Figure 1.
The whole genome sequencing experimental design. A black arrow indicates the paternal contribution, while a red/blue arrow indicates the maternal. S corresponds to sire, D to dam, and O to offspring. Family 1 is represented by red, while Family 2 is represented by blue.
Figure 2.
The similarity between animals in overlapping deletions. S corresponds to sire, D to dam, and O to offspring. Family 1 is represented by red, while Family 2 is represented by blue.
Figure 3.
The similarity between animals in overlapping duplications. S corresponds to sire, D to dam, and O to offspring. Family 1 is represented by red, while Family 2 is represented by blue.
Figure 4.
Copy number variant (CNV) overlap within families. The left black column shows the number of CNV regions (CNVRs) detected in all animals. The green/navy blue/blue/navy red columns give the number of CNVRs found in five/four/three/two animals, and the dots below the columns denote the animals with these variants. The red columns correspond to CNVs unique to each individual. The first three red columns always correspond to the number of de novo CNVRs present in offspring. The horizontal columns are the total CNVRs identified in each animal. The first two graphs (a and b) show deletion regions, and the latter (c and d) refer to duplication regions.
Figure 5.
The frequency of de novo copy number variants (CNVs) to all CNVs.
Figure 6.
Genomic distribution of de novo deletions identified in the six offspring.
Figure 7.
Genomic distribution of de novo duplications identified in the six offspring.