influence of bacterial-feeding nematodes grazing in prometryne contaminated soil. Appl Soil Ecol, 64: 70–76. DOI: 10.1016/j.apsoil.2012.1