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Habitat-related specifity of iPBS fingerprint in European populations of Hedera helix L. Cover

Habitat-related specifity of iPBS fingerprint in European populations of Hedera helix L.

Open Access
|May 2019

Abstract

Inter primer binding site (iPBS) polymorphism was investigated for common ivy (Hedera helix, L.) to obtain the knowledge on genetic diversity in this species. Actually, a very limited information exists about application of DNA markers in Hedera helix. Natural and planted European populations of ivy were analysed using an iPBS marker 5′ACCTGGCGTGCCA3′ with a total number of 238 fragments generated. Of these, 86% were polymorphic. There were determined certain attributes of this marker such as the diversity index (DI) and polymorphism information content (PIC). The value of the diversity index was 0.79 and the polymorphic information index was 0.78. The proportion of polymorphisms of the individual amplified loci ranged from 0.32% to 6.98%. Cluster analysis was performed to determine the relationships among the European ivy populations where the distribution in the dendrogram under the habitat specifity was found for the used iPBS marker. We concluded that iPBS was very efficient in analysing the genetic diversity in Hedera helix, L. and that this marker can serve as a suitable tool to find genomically specific fingerprints relevant to the factors influencing the distribution of genetic variation.

DOI: https://doi.org/10.2478/foecol-2019-0005 | Journal eISSN: 1338-7014 | Journal ISSN: 1336-5266
Language: English
Page range: 30 - 36
Submitted on: Sep 12, 2018
Accepted on: Mar 21, 2019
Published on: May 27, 2019
Published by: Slovak Academy of Sciences, Mathematical Institute
In partnership with: Paradigm Publishing Services
Publication frequency: 2 issues per year

© 2019 Jana Žiarovská, Katarína Ražná, Eloy C. Fernandéz, Danka Bošeľová, Matúš Kyseľ, published by Slovak Academy of Sciences, Mathematical Institute
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.