References
- A
barenkov , K., Zirk , A., Piirmann , T., Pöhönen , R., Ivanov , F., Nilsson , R.H., Kõljalg , U., 2023. UNITE general FASTA release for eukaryotes. Version 18.07.2023. UNITE Community. https://doi.org/10.15156/BIO/2938069 - A
guiar , M., Conway , A.J., Bell , J.K., Stewart , K.J., 2023. Agroecosystem edge effects on vegetation, soil properties, and the soil microbial community in the Canadian prairie. Plos ONE, 18 (4): e0283832. https://doi.org/10.1371/journal.pone.0283832 - A
hmadpour , S.A., Mehrabi -Koushki , M., Farokhinejad , R., Asgari , B., 2022. New species of the family Didymellaceae in Iran. Mycological Progress, 21 (2): 28. https://doi.org/10.1007/s11557-022-01800-5 - A
lvidrez -Villarreal , R., Hernández -Castillo , F.D., Garcia -Martínez , O., Mendoza -Villarreal , R., Rodríguez -Herrera , R., Aguilar , C.N., 2012. Isolation and pathogenicity of fungi associated to ambrosia borer (Euplatypus segnis) found injuring pecan (Carya illinoen- sis) wood. Agricultural Sciences, 3: 405–416. DOI:10.4236/as.2012.33048 - A
ndersen , K.S., Kirkegaard , R.H., Karst , S.M., Albertsen , M., 2018. ampvis2: an R package to analyse and visualize 16S rRNA amplicon data. BioRxiv, 299537. https://doi.org/10.1101/299537 - A
ndrades , M., 2012. Prácticas de edafología y climatología [Soil science and climatology]. 2nd ed. Universidad de la Rioja, Servicio de publicaciones. [cit. 2024-12-03]. https://www.agapea.com/M-Andrades-Rodriguez/Practicas-de-Edafologia-y-Climatologia-9788488713278-i.htm. (In Spanish). - A
nslan , S., Bahram , M., Hiiesalu , I., Tedersoo , L., 2017. PipeCraft: flexible open‐source toolkit for bioinformatics analysis of custom high‐throughput amplicon sequencing data. Molecular Ecology Resources, 17 (6): e234-e240. https://doi.org/10.1111/1755-0998.12692 - B
ennett , A. E., Groten , K., 2022. The costs and benefits of plant–arbuscular mycorrhizal fungal interactions. Annual Review of Plant Biology, 73 (1): 649–672. https://doi.org/10.1146/annurev-arplant-102820-124504 - B
lincoe , K., Harrison , F., Damian , D., 2015. Ecosystems in GitHub and a method for ecosystem identification using reference coupling. In 2015 IEEE/ACM 12th working conference on mining software repositories. Florence, Italy, 16-17 May 2015. Piscataway: IEEE, p. 202–211. DOI: 10.1109/MSR.2015.26 - B
remner , J.M., 1965. Total nitrogen. Methods of soil analysis: part 2 Chemical and microbiological properties. Number 9 in Series Agronomy. Madison: American Society of Agronomy Inc., p. 1149–1178. - C
abrera -Rodríguez , Nava -Reyna , E., Trejo -Calzada , R., García -De la Peña , C., Arreola -Ávila , J.G., Collavino , M.M., Constante -García , V., 2020. Effect of organic and conventional systems used to grow pecan trees on diversity of soil microbiota. Diversity, 12 (11): 436. https://doi.org/10.3390/d12110436 - Casas
, R., 2012. El suelo de cultivo y las condiciones climáticas [Crop soil and climatic conditions]. Madrid: Parainfo. 235 p. (In Spanish). - C
hen , T., Wang , S., Jiang , X., Huang , Y., Mo , M., Yu , Z., 2023. New species of Didymellaceae within aquatic plants from southwestern China. Journal of Fungi, 9 (7): 761. https://doi.org/10.3390/jof9070761 - C
himal -Sánchez , E., Senés -Guerrero , C., Varela , L., Montaño , N.M., García -Sánchez , R., Pacheco , A., Montaño -Arias , S.A., Camargo -Ricalde , S.L., 2020. Septoglomus mexicanum, a new species of arbuscular mycorrhizal fungi from semiarid regions in Mexico. Mycologia, 112 (1): 121–132. https://doi.org/10.1080/00275514.2019.1671147 - C
olombo , R.P., Recchi , M., Silvani , V.A., Pérgola , M., Martínez , A., Godeas , A.M., 2018. Detection of arbuscular mycorrhizal fungi associated with pecan (Carya illinoinensis) trees by molecular and morphological approaches. MycoKeys, 42: 73–88. https://doi.org/10.3897/mycokeys.42.26118 - D
elgado -Baquerizo , Maestre , F.T., Reich , P.B., Jeffries , T.C., Gaitan , J.J., Encinar , D., Singh , B.K., 2016. Microbial diversity drives multifunctionality in terrestrial ecosystems. Nature Communications, 7 (1): 10541. https://doi.org/10.1038/ncomms10541 - E
slaminejad , P., Heydari , M., Kakhki , F.V., Mirab -Balou , M., Omidipour , R., Muñoz -Rojas , M., Lucas -Borja , M.E., 2020. Plant species and season influence soil physicochemical properties and microbial function in a semi-arid woodland ecosystem. Plant and Soil, 456: 43–59. https://doi.org/10.1007/s11104-020-04691-1 - G
inestet , C., 2011. ggplot2: elegant graphics for data analysis. Journal of the Royal Statistical Society Series A: Statistics in Society, 174 (1): 245–246. https://doi.org/10.1111/j.1467-985X.2010.00676_9.x - G
kisakis , V., Volakakis , N., Kollaros , D., Bàrberi , P., Kabourakis , E.M., 2016. Soil arthropod community in the olive agroecosystem: determined by environment and farming practices in different management systems and agroecological zones. Agriculture, Ecosystems and Environment, 218: 178–189. https://doi.org/10.1016/j.agee.2015.11.026 - G
ryzenhout , M., Khooa , B., Landman , L., 2016. First report of Fusarium boothii from pecan (Carya illinoinensis) and camel thorn (Vachellia erioloba) trees in South Africa. South African Journal of Botany, 105: 158–162. - G
uerrero -Galán , C., Calvo -Polanco , M., Zimmermann , S.D., 2019. Ectomycorrhizal symbiosis helps plants to challenge salt stress conditions. Mycorrhiza, 29: 291– 301. https://doi.org/10.1007/s00572-019-00894-2 - H
uang , W.,van Bodegom , P. M., Declerck , S., Heinonsalo , J., Cosme , M., Viskari , T., Soudzilovskaia , N. A., 2022. Mycelium chemistry differs markedly between ectomycorrhizal and arbuscular mycorrhizal fungi. Communications Biology, 5 (1): 398. https://doi.org/10.1038/s42003-022-03341-9 - H
udson , O., Buchholz , M., Doyle , V., Sundue , M.A., 2019. Multilocus phylogeny of Acrospermaceae: new epibiotic species and placement of Gonatophragmium, Pseudovirgaria, and Phaeodactylium anamorphs. Mycologia, 111 (6): 1041–1055. https://doi.org/10.1080/00275514.2019.1668905 - INIFAP (I
nstituto Nacional de Investigaciones Forestales , Agrícolas y Pecuarias ), 2002. Tecnología de producción en nogal pecanero [Pecan nut production technology]. Ciudad de México: CELALA-CIRNOC-INI FAP. (In Spanish). - J
ohnson , B.L., Haddad , N.M., 2011. Edge effects, not connectivity, determine the incidence and development of a foliar fungal plant disease. Ecology, 92 (8): 1551–1558. https://doi.org/10.1890/10-1072.1 - K
eirnan , Tan , Y.P., Laurence , M.H., Mertin , A.A., Liew , E.C., Summerell , B.A., Shivas , R.G., 2021. Cryptic diversity found in Didymellaceae from Australian native legumes. MycoKeys, 78: 1–20. DOI: 10.3897/mycokeys.78.60063 - K
reitzman , M., 2020. Perennial agriculture: agronomy and environment in long-lived food systems. PhD thesis. University of British Columbia. 283 p. - L
arsson , E., Campo , E., Carbone , M., 2014. Hygrophorus exiguus, a new species in subgenus Colorati section Olivaceoumbrini, subsection Tephroleuci. Karstenia, 54 (2): 41–48. - L
egeay , M., Doncheva , N.T., Morris , J.H., Jensen , L.J., 2020. Visualize omics data on networks with Omics Visualizer, a Cytoscape App. F1000Research, 9: 157. https://doi.org/10.12688/f1000research.22280.2 - L
uján Soto , R., Martínez -Mena , M., Cuéllar Padilla , M., De Vente , J., 2021. Restoring soil quality of woody agroecosystems in Mediterranean drylands through regenerative agriculture. Agriculture, Ecosystems and Environment, 306: 107191. https://doi.org/10.1016/j.agee.2020.107191 - M
a , Y., Dias , M.C., Freitas , H., 2020. Drought and salinity stress responses and microbe-induced tolerance in plants. Frontiers in Plant Science, 11: 591911. https://doi.org/10.3389/fpls.2020.591911 - M
a , W-Y., Wu , Q.-S.,., Xu , Y.-J., Kuča , K., 2021. Exploring mycorrhizal fungi in walnuts with a focus on physiological roles. Notulae Botanicae Horti Agrobotanici Cluj-Napoca, 49 (2): 12363. https://doi.org/10.15835/nbha49212363 - M
adriz -Valdovinos , Coronado , M.L., Raymundo , T., Gutiérrez , A., Flores , M. S., Esqueda , M. 2022. Pezizales (Ascomycota) associated with pine-oak forest in Yécora, Sonora, Mexico. Acta Botanica Mexicana, 129. https://doi.org/10.21829/abm129.2022.2083 - M
cMurdie , P.J., Holmes , S., 2013. phyloseq: an R package for reproducible interactive analysis and graphics of microbiome census data. PloS ONE, 8 (4): e61217. https://doi.org/10.1371/journal.pone.0061217 - M
edel , R., Castillo , R., Marmolejo , J., Baeza , Y., 2013. Análisis de la familia Pezizaceae (Pezizales: Ascomycota) en México [Analysis of the family Pezizaceae (Pezizales: Ascomycota) in Mexico]. Revista Mexicana de Biodiversidad, 84: S21-S38. https://doi.org/10.7550/rmb.31741. (In Spanish). - M
elo , C., Walker , C., Krüger , C., Borges , P.A., Luna , S., Mendonça , D., Machado , A.C., 2019. Environmental factors driving arbuscular mycorrhizal fungal communities associated with endemic woody plant Picconia azo-rica on native forest of Azores. Annals of Microbiology, 69: 1309–1327. https://doi.org/10.1007/s13213-019-01535-x - N
guyen , N.H., Song , Z., Bates , S.T., Branco , S., Tedersoo , L., Menke , J., Schilling , J.S., Kennedy , P.G., 2016. FUN-Guild: an open annotation tool for parsing fungal community datasets by ecological guild. Fungal Ecology, 20: 241–248. https://doi.org/10.1016/j.funeco.2015.06.006 - O
ksanen , J., Blanchet , F.G., Kindt , R., Legendre , P., Minchin , P.R., O’Hara , R.B., Oksanen , M.J., 2013. Package ‘vegan’. Community ecology package, version 2 (9), p. 1–295. - P
almer , J.M., Lindner , D.L., Volk , T.J., 2008. Ectomycorrhizal characterization of an American chestnut (Castanea dentata)-dominated community in Western Wisconsin. Mycorrhiza, 19: 27–36. https://doi.org/10.1007/s00572-008-0200-7 - P
oletto , T., Muniz , M.F.B., Fantinel , V.S., Harakava , R., Rolim , J.M., 2020. Characterization and pathogenicity of Fusarium oxysporum associated with Carya illinoinensis seedlings. Floresta e Ambiente, 27: e20171089. https://doi.org/10.1590/2179-8087.108917 - P
orensky , L.M., Young , 2013. Edge‐effect interactions in fragmented and patchy landscapes. Conservation Biology, 27 (3): 509–519. - R
ivera -Urbalejo , Vazquez -Sandoval , D., Fernández -Vázquez , J.L., Rosete -Enríquez , M., Cesa -Luna , C., Morales -García , Y.E., Quintero -Hernández , V., 2021. Aportes y dificultades de la metagenómica de suelos y su impacto en la agricultura [Contributions and difficulties of soil metagenomics and its impact on agriculture]. Acta Biológica Colombiana, 26 (3): 449–461. https://doi.org/10.15446/abc.v26n3.85760. (In Spanish). - R
odríguez , M.A., 1996. Prácticas de edafología y climatología [Practice of soil science and climatology]. Universidad de la Rioja. Servicio de publicaciones. 79 p. (In Spanish). - R
udawska , M., Kujawska , M., Leski , T., Janowski , D., Karliński , L., Wilgan , R., 2019. Ectomycorrhizal community structure of the admixture tree species Betula pendula, Carpinus betulus, and Tilia cordata grown in bare-root forest nurseries. Forest Ecology and Management, 437: 113–125. https://doi.org/10.1016/j.foreco.2019.01.009 - S
ánchez -Ledesma J., Garibay -Orijel , R., Guevara -Guerrero , G., Ávila -Rodríguez , V., Arreola -Ávila , J.G., 2023. Macromicetos asociados con Carya illinoinensis en La Comarca Lagunera, México [Macromycetes associated with Carya illinoinensis in La Comarca Lagunera, Mexico]. Revista Mexicana de Biodiversidad, 94: e944074-e944074. https://doi.org/10.22201/ib.20078706e.2023.94.4074. (In Spanish). - S
chmidt , M., 2019. Fragmentation of landscapes: modelling ecosystem services of transition zones. PhD thesis. Universität Potsdam, Potsdam. https://doi.org/10.25932/publishup-44294 - S
harma , S., Singh , P., Chauhan , S., Choudhary , O.P., 2022. Landscape position and slope aspects impacts on soil organic carbon pool and biological indicators of a fragile ecosystem in high-altitude cold arid region. Journal of Soil Science and Plant Nutrition, 22 (2): 2612–2632. https://doi.org/10.1007/s42729-022-00831-x - S
hi , J.W., Lu , L.X., Shi , H.M., Ye , J.R., 2022. Effects of plant growth-promoting rhizobacteria on the growth and soil microbial community of Carya illinoinensis. Current Microbiology, 79 (11: 352. - T
albot , J.M., Bruns , T.D., Smith , D.P., Branco , S., Glassman , S.I., Erlandson , S., Peay , K.G., 2014. Independent roles of ectomycorrhizal and saprotrophic communities in soil organic matter decomposition. Soil Biology and Biochemistry, 57: 282–291. https://doi.org/10.1016/j.soilbio.2012.10.004 - T
edersoo , L., Bahram , M., Põlme , S., Kõljalg , U., Yorou , N.S., Wijesundera , R., Abarenkov , K., 2014. Global diversity and geography of soil fungi. Science, 346 (6213): 1256688. DOI: 10.1126/science.1256688 - T
edersoo , L., Bahram , M., Zobel , M., 2020. How mycorrhizal associations drive plant population and community biology. Science, 367 (6480): eaba1223. DOI: 10.1126/science.aba1223 - V
iglizzo , E.F., Roberto , Z.E., Filippin , M.C., Pordomingo , A.J., 1995. Climate variability and agroecological change in the Central Pampas of Argentina. Agriculture, Ecosystems and Environment, 55 (1): 7–16. https://doi.org/10.1016/0167-8809(95)00608-U - W
alkley , A., Black , I.A., 1934. An examination of the Degtjareff method for determining soil organic matter, and a proposed modification of the chromic acid titration method. Soil Science, 37 (1): 29–38. - W
ei , T., Simko , V.R., 2021. package “corrplot”: Visualization of a Correlation Matrix (Version 0.92). Package Corrplot for R Software. - W
ei , H., He , X., Riccardo , B., Yang , Y., Yuan , Z., 2021. Stagonosporopsis rhizophilae sp. nov. (Didymellaceae, Pleosporales), a new rhizospheric soil fungus associated with Populus deltoides Marsh. Phytotaxa, 491 (1): 23–34. https://doi.org/10.11646/phytotaxa.491.1.3 - W
ickham , H., 2023. dplyr: A grammar of data manipulation. R package version 04.3., p156. - Y
ang , C., Liu , N., Zhang , Y., 2019. Soil aggregates regulate the impact of soil bacterial and fungal communities on soil respiration. Geoderma, 337: 444–452. https://doi.org/10.1016/j.geoderma.2018.10.002 - Y
ang , C., Sun , J., 2020. Soil salinity drives the distribution patterns and ecological functions of fungi in saline-alkali land in the Yellow River Delta, China. Frontiers in Micro-biology, 11: 594284. https://doi.org/10.3389/fmicb.2020.594284 - Z
eng , Q., Lebreton , A., Auer , L., Man , X., Jia , L., Wang , G., Gong , S., Sai , W., Lombard , V., Buée , M., Wu , G., Dai , Y., Yang , Z., Martin , F.M., 2023. Stable functional structure despite high taxonomic variability across fungal communities in soils of old-growth montane forests. Microbiome, 11 (1): 217. https://doi.org/10.1186/s40168-023-01650-7 - Z
hang , C., Yang , C., Cai , F., Ma , T., Wei , L., Jin , M., Wang , Y., Qi , N., 2024. Occurrence and identification of two Nothophoma species causing branch canker and leaf brown spot of walnut in China. Canadian Journal of Plant Pathology, 46: 367–377. https://doi.org/10.1080/07060661.2024.2317897 - Z
hang , K., Zentella , R., Burkey , K.O., Liao , H.L., Tisdale , R.H., 2023. Microbial community dynamics responding to nutrient allocation associated with soybean cultivar ‘Jake’ ozone adaptation. Science of the Total Environment, 864: 161008. https://doi.org/10.1016/j.scitotenv.2022.161008