Have a personal or library account? Click to login
Application of HPD Model for Predicting Protein Mutations Cover

Application of HPD Model for Predicting Protein Mutations

By: Stefka Fidanova  
Open Access
|Dec 2013

References

  1. 1. Albert, B., D. Bray, S. A. Jonson, J. Lewi s, M. Raff, K. Robert s, P. Walter. Essential Cell Biology: An Introduction to the Molecular Biology of the Cell. Garland Publishing, Inc., 1998.
  2. 2. Balev, S. Solving the Protein Threading Problem by Lagrangian Relaxation, Algorithms in Bioinformatics. S. Istrail, P. Pevzner, M. Waterman, Eds. - In: Lecture Notes in Computer Sciences. No 3240. Springer, 2004, 182-193.10.1007/978-3-540-30219-3_16
  3. 3. Berger, B., T. Leighton. Protein Folding in the Hydrophobic-Hydrophilic (HP) Model is NP-Complete. - Computational Biology, Vol. 5, 1998, 27-40.10.1089/cmb.1998.5.27
  4. 4. Chandr u, V., A. Dattasharm a, V. S. A. Kuma r. The Algorithm of Folding Protein on Lattice. - Discrete Applied Mathematics, Vol. 127, 2003, No 1, 145-161.10.1016/S0166-218X(02)00381-5
  5. 5. Chotia, C. One Thousand Families for the Molecular Biologist. - Nature Biotechnology, Vol. 22, 2004, 1317-1321.10.1038/nbt1018
  6. 6. Dill, K., K. M. Fiebig, H. S. Chan. Cooperativity in Protein-Folding Kinetics. Nat. Acad. Sci., USA, 1993, 1942-1946.10.1073/pnas.90.5.1942
  7. 7. Fidanova, S. 3D HP Protein Folding Problem Using Ant Algorithm- In: Proc. of Bio PS Int. Conf., Sofia, Bulgaria, III. 2006, 19-26.
  8. 8. Fidanova, S. HPD Model for Protein Structure Simulation. - In: Proc. of 5th International Conference Computer Science’2009, Sofia, Bulgaria, 2010, 2006, 336-341. ISBN 978-954-438-853-9.
  9. 9. Heun, V. Approximate Protein Folding in the HP Side Chain Model on Extended Cubic Lattices. - Discrete Applied Mathematics, Vol. 127, 2003, No 1, 63-177.10.1016/S0166-218X(02)00382-7
  10. 10. Hoque, T., M. Chetty, A. Sattar. Extended HP Model for Protein Structure Prediction. - Computational Biology, Vol. 16, 2009, No 1, 85-103.10.1089/cmb.2008.0082
  11. 11. Krasnogor, N., D. Pelt a, P. M. Lope z, P. Mocciola, P. de la Cana. Genetic Algorithms for the Protein Folding Problem: A Critical View. Engineering of Intelligent Systems. C. Alpaydin, Ed. ICSC Academic Press, 1998, 353-360.
  12. 12. Levit, M. Effect of Proline Residues on Protein Folding. - Molecular Biology, Vol. 145, 1981, 251-263.10.1016/0022-2836(81)90342-9
  13. 13. Liang, F., W. H. Wong. Evolutionary Monte Carlo for Protein Folding Simulations. - Chemical Physics, Vol. 115, 2001, No7, 444-451.10.1063/1.1387478
  14. 14. Lyngso, R. B., C. N. S. Pedersen. Protein Folding in the 2D HP Model. - In: Proc. of 1st Journees Ouverst: Biology, Informatique et Mathematiques, Montpellier, France, 2000.
  15. 15. Pedersen, J. T., J. Moul t. Genetic Algorithm for Protein Structure Prediction. - Curr. Opin. Struct. Biol., Vol. 6, 1996, 227-231.10.1016/S0959-440X(96)80079-0
  16. 16. Khodabakhshi, A. M., J. Manuch, A. Rafiey, A. Gupt a. Stable Structure Approximating Inverse Problem Folding on 2D Hydrophilic-Polar-Cysteine (HPC) Model. - Computational Biology, Vol. 16, 2009, No 1, 19-30. 10.1089/cmb.2008.009619072580
DOI: https://doi.org/10.2478/cait-2013-0056 | Journal eISSN: 1314-4081 | Journal ISSN: 1311-9702
Language: English
Page range: 95 - 103
Published on: Dec 31, 2013
Published by: Bulgarian Academy of Sciences, Institute of Information and Communication Technologies
In partnership with: Paradigm Publishing Services
Publication frequency: 4 issues per year

© 2013 Stefka Fidanova, published by Bulgarian Academy of Sciences, Institute of Information and Communication Technologies
This work is licensed under the Creative Commons License.

Volume 13 (2013): Issue 4 (December 2013)