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From dynamics to links: a sparse reconstruction of the topology of a neural network Cover

From dynamics to links: a sparse reconstruction of the topology of a neural network

Open Access
|May 2019

References

  1. 1. I. Stevenson and K. Kording, How advances in neural recording affect data analysis., Nat Neurosci, vol. 14, pp. 139–142, Feb 2011.10.1038/nn.2731
  2. 2. M. Churchland, B. Yu, M. Sahani, and S. K.V., Techniques for extracting single-trial activity patterns from large-scale neural recordings., Curr Opin Neurobiol, vol. 17, no. 5, pp. 609–618, 2007.10.1016/j.conb.2007.11.001
  3. 3. E. Bullmore and O. Sporns, Complex brain networks: Graph theoretical analysis of structural and functional systems, Nature Reviews Neuroscience, vol. 10, no. 3, pp. 186–198, 2009.10.1038/nrn2575
  4. 4. A. Bolstad, B. D. Van Veen, and R. Nowak, Causal network inference via group sparse regularization, IEEE Transactions on Signal Processing, vol. 59, no. 6, pp. 2628–2641, 2011.10.1109/TSP.2011.2129515
  5. 5. M. Winterhalder, B. Schelter, W. Hesse, K. Schwab, L. Leistritz, D. Klan, R. Bauer, J. Timmer, and W. H., Comparisson of linear signal processing techniques to infer directed interactions in multivariate neural systems., Signal Process., vol. 85, no. 11, pp. 2137–160, 2005.10.1016/j.sigpro.2005.07.011
  6. 6. C. Granger, Investigating causal relations by econometric models and cross-spectral methods., Econometrica, vol. 37, pp. 424–438, 1969.10.2307/1912791
  7. 7. S. Bressler and K. Anil, Granger causality: A well established methodology., NeuroImage, vol. 58, no. 2, pp. 323–29, 2011.10.1016/j.neuroimage.2010.02.059
  8. 8. A. Brovelli, D. Mingzhou, A. Ledberg, Y. Chen, R. Nakamura, and B. S.L., Beta oscillations in a large-scale sensorimotor cortical network: Directional influences revealed by Granger causality, Proceedings of the National Academy of Sciences of the United States of America, vol. 101, no. 26, pp. 9849–9854, 2004.10.1073/pnas.0308538101
  9. 9. S. Kim, D. Putrino, S. Ghosh, and E. Brown, A Granger Causality Measure for Point Process Models of Ensemble Neural Spiking Activity, PLOS Computational Biology, vol. 7, pp. 1–13, 03 2011.10.1371/journal.pcbi.1001110
  10. 10. A. Cadotte, T. DeMarse, P. He, and M. Ding, Causal measures of structure and plasticity in simulated and living neural networks, PLOS ONE, vol. 3, pp. 1–14, 10 2008.10.1371/journal.pone.0003355
  11. 11. R. Vardi, A. Goldental, S. Sardi, A. Sheinin, and I. Kanter, Simultaneous multi-patch-clamp and extracellular-array recordings: Single neuron reflects network activity., Scientific Reports., vol. 6, p. 36228, 2016.10.1038/srep36228
  12. 12. K. Deisseroth, Optogenetics: 10 years of microbial opsins in neuroscience., Nature neuroscience, vol. 18, no. 9, pp. 1213–1225, 2015.10.1038/nn.4091
  13. 13. B. Olshausen and F. D.J., Sparse coding of sensory inputs., Current Opinion in Neurobiology, vol. 14, pp. 481–487, 2004.10.1016/j.conb.2004.07.007
  14. 14. N. Brunel, V. Hakim, P. Isope, J. Nadal, and B. B., Optimal information storage and the distribution of synaptic weights: perceptron versus purkinje cell., Neuron, vol. 43, no. 5, pp. 745–57, 2004.10.1016/S0896-6273(04)00528-8
  15. 15. E. Bullmore and O. Sporns, The economy of brain network organization, Nature Reviews Neuroscience, vol. 13, no. 5, pp. 336–349, 2012.10.1038/nrn321422498897
  16. 16. G. Aletti, M. Moroni, and G. Naldi, A new nonlocal nonlinear diffusion equation for image denoising and data analysis, arXiv: 1707.06396, 2017.
  17. 17. G. Palazzolo, M. Moroni, A. Soloperto, G. Aletti, G. Naldi, M. Vassalli, T. Nieus, and F. Difato, Fast wide-volume functional imaging of engineered in vitro brain tissues, Scientific Reports, vol. 7, no. 1, 2017.10.1038/s41598-017-08979-8556122728819205
  18. 18. E. D’Angelo, T. Nieus, A. Maffei, S. Armano, P. Rossi, V. Taglietti, A. Fontana, and N. G., Theta-frequency bursting and resonance in cerebellar granule cells: Experimental evidence and modeling of a slow k+-dependent mechanism, Journal of Neuroscience, vol. 21, no. 3, pp. 759–770, 2001.10.1523/JNEUROSCI.21-03-00759.2001
  19. 19. T. Nieus, E. Sola, J. Mapelli, E. Saftenku, P. Rossi, and D. E., Ltp regulates burst initiation and frequency at mossy fiber-granule cell synapses of rat cerebellum: experimental observations and theoretical predictions., J Neurophysiol, vol. 95, pp. 686–699, Feb 2006.10.1152/jn.00696.200516207782
  20. 20. M. Garofalo, T. Nieus, P. Massobrio, and M. S., Evaluation of the performance of information theory-based methods and cross-correlation to estimate the functional connectivity in cortical networks., PLoS One, vol. 4, no. 8, p. e6482, 2009.10.1371/journal.pone.0006482271586519652720
  21. 21. A. Maccione, M. Garofalo, T. Nieus, M. Tedesco, L. Berdondini, and S. Martinoia, Multiscale functional connectivity estimation on low-density neuronal cultures recorded by high-density cmos micro electrode arrays., J Neurosci Methods, vol. 207, pp. 161–171, Jun 2012.10.1016/j.jneumeth.2012.04.00222516778
  22. 22. S. Ullo, T. Nieus, D. Sona, A. Maccione, L. Berdondini, and M. V., Functional connectivity estimation over large networks at cellular resolution based on electrophysiological recordings and structural prior., Front Neuroanat, vol. 8, p. 137, 2014.10.3389/fnana.2014.00137423836725477790
  23. 23. S. Song, P. Sjostrom, M. Reigl, S. Nelson, and C. D.B., Highly nonrandom features of synaptic connectivity in local cortical circuits., PLoS Biol, vol. 3, p. e68, Mar 2005.10.1371/journal.pbio.0030068105488015737062
  24. 24. Y. Gong, C. Huang, J. Li, Z. Jin, B. Grewe, Y. Zhang, S. Eismann, and S. M., High-speed recording of neural spikes in awake mice and flies with a fluorescent voltage sensor., Science (New York, N.Y.), vol. 350, pp. 1361–1366, Dec 2015.10.1126/science.aab0810
Language: English
Page range: 2 - 11
Submitted on: Nov 29, 2016
Accepted on: Nov 13, 2017
Published on: May 11, 2019
Published by: Italian Society for Applied and Industrial Mathemathics
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year

© 2019 Giacomo Aletti, Davide Lonardoni, Giovanni Naldi, Thierry Nieus, published by Italian Society for Applied and Industrial Mathemathics
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.