[1]. D.E. Warschawski, A.A. Arnold, M. Beaugrand, A. Gravel, E. Chartrand, I. Marcotte, Choosing membrane mimetics for NMR structural studies of transmembrane proteins, Biochimica et Biophysica Acta - Biomembranes 1808 (2011) 1957-1974. DOI: 10.1016/j.bbamem.2011.03.016
[2]. M. Eeman, M. Deleu, From biological membranes to biomimetic model membranes, Biotechnology, Agronomy, Society and Environment 14 (2010) 719-736 (https://popups.uliege.be/1780-4507/index.php?id=17134&file=1&pid=6568)
[3]. N. Kucerka, M.P. Nieh, J. Katsaras, Fluid phase lipid areas and bilayer thicknesses of commonly used phosphatidylcholines as a function of temperature, Biochimica et Biophysica Acta 1808 (2011) 2761–2771. DOI: 10.1016/j.bbamem.2011.07.022
[4]. T.M. Ferreira, F. Coreta-Gomes, O.H.S. Ollila, M.J. Moreno, W.L.C. Vaz, D. Topgaard, Cholesterol and POPC segmental order parameters in lipid membranes: solid state 1H–13C NMR and MD simulation studies, Physical Chemistry and Chemical Physics 15 (2013) 1976-1989. DOI: 10.1039/C2CP42738A
[5]. R.C. Oliver, J. Lipfert, D.A. Fox, R.H. Lo, S. Doniach, L. Columbus, Dependence of micelle size and shape on detergent alkyl chain length and head group, PLOS One 8 (2013) e62488. DOI: 10.1371/journal.pone.0062488
[6]. P. Lague, B. Roux, R.W. Pastor, Molecular dynamics simulations of the influenza hemagglutinin fusion peptide in micelles and bilayers: conformational analysis of peptide and lipids, Journal of Molecular Biology 354 (2005) 1129-1141. DOI: 10.1016/j.jmb.2005.10.038
[7]. H. Saito, T. Morishita, T. Mizukami, K. Nishiyama, K. Kawaguchi, H. Nagao, Molecular dynamics study of binary POPC bilayers: molecular condensing effects on membrane structure and dynamics, Journal of Physics Conference Series 1136 (2018) 012022. DOI: 10.1088/1742-6596/1136/1/012022
[8]. S. Faramarzi, B. Bonnett, C.A. Scaggs, A. Hoffmaster, D. Grodi, E. Harvey, B. Mertz, Molecular dynamics simulations as a tool for accurate determination of surfactant micelle properties, Langmuir 33 (2017) 9934-9943. DOI: 10.1021/acs.langmuir.7b02666
[9]. J.L. Lorieau, J.M. Louis, A. Bax, The complete influenza hemagglutinin fusion domain adopts a tight helical hairpin arrangement at the lipid:water interface, Proceedings of the National Academy of Sciences USA 107 (2010) 11341-11346. DOI: 10.1073/pnas.1006142107
[10]. M. Adélaïde, E. Salnikov, F. Ramos-Martín, C. Aisenbrey, C. Sarazin, B. Bechinger, N. D'Amelio, The mechanism of action of SAAP-148 antimicrobial peptide as studied with NMR and molecular dynamics simulation, Pharmaceutics 15 (2023) 761. DOI:10.3390/pharmaceutics15030761
[11]. L. Zhao, Z. Cao, Y. Bian, G. Hu, J. Wang, Y. Zhou, Molecular Dynamics Simulations of Human Antimicrobial Peptide LL-37 in Model POPC and POPG Lipid Bilayers, International Journal of Molecular Sciences 19 (2018) 1186. DOI: 10.3390/ijms19041186
[12]. A. Isvoran, P. Nedellec, V. Beswick, A. Sanson, Study of the electrostatic interactions between peptides and lipids at the membranes interface by molecular dynamics simulation, Revue Roumaine de Chimie 51 (2006) 1019-1024 (https://revroum.lew.ro/wp-content/uploads/2006/RRC_10_2006/sumar.pdf)
[14]. S. Ghosh, G. Pandit, S. Debnath, S. Chatterjee, P. Satpati, Effect of monovalent salt concentration and peptide secondary structure in peptide-micelle binding, RSC Advances, 11 (2021) 36836. DOI: 10.1039/D1RA06772A
[16]. A. Isvoran, D. Craciun, A. Ciorsac, N. Perrot, V. Beswick, P. Nedellec, A. Sanson, N. Jamin, A bioinformatics study concerning structural and functional properties of human caveolin proteins, Journal of the Serbian Chemical Society 79 (2014) 133-150. DOI: 10.2298/JSC130716100I
[17]. A.W. Cohen, R. Hnasko, W. Schubert, M.P. Lisanti, Role of caveolae and caveolins in health and disease, Physiological Reviews 84 (2004) 1341-1379. DOI: 10.1152/physrev.00046.2003
[18]. H. Li, V. Papadopoulos, Peripheral-type benzodiazepine receptor function in cholesterol transport. Identification of a putative cholesterol recognition/interaction amino acid sequence and consensus pattern, Endocrinology 139 (1998) 4991-4997. DOI: 10.1210/endo.139.12.6390
[20]. C. Le Lan, J. Gallay, M. Vincent, J.M. Neumann, B. de Foresta, N. Jamin, Structural and dynamic properties of juxta-membrane segments of caveolin-1 and caveolin-2 at the membrane interface, European Biophysical Journal 39 (2010) 307-325. DOI: 10.1007/s00249-009-0548-4
[21]. J. Lipfert, L. Columbus, V. B. Chu, S.A. Lesley, S. Doniach, Size and shape of detergent micelles determined by small-angle X-ray scattering, Journal of Physical Chemistry B 111 (2007) 12427-12438. DOI: 10.1021/jp073016l
[22]. D.P. Tieleman, D. van der Spoel, H.J.C. Berendsen, Molecular dynamics simulations of dodecylphosphocholine micelles at three different aggregate sizes: micellar structure and chain relaxation, Journal of Physical Chemistry B 104 (2000) 6380-6388. DOI: 10.1021/jp001268f
[23]. S. Abel, F. Y. Dupradeau, M. Marchi, Molecular dynamics simulations of a characteristic DPC micelle in water, Journal of Chemical Theory and Computation 8 (2012) 4610-4623. DOI: 10.1021/ct3003207
[26]. J. Seelig, Deuterium magnetic resonance: theory and application to lipid membranes, Quarterly Reviews of Biophysics10 (1977) 353-418. DOI: 10.1017/s0033583500002948
[27]. B.R. Brooks, C.L. Brooks, A.D. Mackerell Jr., L. Nilsson, R.J. Petrella, B. Roux, Y. Won, G. Archontis, C. Bartels, S. Boresch, A. Caflisch, L. Caves, Q. Cui, A.R. Dinner, M. Feig, S. Fischer, J. Gao, M. Hodoscek, W. Im, K. Kuczera, T. Lazaridis, J. Ma, V. Ovchinnikov, E. Paci, R.W. Pastor, C.B. Post, J.Z. Pu, M. Schaefer, B. Tidor, R.M. Venable, H.L. Woodcock, X. Wu, W. Yang, D.M. York, M. Karplus, CHARMM: the biomolecular simulation program, Journal of Computational Chemistry 30 (2009) 1545-1614. DOI: 10.1002/jcc.21287
[28]. A.D. MacKerell, D. Bashford, M. Bellott, R.L. Dunbrack, J.D. Evanseck, M.J. Field, S. Fischer, J. Gao, H. Guo, S. Ha, D. Joseph-McCarthy, L. Kuchnir, K. Kuczera, F.T.K. Lau, C. Mattos, S. Michnick, T. Ngo, D.T. Nguyen, B. Prodhom, W. E. Reiher, B. Roux, M. Schlenkrich, J.C. Smith, R. Stote, J. Straub, M. Watanabe, J. Wiorkiewicz-Kuczera, D. Yin, M. Karplus, All-Atom empirical potential for molecular modeling and dynamics studies of proteins, Journal of Physical Chemistry B 102 (1998) 3586-3616. DOI: 10.1021/jp973084f
[29]. J.B. Klauda, R.M. Venable, J.A. Freites, J.W. O'Connor, D.J. Tobias, C. Mondragon-Ramirez, I. Vorobyov, A.D. MacKerell, R.W. Pastor, Update of the CHARMM all-atom additive force field for lipids: validation on six lipid types, Journal of Physical Chemistry B 114 (2010) 7830-7843. DOI: 10.1021/jp101759q
[31]. V. Beswick, A. Isvoran, P. Nedellec, A. Sanson, N. Jamin, Membrane interface composition drives the structure and the tilt of the single transmembrane helix protein PMP1: MD studies, Biophysical Journal 100 (2011) 1660-1667. DOI: 10.1016/j.bpj.2011.02.002
[32]. J.P. Ryckaert, G. Ciccotti, H.J.C. Berendsen, Numerical integration of the Cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes, Journal of Computational Physics 23 (1977) 327-341. DOI: 10.1016/0021-9991(77)90098-5
[33]. J. Lauterwein, C. Bosch, L.R. Brown, K. Wuthrich, Physicochemical studies of the protein-lipid interactions in melittin-containing micelles, Biochimica and Biophysica Acta 556 (1979) 244-264. DOI: 10.1016/0005-2736(79)90046-4
[35]. A.D. MacKerell Jr., M. Feig, C.L. Brooks, Improved treatment of the protein backbone in empirical force fields, Journal of America Chemical Society 126 (2004) 698-699. DOI: 10.1021/ja036959e
[36]. M.R. Saviello, S. Malfi, P. Campiglia, A. Cavalli, P. Grieco, E. Novellino, A. Carotenuto, New insight into the mechanism of action of the temporin antimicrobial peptides, Biochemistry 49 (2010) 1477-1485. DOI: 10.1021/bi902166d
[37]. X. Cheng, S. Jo, H.S. Lee, J.B. Klauda, W. Im, CHARMM-GUI micelle builder for pure/mixed micelle and protein/micelle complex systems, Journal of Chemical Information and Modeling 53 (2013) 2171-2180. DOI: 10.1021/ci4002684
[38]. T. Lazaridis, B. Mallik, Y. Chen, Implicit solvent simulations of DPC micelle formation, Journal of Physical Chemistry B 109 (2005) 15098-15106. DOI: 10.1021/jp0516801
[39]. L. Saiz, M.L. Klein, Influence of highly polyunsaturated lipid acyl chains of biomembranes on the NMR order parameters, Journal of American Chemical Society 123 (2001) 7381-7387. DOI: 10.1021/ja003987d
[40]. M. Wojciechowska, J. Miszkiewicz, J. Trylska, Conformational changes of anoplin, W-MreB1-9, and (KFF)3K peptides near the membranes, International Journal of Molecular Sciences 21 (2020) 9672. DOI: 10.3390/ijms21249672
[41]. S. Khemaissa, A. Walrant, S. Sagan, Tryptophan, more than just an interfacial amino acid in the membrane activity of cationic cell-penetrating and antimicrobial peptides, Quarterly Reviews of Biophysics 55 (2022) E10. DOI: 10.1017/S0033583522000105