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Simultaneously both expression of LMP-1 and methylation of E-cadherin: Molecular biomarker in stage IV of nasopharyngeal carcinoma patients Cover

Simultaneously both expression of LMP-1 and methylation of E-cadherin: Molecular biomarker in stage IV of nasopharyngeal carcinoma patients

By: TD Lao,  PK Truong,  HH Thieu,  DH Nguyen,  MT Nguyen and  TAH Le  
Open Access
|Jul 2021

Figures & Tables

Figure 1

The mean Ct value and percentage of GAPDH, LMP-1 and E-cadherin in the case and control groups. Each black dot indicated the Ct value of GAPDH, LMP-1 in each sample. Each bar indicated the positive percentage of GAPDH, LMP-1 and E-cadherin in case and control groups.
The mean Ct value and percentage of GAPDH, LMP-1 and E-cadherin in the case and control groups. Each black dot indicated the Ct value of GAPDH, LMP-1 in each sample. Each bar indicated the positive percentage of GAPDH, LMP-1 and E-cadherin in case and control groups.

Figure 2

(A) The schematic diagram represented the E-cadherin gene promoter and its CpG island. MF: methylated forward primer; MR: methylated reverse primer; UF: unmethylated forward primer; UR: unmethylated reverse primer; MP: amplified methylated product by methylated primers; UP: amplified unmethylated product by unmethylated primers. Numbers indicated the position of nucleotide. (B) Methylated promoter of the E-cadherin gene was analyzed on some clinical samples by MSP. (The MSP product was 205/211 bps in length. Lanes 1, 2 and 3: NPC biopsy samples; lanes 4, 5 and 6: healthy samples; lane (–): negative control; MW: 100 bps ladder; M: methylated; U: unmethylated.
(A) The schematic diagram represented the E-cadherin gene promoter and its CpG island. MF: methylated forward primer; MR: methylated reverse primer; UF: unmethylated forward primer; UR: unmethylated reverse primer; MP: amplified methylated product by methylated primers; UP: amplified unmethylated product by unmethylated primers. Numbers indicated the position of nucleotide. (B) Methylated promoter of the E-cadherin gene was analyzed on some clinical samples by MSP. (The MSP product was 205/211 bps in length. Lanes 1, 2 and 3: NPC biopsy samples; lanes 4, 5 and 6: healthy samples; lane (–): negative control; MW: 100 bps ladder; M: methylated; U: unmethylated.

Figure 3

Sequencing profile of (A) methylated and (B) unmethylated of the E-cadherin gene promoter. (1) DNA sequence was without bisulfite modification; (2) DNA sequence was bisulfite-modified; (3) amplified sequencing DNA by forward primer; (4) amplified sequencing DNA by reversed primer; square symbols: methylated cytosine; triangle symbols: unmethylated cytosine.
Sequencing profile of (A) methylated and (B) unmethylated of the E-cadherin gene promoter. (1) DNA sequence was without bisulfite modification; (2) DNA sequence was bisulfite-modified; (3) amplified sequencing DNA by forward primer; (4) amplified sequencing DNA by reversed primer; square symbols: methylated cytosine; triangle symbols: unmethylated cytosine.

Figure 4

Summary of LMP-1 expression and methylation of the E-cadherin gene in 45 stage IV NCP samples. Filled box: positive, open box: negative.
Summary of LMP-1 expression and methylation of the E-cadherin gene in 45 stage IV NCP samples. Filled box: positive, open box: negative.

Association between the positive index and clinicopathological parameters_

LMP-1, E-Cadherin
PI = 0, n (%)PI = 0.5, n (%)PI = 1.0, n (%)
Gender:
males14 (15.06)11 (11.83)43 (46.24)
females1 (1.08)6 (6.45)18 (19.35)
p Value0.14
Age (years):
<200 (0.00)0 (0.00)1 (1.08)
20 to 403 (3.23)5 (5.38)9 (9.68)
40 to 606 (6.45)6 (6.45)31 (33.33)
60 to 805 (5.38)6 (6.45)20 (21.51)
>801 (1.08)0 (0.00)0 (0.00)
p Value0.42
Histological typea:
type 10 (0.00)1 (1.08)3 (3.23)
type 27 (7.53)5 (5.38)14 (15.05)
type 38 (8.60)11 (11.83)44 (47.31)
p Value0.42
Stage:
I0 (0.00)0 (0.00)0 (0.00)
II4 (4.30)10 (10.75)19 (20.43)
III5 (5.38)3 (3.23)7 (7.53)
IV6 (6.45)4 (4.30)35 (37.63)
p Value0.04

The primer sequences used_

For evaluation of LMP-1 expressionFor evaluation of LMP-1 expression
Primers [Refs.]Sequences (5’>3’)
LMP-1-F [18]CAG TCA GGC AAG CCT ATG A
LMP-1-R [18]CTG GTT CCG GTG GAG ATG A
GAPDH-F [19]TGC CTC CTG CAC CAC CAA CT
GAPDH-R [19]CGC CTG CTT CAC CAC CTT C

Association between the expression of LMP-1, methylation of E-cadherin and clinicopathological parameters_

LMP-1E-Cadherin
Positive, n (%)Negative, n (%)Methylated, n (%)Unmethylated, n (%)
Gender:
males51 (54.83)17 (18.28)46 (49.46)22 (23.66)
females20 (21.51)5 (5.38)22 (23.66)3 (3.23)
p Value0.060.05
Age (years):<201 (1.08)0 (0.00)1 (1.08)0 (0.00)
20 to 4011 (11.83)6 (6.45)12 (12.90)5 (5.38)
40 to 6036 (38.71)7 (7.53)32 (34.41)11 (11.83)
60 to 8023 (24.73)8 (8.60)23 (24.73)8 (8.60)
>800 (0.00)1 (1.08)0 (0.00)1 (1.08)
p Value0.190.52
Histological typea:
type 13 (3.23)1 (0.00)4 (4.30)0 (0.00)
type 217 (18.28)9 (9.68)16 (17.20)10 (10.75)
type 351 (54.83)12 (12.90)48 (51.61)15 (16.13)
p Value0.290.16
Stage:
I0 (0.00)0 (0.00)0 (0.00)0 (0.00)
II26 (27.96)7 (7.53)22 (23.66)11 (11.83)
III8 (8.60)7 (7.53)9 (9.68)6 (6.45)
IV37 (39.78)8 (8.60)37 (39.78)8 (8.60)
p Value0.070.14

Characteristics of enrolled clinical nasopharyngeal carcinoma NPC samples_

n = 93n (%)
Gender:
males68 (73.12)
females25 (26.88)
Age (years:
<201 (1.08)
20 to 4017 (18.28)
40 to 6043 (46.23)
60 to 8031 (33.33)
>801 (1.08)
Histological typea:
type 14 (4.30)
type 226 (27.96)
type 363 (67.74)
Stage:
I0 (0.00)
II33 (35.48)
III15 (16.13)
IV45 (48.39)

Statistical analysis of association between LMP-1 expression and methylation of E-cadherin in nasopharyngeal carcinoma samples_

LMP-1 Expression
Positive, n (%)Negative, n (%)p Value
E-cadherin methylation:
positive, n (%)61 (65.59)7 (7.53)<0.0001
negative, n (%)10 (10.75)15 (16.13)
Language: English
Page range: 57 - 66
Published on: Jul 27, 2021
In partnership with: Paradigm Publishing Services
Publication frequency: 2 issues per year

© 2021 TD Lao, PK Truong, HH Thieu, DH Nguyen, MT Nguyen, TAH Le, published by Macedonian Academy of Sciences and Arts
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.