Have a personal or library account? Click to login
Genetic diversity and morphological variability of Iranian Silene aucheriana populations inferred from nrDNA ITS sequences and morphological analysis Cover

Genetic diversity and morphological variability of Iranian Silene aucheriana populations inferred from nrDNA ITS sequences and morphological analysis

Open Access
|Feb 2024

References

  1. Brothers, A., Weingartner, L., & Delph, L. (2016). Genetically based population divergence of Silene latifolia from two climate regions. Evolutionary ecology research, 17, 637–650.
  2. Chowdhuri, P. K. (1957). Studies in the genus Silene. Notes from the Royal Botanic Garden, Edinburgh, 22, 221–278.
  3. Coode, M. J., & Cullen, J. (1967). Silene L. In P. H. Davis (Ed.), Flora of Turkey and the East Aegean Islands (pp. 179-242). Edinburgh University Press.
  4. Del Valle, J. C., Soriguer, I., Buide, M., Narbona, E., & Whittall, J. B. (2019). Whole plastome sequencing within Silene section Psammophilae reveals mainland hybridization and divergence with the Balearic Island populations. Frontiers in Plant Science, 10, 1466. https://doi.org/10.3389/fpls.2019.01466
  5. Douzery, E. P., Pridgeon, A. M., Kores, P., Linder, H. P., Kurzwell, H., & Chase, M. (1999). Molecular phylogenetics of Diseae (Orchidaceae) a contribution from nuclear ribosomal ITS sequences. American Journal of Botany, 86(6), 887–899. https://doi.org/10.2307/2656709
  6. Doyle, J., & Doyle, L. (1990). Isolation of Plant DNA from Fresh Tissue. Focus, 12(1), 13-15.
  7. Duminil, J. Di., & Michele, M. (2009). Plant species delimitation a comparison of morphological and molecular markers. Plant Biosystems, 143, 528–542. https://doi.org/10.1080/11263500902722964
  8. Durović, S., Schönswetter, P., Niketić, M., Tomović, G., & Frajman, B. (2017). Disentangling relationships among the members of the Silene saxifraga alliance (Caryophyllaceae) Phylogenetic structure is geographically rather than axonomically segregated. Taxon, 66, 343–364. https://doi.org/10.12705/662.4
  9. Fick, S. E., & Hijmans, R. J. (2017). WorldClim 2: New 1‐km spatial resolution climate surfaces for global land areas: New climate surfaces for global land areas. The International Journal of Climatology, 37(12), 4302–4315. https://doi.org/10.1002/joc.5086
  10. Firat, M., & Yıldız, K. (2016). Silene konuralpii (Sect. Spergulifoliae, Caryophyllaceae), a new species from eastern Anatolia. Phytotaxa, 288, 214–226.
  11. Ghazanfar, S. A. (1984). Pollen morphology of the genus Silene L. (Caryophyllaceae) sections Siphonomorpha otth and Auriculatae (boiss) schischk. New Phytologist, 98, 683–690.
  12. Ghazanfar, S. A., & Edmondson, J. R. (2013). Flora of Iraq. Vol. 5(2). Ministry of Agriculture & Kew Publishing.
  13. Hammer, O., Harper, D., & Ryan, P. (2001). PAST: Paleontological Statistics Software Package for Education and Data Analysis. Palaeontologia Electronica, 4, 1–9.
  14. Heinrichs, J., Klugmann, F., Hentschel, J., & Schneider, H. (2009). DNA taxonomy, cryptic speciation and diversification of the Neotropical African liverwort, Marchesinia brachiata (Lejeuneaceae, Porellales). Molecular Biology and Evolution, 53, 113–121. https://doi.org/10.1016/j.ympev.2009.05.032
  15. Hijmans, R. J., Cameron, S. E., Parra, J. L., Jones, P. G., & Jarvis, A. (2005). Very high resolution nterpolated climate surfaces for global land areas. The International Journal of Climatology, 25, 1965–1978. https://doi.org/10.1002/joc.1276
  16. Karrenberg, S., Liu, X., Hallander, E., Favre, A., Herforth-Rahmé, J., & Widmer, A. (2018). Ecological divergence plays an important role in strong but complex reproductive isolation in campions (Silene). International Journal of Organic Evolution, 73, 245–261. https://doi.org/10.1111/evo.13652
  17. Maddison, D. R., & Maddison, W. P. (2000). MacClade 4. Sunderland Sinauer Associates. Published at http://macclade.org
  18. Melzheimer, V. (1988). Silene L. In K. Rechinger (Ed.), Flora des iranischen hochlandes und der umrahmenden Gerbirge (Persien, Afghanistan, Teile von West-Pakistan, Nord-Iraq, Azerbaidjan, Turkmenistan). Akademische Druck-u. Verlagsanstalt.
  19. Mucina, L. (1982). Numerical classification and ordination of ruderal plant communities (Sisymbrietalia, nopordetalia) in the western part of Slovakia. Plant Ecology, 48, 267–275. https://doi.org/10.1007/BF00055270
  20. O’Donnell, M. S., & Ignizio, D. A. (2012). Bioclimatic predictors for supporting ecological applications in the conterminous United States. US Geological Survey Data Series, 691(10), 1–10.
  21. Oxelman, B. (1996). RAPD patterns, nrDNA ITS sequences and morphologi-cal patterns in Silene section Sedoideae (Caryophyllaceae). Plant Systematics and Evolution, 201, 93–116.
  22. Oxelman, B., & Lidén, M. (1995). Generic boundaries in the tribe Sileneae (Caryophyllaceae) as inferred from nuclear rDNA sequences. Taxon, 44, 525–542. https://doi.org/10.2307/1223498
  23. Peel, M. C., Finlayson, B. L., & McMahon, T. A. (2007). Updated world map of the Köppen-Geiger climate classification. Hydrology and Earth System Sciences, 11, 1633–1644.
  24. Peppe, D., Royer, D., Cariglino, B., Oliver, S., Newman, S., Leight, E., Enikolopov, G., Fernandez Burgos, M., Herrera, F., & Adams, J. (2011). Sensitivity of leaf size and shape to climate global patterns and paleoclimatic applications. New Phytologist, 190, 724–739. https://doi.org/10.1111/j.1469-8137.2010.03615.x
  25. Posada, D., & Crandall, K. A. (1998). Modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817–818.
  26. Rautenberg, A., Sloan, D. B., Alden, V., & Oxelman, B. (2012). Phylogenetic relationships of Silene multinervia and Silene section Conoimorpha (Caryophyllaceae). Systematic Botany, 37(1), 226–237. https://doi.org/10.1600/036364412X616792
  27. Rice, W. R. (1989). Analyzing tables of statistical tests. Evolution, 43, 223–225.
  28. Ronquist, F., & Huelsenbeck, J. P. (2003). MrBayes 3 Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572–574. https://doi.org/10.1093/bioinformatics/btg180
  29. Royer, D. L., Wilf, P., Janesko, D. A., Kowalski, E. A., & Dilcher, D. L. (2005). Correlations of climate and plant ecology to leaf size and shape: potential proxies for the fossil record. American Journal of Botany, 92(7), 1141–1151. https://doi.org/10.3732/ajb.92.7.1141
  30. Safaei, M., Sheidai, M., Alijanpour, B., & Noormohammadi, Z. (2016). Species delimitation and genetic diversity analysis in Salvia with the use of ISSR molecular markers. Acta Botanica Croatica, 75(1), 45–52. https://doi.org/10.1515/botcro-2016-0005
  31. Safaeishakib, M., Assadi, M., Mehregan, I., & Ghazanfar, S. (2020). Phylogenetic study of Silene sections Auriculatae, Spergulifoliae, Ampullatae, and Lasiocalycinae in Iran. Phytotaxa, 472(2), 169–183. https://doi.org/10.11646/phytotaxa.472.2.7
  32. Safaeishakib, M., Assadi, M., Mehregan, I., & Ghazanfar, S. (2023). Cryptic Molecular-Geographical Divergence among Silene aucheriana Populations Report by ISSR Data. Biologia, 78(4). https://doi.org/10.1007/s11756-023-01390-x
  33. Sheidai, M., Gholipour, A., & Noormohammadi, Z. (2010). Species relationship in the genus Silene L. Section Auriculatae (Caryophyllaceae) Based on morphology and RAPD analysis. Acta Biologica Szegediensis, 54(1), 25–31.
  34. Swofford, D. L. (2002). PAUP*: Phylogenetic analysis using parsimony (and other methods) 4.0b10. Sunderland, Massachusetts. Sinauer Associates.
  35. Ter Braak, C. (1986). Canonical correspondence analysis: a new eigenvector technique for multivariate direct gradient analysis. Journal of Ecology, 67, 1167–79. https://doi.org/10.2307/1938672
  36. Thorpe, R. (1987). Geographic variation: a synthesis of cause, data, pattern and congruence in relation to subspecies, multivariate analysis and phylogenesis. Italian Journal of Zoology, 54, 3–11.
  37. Townsend, C., Melzheimer, V., Kandemir, A., Ghazanfar, S. A., & Haloob, A. (2016). Caryophyllaceae. In S. A. Ghazanfar, & J. R. Edmondson (Eds.), Flora of Iraq, vol. 5(2) (pp. 6–123). Ministry of Agriculture of the Republic of Iraq.
  38. Verheijen, L. M., Brovkin, V., Aerts, R., & Bönisch, G. (2013). Impacts of trait variation through observed trait climate relationships on performance of an earth system model: a conceptual analysis. Biogeosciences, 10, 5497–5515. https://doi.org/10.5194/bg-10-5497-2013
  39. Živković, B., Radović, J., Sokolović, D., Šiler, B., Banjanac, T. & Štrbanović, R. (2012). Assessment of genetic diversity among alfalfa (Medicago sativa L.) genotypes by morphometry, seed storage proteins and RAPD analysis. Industrial Crops and Products, 40, 285–291. https://doi.org/10.1016/j.indcrop.2012.03.027
DOI: https://doi.org/10.2478/hacq-2023-0001 | Journal eISSN: 1854-9829 | Journal ISSN: 1581-4661
Language: English
Page range: 151 - 163
Submitted on: Jun 12, 2022
Accepted on: Jun 26, 2023
Published on: Feb 16, 2024
Published by: Slovenian Academy of Sciences and Arts
In partnership with: Paradigm Publishing Services
Publication frequency: 2 issues per year

© 2024 Masoumeh Safaeishakib, Mostafa Assadi, Shahina A. Ghazanfar, Iraj Mehregan, published by Slovenian Academy of Sciences and Arts
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.