Table 1
Clinical data of the patients and reviewed cases.
| Pat. no. | Sex, age | Deletion size / coordinates | Prenatal | Postnatal | Relative with possibly related clinical phenotype | Ref | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Urinary system | DH | Other anomalies | Amniotic fluid | Urinary system | LBW/Growth delay | Respiratory | Digestive | Cardiovascular | Neurological | Muscular | Bone | Genital | Facial dysmorphism | Other | |||||
| 1. | Fetus# n/a | 1.42 Mb 34,822,465–36,243,365 (hg19) | HN | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 9 |
| 2. | Fetus n/a | 1.48 Mb 34,832,294–36,316,144 (hg19) | Left MCDK | - | - | - | - | - | - | - | - | - | - | - | - | - | - | C | 13 |
| 3. | Fetus# n/a | 1.58 Mb 34,822,465–36,404,104 (hg19) | bDK | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 9 |
| 4. | Fetus n/a | 1.58 Mb 34,822,465–36,404,104 (hg19) | Right MCDK | - | - | - | - | - | - | - | - | - | - | - | - | - | - | C | 13 |
| 5. | Fetus# n/a | 1.59 Mb 34,822,456–36,410,720 (hg19) | bHK | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 14 |
| 6. | Fetus# n/a | 1.74 Mb 31,836,750–33,582,750 (hg17) [34,762,637–36,252,627 (hg19)] | bMDK UTA | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1 |
| 7. | Fetus# 17 weeks | 1.32 Mb 34,851,537–36,168,104(hg19) | UTA | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | Patient B current study |
| 8. | Fetus, male# 18 wks brother of P49 | 1.75 Mb 34,653,178–36,402,867 mat (hg19) | bHK, bHN, UTA (18 wks) MK, HN, UTA (21 wks) | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + C | 15 |
| 9. | Fetus, female§ 19 wks | 1.39 Mb 31,890,483–33,281,801 (hg18) [34,816,370–36,207,688 (hg19)] | bHK (at 19 wks) bhK, MCK (at 25 wks) | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | 16 |
| 10. | Fetus# 22 weeks | 1.57 Mb 34,815,551–36,383,538 (hg19) | bHK (22 weeks) | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 17 |
| 11. | Fetus, male# 22 wk son of P79, brother of P25 | n/a n/a, pat | bHK, bDK, one cyst | - | + | - | - | - | - | - | - | - | - | - | - | - | - | + C | 7 |
| 12. | Fetus# 22 wks | 1.58 Mb 34,822,465–36,404,136 (hg19) | HK, MDK | - | - | - | - | -‘ | - | - | - | - | - | - | - | - | - | - | 18 |
| 13. | Fetus 22 wks | 1.58 Mb 34,822,492–36,404,104 (hg19) | HK, bHN | - | - | - | - | -‘ | - | - | - | - | - | - | - | - | - | - | 18 |
| 14. | Fetus# 23 wks | 1.60 Mb 34,822,465–36,418,529 (hg19) | HK, bDK | - | - | - | - | -‘ | - | - | - | - | - | - | - | - | - | - | 18 |
| 15. | Fetus 23 wks | 1.94 Mb 34,475,679–36,410,720 (hg19) | HK, left MCDK | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 18 |
| 16. | Fetus# 24 weeks | 1.35 Mb 34,817,422–36,168,104 (hg19) | MDK | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | Patient A current study |
| 17. | Fetus 24 wks offspring of P80 | 1.42 Mb 34,822,465–36,244,332 (hg19) | HK, MDK | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + C | 18 |
| 18. | Fetus 24 wks | 1.42 Mb 34,822,465–36,243,365 (hg19) | HK | - | - | PHA | - | - | - | - | - | - | - | - | - | - | - | - | 18 |
| 19. | Fetus 24 wks | 1.49 Mb 34,822,465–36,307,773 (hg19) | left HK, right MCDK | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 18 |
| 20. | Fetus# 24 wks | 1.60 Mb 34,822,465–36,418,529 (hg19) | bMCDK, bilateral cystic adenomatoid malformation | - | + | AHA | - | - | - | - | - | - | - | - | - | - | - | - | 18 |
| 21. | Fetus 25 wks | 1,49 Mb 34,822,465–36,316,144 (hg19) | HK | - | - | PHA | - | - | - | - | - | - | - | - | - | - | - | - | 18 |
| 22. | Fetus 26 wks | 1.58 Mb 34,822,465–36,404,555 (hg19) | HMDK | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 18 |
| 23. | Fetus, male# 32 wks | 1.93 Mb 34,477,479–36,404,104 (hg19) | bHMDK | - | + | PHA | - | - | - | - | - | - | - | - | - | - | - | - | 19 |
| 24. | Fetus# 32 wks | 1.93 Mb 34,477,479–36,404,104 (hg19) | bHMDK | - | - | PHA | - | - | - | - | - | - | - | - | - | - | - | - | 18 |
| 25. | Fetus, female# 34 wks daughter of P79, sister of P11 | n/a n/a, pat | bHK | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | 7 |
| 26. | n/a§ n/a | 1.58 Mb 34,822,465–36,404,555 (hg19) | HK | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | 9 |
| 27. | Male 1 m.o. son of P83 | n/a n/a, mat | - | - | + | OHA | bMCK | + | - | - | - | - | - | - | - | - | - | + C | 7 |
| 28. | Female 4 m.o. | 1.49 Mb 34,822,465–36,311,009 (hg19) | HK | + | + | PHA | - | - | + | + | + | - | - | - | - | - | - | - | 20 |
| 29. | Male 4 m.o. | 1.43 Mb 31,889,297–33,323,037 (hg18) [34,815,184–36,248,924 (hg19)] | MK | - | - | OHA | MK | + | - | - | + | - | - | + | + | - | - | - | 2 |
| 30. | Male 5 m.o. twin of P31 | 1.59 Mb 34,822,465–36,418,529 pat (hg19) | bHK mild renal PCD | + | + | PHA | HMK PCD AF | + | - | - | - | - | - | - | - | - | - | + C | 20 |
| 31. | Male 5 m.o. twin of P30 | 1.59 Mb 34,822,465–36,418,529 pat (hg19) | bHK mild renal PCD | - | - | - | bHMK AF | + | - | - | - | - | - | - | - | - | - | + C | 20 |
| 32. | n/a 7 m.o. | 1.48 Mb 34,822,465, 36,307,773 (hg19) | RPS | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 9 |
| 33. | Male 7 m.o. son of P76 | 1.69 Mb 31,635,490–33,323,002 mat (hg18) [34,611,377–36,248,889 mat (hg19)] | bMK | - | + | - | bMK | + | - | + | - | - | - | + | - | + | + | + C | 4 |
| 34. | Male 9 m.o. son of P85 | 1.60 Mb 34,856,085–36,455,391 mat (hg19) | HK | - | - | PHA | MK | + | - | - | - | - | - | - | - | - | - | + C | 21 |
| 35. | Male 1 y 9 m.o. son of P88 | 1.38 Mb 31,893,783–33,277,865 mat (hg18) [34,819,670–36,203,752 mat (hg19)] | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | + C | 12 |
| 36. | Female 1 y 10 m.o. | 1.38 Mb 31,893,783–33,277,865 (hg18) [34,819,670–36,203,752 (hg19)] | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | 12 |
| 37. | n/a 2 y.o. | 1.58 Mb 34,822,465–36,404,555 (hg19) | MCK | - | - | - | MDK | + | - | - | - | + | - | - | - | - | - | - | 9 |
| 38. | Female 2 y.o. daughter of P84 | n/a n/a, mat | - | - | - | PHA | - | + | - | + | - | + | - | - | + | + | + | + C | 7 |
| 39. | Male 2 yrs 6 m.o. brother of P42 | 1.40 Mb 31,923,035–33,323,544 mat (hg18) [34,848,922–36,249,431 mat (hg19)] | different size kidneys (30 wks) | - | - | - | bHMDK | + | - | - | - | + | - | - | - | - | - | + C | 22 |
| 40. | Male 3.5 y.o. | 1,84 Mb 31,550,027–33,399,810 (hg18) [34,525,914–36,307,186 (hg19)] | CK | - | - | - | - | - | - | - | + | - | - | - | - | - | - | 23 | |
| 41. | Male 3.8 y.o. | 1,50 Mb 31,889,664–33,386,049 (hg18) [34,815,551–36,295,000 (hg19)] | HK | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | 23 |
| 42. | n/a 4 y.o. sibling of P39 | 1.40 Mb n/a pat | HK (33 weeks) | - | - | - | MK (9 mo) | - | - | - | - | + | + | + | - | - | - | + C | 17 |
| 43. | n/a 4 y.o. | 1.70 Mb 34,550,633–36,248,889 pat (hg19) | HK (23 weeks) | - | - | - | MK (6 mo) | - | - | - | - | + | - | - | - | - | - | + C | 17 |
| 44. | Female 4 y.o. twin of P45 | 1.57 Mb 34,815,551–36,383,538 (hg19) | HK | - | - | - | HMCK | - | - | - | - | + | - | - | - | - | - | - | 17 |
| 45. | Female 4 y.o. twin of P44 | 1.57 Mb 34,815,551–36,383,538 (hg19) | HK | - | - | - | HMCK | - | - | - | - | + | - | - | - | - | - | - | 17 |
| 46. | Female 4 y.o. | 1.79 Mb 34,629,683–36,424,950 pat (hg19) | absent left kidney | - | + | PHA | HMDK | + | - | + | - | + | - | - | - | + | - | + C | 24 |
| 47. | Male 4 y.o. | 1.38 Mb 31,893,783–33,277,865 (hg18) [34,819,670–36,203,752 (hg19)] | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | 12 |
| 48. | Male 4 y.o. | 2.07 Mb 31,635,490–33,708,909 (hg18) [34,611,377–36,455,391 (hg19)] | MK | - | - | - | MK /HK | + | - | - | - | + | + | - | + | + | + | - | 4 |
| 49. | Female 5 y.o.◆ sister of P8 | 1.75 Mb 34,653,178–36,402,867 mat (hg19) | - | - | - | - | bDK | - | - | - | - | - | - | - | - | - | - | C | 15 |
| 50. | Male 5 yrs. 6 m.o. | 1.43 Mb 31,889,297–33,323,037 (hg18) [34,815,184–36,248,924 (hg19)] | MDK | - | - | - | MDK AF | + | - | - | - | - | - | + | - | - | - | - | 2 |
| 51. | Male 5 yrs. 8 mo. | 1.88 Mb 34,437,475–36,243,028 (hg19) | bHK (15 wks) bMK (17 wks) | + | - | - | HMK AF | - | + | + | + | - | - | + | - | + | - | - | 25 |
| 52. | Female 6 y.o. sister of P60, daughter of P89 | n/a n/a, mat | - | - | - | - | - | - | - | - | - | + | - | - | - | + | - | + C | 7 |
| 53. | Male 6 y.o. | n/a n/a | - | - | - | - | AG | + | + | - | - | + | + | - | - | - | + | - | 26 |
| 54. | Female 7 y.o. sibling of P34 | 1.40 Mb 31,923,035–33,323,544 mat (hg18) [34,848,922–36,249,431 mat (hg19)] | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | + C | 22 |
| 55. | Male 7 y.o. | n/a n/a | - | - | - | - | One cyst, partial duplicated collecting system | + | + | + | + | + | + | + | - | 7 | |||
| 56. | Male 7 y.o. | 1.38 Mb 31,893,783–33,277,865 (hg18) [34,819,670–36,203,752 (hg19)] | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | 12 |
| 57. | Male 7 yrs 5 mo | 1.80 Mb 34,475,679–36,283,807(hg19) | HN (22 weeks) | - | - | - | - | + | - | - | - | + | - | - | - | + | - | - | Patient C current study |
| 58. | Male 8 y 8 m.o. | n/a n/a | - | - | + | - | - | + | - | - | + | + | - | - | - | + | - | - | 27 |
| 59. | Male 9 y.o. | 1.83 Mb 31,543,857–33,371,626 (hg18) [34,519,744–36,335,380 (hg19)] | HK, MCK, PY, HY | - | - | - | moderate renal failure | - | - | + | - | + | - | - | - | - | - | - | 23 |
| 60. | Female 10 y.o. sister of P52, daughter of P89 | n/a n/a, mat | - | - | - | - | - | + | - | - | - | + | - | - | - | + | - | + C | 7 |
| 61. | Male 10 y.o. | 1.38 Mb 31,893,783–33,277,865 (hg18) [34,819,670–36,203,752 (hg19)] | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | 12 |
| 62. | Male 10 y.o. son of P82 | 1.78 Mb 34,468,470–36,248,889 mat (hg19) | bHMK | - | - | - | LK | - | - | - | - | + | - | - | - | + | - | + C | 21 |
| 63. | Female 12 y.o. | n/a n/a | - | - | + | - | - | + | - | + | - | + | - | - | - | + | + | + | 27 |
| 64. | Female 12 y.o. | 1.73 Mb 31,593,883–33,323,002 (hg18) [34,569,770–36,248,889 (hg19)] | bHMK | - | - | - | MK | - | - | - | - | + | - | - | - | - | - | + | 4 |
| 65. | Male 12 y.o. | 1.38 Mb 31,893,783–33,277,865 (hg18) [34,819,670–36,203,752 (hg19)] | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | 12 |
| 66. | Male 12 y.o. | 1.43 Mb 34,816,255–36,244,358 (hg19) | - | - | - | - | - | - | - | - | - | + | - | - | - | + | - | - | 5 |
| 67. | Female 13 y.o. | 1,43 Mb 31,889,297–33,323,037 (hg18) [34,815,184–36,248,924 (hg19)] | MK | - | - | - | - | + | - | - | - | + | - | - | - | - | - | + | 2 |
| 68. | Female 14 y.o. | n/a n/a | MCK | - | - | PHA | left AG | - | - | - | - | + | - | - | - | - | + | - | 7 |
| 69. | Male 15 y. 8 m.o. | 1.42 Mb n/a | - | - | - | - | bMCK | + | - | - | - | + | - | - | - | + | + | - | 27 |
| 70. | Male 17 y.o. | 1.89 Mb 34,464,879–36,352,140 (hg19) | - | - | - | - | - | + | - | - | + | + | - | + | - | - | + | - | 28 |
| 71. | Female 18 y.o. | 1.42 Mb n/a | - | - | - | - | bMCK | - | - | - | - | - | - | - | - | - | O, D | + | 27 |
| 72. | Female 18 y.o. | 1.50 Mb n/a | - | - | - | - | MCD | - | - | + | - | + | - | - | - | - | - | - | 29 |
| 73. | Female 19 y.o. | 1.38 Mb 31,893,783–33,277,865 (hg18) [34,819,670–36,203,752 (hg19)] | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | 12 |
| 74. | Female 20 y.o. | 1,43 Mb 31,889,297–33,323,037 (hg18) [34,815,184–36,248,924 (hg19)] | - | - | - | - | DK AG | - | - | - | - | + | - | - | - | - | + | - | 2 |
| 75. | Male 20 y.o. | 1.40 Mb n/a | - | - | - | - | UVJO | - | - | + | - | + | - | - | - | - | D, Mg↓ | - | 30 |
| 76. | Female 22 y.o. mother of P33 | 1.69 Mb 31,635,490–33,323,002 (hg18) [34,611,377–36,248,889 (hg19)] | left MCDK | - | - | - | involution of left MCDK | - | - | - | - | - | - | - | - | - | - | + | 4 |
| 77. | Male 22 y.o. | 1.38 Mb 31,893,783–33,277,865 (hg18) [34,819,670–36,203,752 (hg19)] | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | 12 |
| 78. | Female 26 y.o. | 1.58 Mb 34,790,209–36,373,398 (hg19) | MCK | - | - | - | - | - | - | + | - | + | - | - | - | - | D | - | 31 |
| 79. | Male 26 y.o. father of P48, P50 | n/a n/a | - | - | - | - | bHK | + | - | + | - | + | - | + | - | + | O | + C | 7 |
| 80. | Female 28 y.o. mother of P67 | 1.42 Mb 34,822,465–36,244,332 (hg19) | HK | - | - | - | bMCK | - | - | - | - | - | - | - | - | - | - | + C | 18 |
| 81. | Female 28 y.o. | 1.80 Mb n/a | - | - | - | - | bMCK, AF | + | - | + | - | + | - | - | - | - | - | + | 27 |
| 82. | Female 29 y.o. mother of P24 | 1.78 Mb 34,468,470–36,248,889 (hg19) | bHMK | - | - | - | one cyst | - | - | - | - | + | - | - | - | + | - | + C | 21 |
| 83. | Female 30 y.o. mother of P56 | n/a n/a | - | - | - | - | - | - | - | - | - | + | - | - | - | - | D | + C | 7 |
| 84. | Female 32 y.o. mother of P46 | n/a n/a | - | - | - | - | bHY, bNP | - | - | + | - | + | - | - | - | - | - | + | 7 |
| 85. | Female 32 y.o. mother of P14 | 1.59 Mb 34,856,085–36,455,391 (hg19) | - | - | - | PHA | bMK | - | - | + | - | - | - | - | - | - | O, D | + C | 21 |
| 86. | Female 35 y.o. | 1.58 Mb 34,822,465–36,404,104 (hg19) | - | - | - | - | MCK | - | - | + | - | - | - | - | - | + | + | + C | 32 |
| 87. | Female 36 y.o. | 1.58 Mb 34,790,209–36,373,398 (hg19) | - | - | - | - | MCK kidney failure | - | - | + | - | + | - | - | - | + | D | - | 31 |
| 88. | Female 37 y.o. mother of P87 | 1.38 Mb 31,893,783–33,277,865 (hg18) [34,819,670–36,203,752 (hg19)] | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | 12 |
| 89. | Female 38 y.o. mother of P53, P54 | n/a n/a | - | - | - | - | HY | - | - | - | - | + | - | - | - | - | - | + C | 7 |
| 90. | Male 43 y.o. | n/a n/a | - | - | - | - | HN, UPJO | - | - | + | + | + | - | + | - | - | + Mg↓ | - | 33 |
| 91. | Female 45 y.o. | n/a n/a | - | - | - | - | a/hypoplasia, AF | - | - | - | + | - | - | + | + | - | O, D | - | 27 |
| 92. | Male 62 y.o. | 1,41 Mb 34,815,551–36,223,325 (hg19) | - | - | - | - | bMCK | - | - | - | + | + | - | + | - | - | Mg↓, D | + | 34 |
| TOTAL | 1.32–2.07 Mb Smallest deleted region: 34,851,537–36,168,104 (hg19) | 56/92 (60.9%) | 4/92 (4.3%) | 12/92 (13.0%) | 14/92 (15.2%) | 32/75 (42.7%) | 23/75 (30.7%) | 4/75 (5.3%) | 18/75 (24%) | 8/75 (10.7%) | 49/75 (65.3%) | 3/75 (4%) | 11/75 (14.7%) | 4/75 (5.3%) | 18/75 (24%) | 21/75 (28%) | 34/75 (45.3%) C: 28/75 (37.3%) | ||
AF – affected renal function; AG – agenesia; AHA – anhydramnios; b – bilateral; C – genetically confirmed; D – diabetes; DD – developmental delay; DF – dysmorphic features; DH – diaphragmatic hernia; DK - dysplastic kidney; DM – diabetes mellitus; HK – hyperechogenic kidney; HMK – hyperechogenic multicystic kidney; HMDK – hyperechogenic multicystic dysplastic kidney; HMK – hyperechogenic multicystic kidney; HN – hydronephrosis; HY – renal hypoplasia; ID – intellectual disability; LBW – low birth weight; LK – lobulated kidney; LOFC – low occipitofrontal circumference; MCK – multicystic kidney; MDK - multicystic dysplastic kidney; NP – nephropathy; NT - nuchal fold thickness; O – ocular anomalies; OHA – oligohydramnios; PCD – pelvicalyceal dilatation; PD – pelvic dilatation; PHA – polyhydramnios; PY – pyelectasis; RPS – renal pelvis separation; UPJO – ureteropelvic junction obstruction; UTA – urinary tract anomalies; UVJO - ureterovesical junction obstruction;

Figure 1
Graphical representation of the reported and reviewed deletions in UCSC browser. Patient ID is indicated according to Table 1. The arrows point the patients described in the current study.