Single Loci and Haplotypes in CAPN1 and CAST Genes are Associated with Growth, Biometrics, and in Vivo Carcass Traits in Santa Inês Sheep
By:
References
- Aalia M., Moradi-Shahrbabak H., Moradi-Shahrbabak M., Sadeghi M., Yousefi A.R. (2017) Association of the calpastatin genotypes, haplotypes, and SNPs with meat quality and fatty acid composition in two Iranian fat- and thin-tailed sheep breeds. Small Rumin. Res., 149: 40–51.
- Armstrong E., Ciappesoni G., Iriarte W., Da Silva C., Macedo F., Navajas E.A., Brito G., San Julián R., Gimeno D., Postiglioni A. (2018). Novel genetic polymorphisms associated with carcass traits in grazing Texel sheep. Meat Sci., 145: 202–808.
- Barendse W. (2011). Haplotype analysis improved evidence for candidate genes for intramuscular fat percentage from a genome wide association study of cattle. PLoS ONE, 6(12): e29601.
- Barrett J., Fry B., Maller J., Daly M. (2005). Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics, 21: 263–265.
- Byun S.O., Zhou H., Forrest R.H.J., Frampton C.M., Hickford J.G.H. (2008). Association of the ovine calpastatin gene with birth weight and growth rate to weaning. Anim. Genet., 39: 572–573.
- Calvo J.F., Iguácel L.P., Kirinus J.K., Serrano M., Ripoll G., Casasús I., Joy M., Pérez-Velasco L., Sarto P., Albertí P., Blanco M. (2014). A new single nucleotide polymorphism in the calpastatin (CAST) gene associated with beef tenderness. Meat Sci., 96: 775–782.
- Cheong H.S., Yoon D.H., Park B.L., Kim L.H., Bae J.S., Namgoong S., Lee H.W., Han C.S., Kim J.O., Cheong I.C., Shin H.D. (2008). A single nucleotide polymorphism in CAPN1 associated with marbling score in Korean cattle. BMC Genet., 9: 33.
- Chung H., Davis M. (2012). PCR-RFLP of the ovine Calpastatin gene and its association with growth. Asian J. Anim. Vet. Adv., 7: 641–652.
- Dagong M.I.A., Sumantri C., Noor R.R., Herman R., Yamin M. (2016). Growth characteristic of Indonesian Thin Tail sheep (TTS) based on calpastatin (CAST) gene genotype variation. Adv. Environ. Biol., 10: 27–31.
- Dedieu S., Dourdin N., Dargelos E., Poussard S., Veschambre P., Cottin P., Brustis J.J. (2002). Calpain and myogenesis: development of a convenient cell culture model. Biol. Cell., 94: 65–76.
- Dehnavi E., Ahani-Azari M., Hasani S., Nassiry M.R., Mohajer M., Khan-Ah-madi A.R., Shahmohamadi L., Yousefi S. (2012). Association between yearling weight and Calpastatin and Calpain loci polymorphism in Iranian Zel sheep. Iran. J. Appl. Anim. Sci., 2: 131–135.
- Felício A.M., Boschiero C., Balieiro J.C.C., Ledur M.C., Ferraz J.B.S., Michelan--Filho T., Moura A.S., Coutinho L.L. (2013). Identification and association of polymorphisms in CAPN1 and CAPN3 candidate genes related to performance and meat quality traits in chickens. Genet. Mol. Res., 12: 472–482.
- Goll D.E., Thompson V.F., Li H., Wei W.E.I., Cong J. (2003). The calpain system. Physiol. Rev., 83: 731–801.
- Gorlov I.F., Shirokova N.V., Randelin A.V., Voronkova V.N., Mosolova N.I., Zlobina E.Y., Kolosov Y.A., Bakoev N.F., Leonova M.A., Bakoev S.Y., Kolo-sov A.Y., Getmantseva L.V. (2016). CAST/MspI gene polymorphism and its impact on growth traits of Soviet Merino and Salsk sheep breeds in the South European part of Russia. Turk. J. Vet. Anim. Sci., 40: 399–405.
- Greguła-Kania M. (2012). Effect of calpastatin gene polymorphism on lamb growth and muscling. Ann. Anim. Sci., 12: 63–72.
- Grochowska E., Borys B., Grzeskowiak E., Mroczkowski S. (2017). Effect of the calpain small subunit 1 gene (CAPNS1) polymorphism on meat quality traits in sheep. Small Rumin. Res., 150: 15–21.
- Hou G., Huang M., Gao X., Li J., Gao H., Ren H., Xu S. (2011). Association of Calpain 1 (CAPN1) and HRSP12 allelic variants in beef cattle with carcass traits. Afr. J. Biotechnol., 10: 13714–13718.
- Jawasreh K.I., Jadallah R., Al-Amareen A.H., Abdullah A.Y., Al-Qaisi A., Alra-washdeh I.M., Al-Zghoul M.F., Ahamed M.K.A., Obeidat B. (2017). Association between MspI calpastatin gene polymorphisms, growth performance, and meat characteristics of Awassi sheep. Indian J. Anim. Sci., 87: 635–639.
- Jucá A.F., Faveri J.C., Melo-Filho G.M., Ribeiro-Filho A.L., Azevedo H.C., Muniz E.N., Pinto L.F.B. (2014) Performance of the Santa Inês breed raised on pasture in semiarid tropical regions and factors that explain trait variation. Trop. Anim. Health Prod., 46: 1249–1256.
- Jucá A.F., Faveri J.C., Melo-Filho G.M., Ribeiro-Filho A.L., Azevedo H.C., Mu-niz E.N., Pedrosa V.B., Pinto L.F.B. (2016). Effects of birth type and family on the variation of carcass and meat traits in Santa Inês sheep. Trop. Anim. Health Prod., 48: 435–443.
- Kemp C.M., Oliver W.T., Wheeler T.L., Chishti A.H., Koohmaraie M. (2013). The effects of CAPN1 gene inactivation on skeletal muscle growth, development, and atrophy, and the compensatory role of other proteolytic systems. J. Anim. Sci., 91: 3155–3167.
- Khan S.U.H., Riaz M.N., Ghaffar A., Khan M.F.U. (2012). Calpastatin (CAST) gene polymorphism and its association with average daily weight gain in Balkhi and Kajli sheep and Beetal goat breeds. Pakistan J. Zool., 44: 377–382.
- Knight M.I., Daetwyler H.D., Hayes B.J., Hayden M.J., Ball A.J., Pethick D.W., Mc Donagh M.B. (2014). An independent validation association study of carcass quality, shear force, intramuscular fat percentage and omega-3 polyunsaturated fatty acid content with gene markers in Australian lamb. Meat Sci., 96: 1025–1033.
- Kumar S.N., Jayashankar M.R., Ruban W., Sreesujatha R.M., Devi Y.S.R. (2018) Association of calpastatin polymorphism with carcass and meat quality traits of Bandur sheep. Int. J. Livest. Res., 8: 232–243.
- Lake S.L., Lyon H., Tantisira K., Silverman E.K,Weiss S.T., Laird N.M., Schaid D.J. (2003). Estimation and tests of haplotype-environment interaction when linkage phase is ambiguous. Hum. Hered., 55: 56–65.
- Langmead B., Salzberg S.L. (2012). Fast gapped-read alignment with Bowtie 2. Nat. Methods, 4: 357–359.
- Leal-Gutiérrez J.D., Elzo M.A., Johnson D.D., Scheffler T.L., Scheffler J.M., Ma-teescu R.G. (2018). Association of μ-calpain and calpastatin polymorphisms with meat tenderness in a Brahman-Angus population. Front. Genet., 9: 56.
- Lebart M.C., Benyamin Y. (2006). Calpain involvement in the remodeling of cytoskeletal anchorage complexes. FEBS J., 273: 3415–3426.
- Mahrous K.F., Hassanane M.S., Shafey H.I., Mordy M.A., Rushdi H.E. (2016). Association between single nucleotide polymorphism in ovine Calpain gene and growth performance in three Egyptian sheep breeds. J. Genet. Eng. Biotechnol., 14: 233–240.
- Meira A.N., Montenegro H., Coutinho L.L., Mourão G.B., Azevedo H.C., Mu-niz E.N., Machado A.L., Sousa-Jr L.P., Pedrosa V.B., Pinto L.F.B. (2019). Single nucleotide polymorphisms in the GH and IGF1 genes associated with carcass traits in Santa Inês sheep. Animal, 13: 460–468.
- Miquel M.C., Villarreal E., Mezzadra C., Melucci L., Soria L., Corva P., Schor A. (2009). The association of CAPN1 316 marker genotypes with growth and meat quality traits of steers finished on pasture. Genet. Mol. Biol., 32: 491–496.
- Moxham R.W., Brownlie L.E. (1976). Sheep carcasses grading and classification in Australia. Wool Tech. Sheep Bree., 23: 17–25.
- Nassiry M.R., Tahmoorespour M., Javadmanesh A., Soltani M., Far S.F. (2006). Calpastatin polymorphism and its association with daily gain in Kurdi sheep. Iran. J. Biotechnol., 4: 188–192.
- NRC (2007). Nutrient Requirements of Small Ruminants: Sheep, Goats, Cervids and New World Camelids. Natl. Acad. Press, Washington, DC, USA.
- Palmer B.R., Roberts N., Hickford J.G.H., Bickerstaffe R. (1998). PCR-RFLP for MspI and NcoI in the Ovine Calpastatin Gene. J. Anim. Sci., 76: 1499–1500.
- Pérez-Enciso M., Misztal I. (2011). Qxpak.5: Old mixed model solutions for new genomics problems. BMC Bioinformatics, 12: 202.
- Pratiwi N., Maskur M., Priyanto R., Jakaria J. (2016). Novel SNP of calpain-1 (CAPN1) gene and its association with carcass and meat characteristics traits in Bali cattle. J. Indonesian Trop. Anim. Agric., 41: 109–116.
- Ramayo-Caldas Y., Renand G., Ballester M., Saintilan R., Rocha D. (2016). Multi-breed and multi-trait co-association analysis of meat tenderness and other meat quality traits in three French beef cattle breeds. Genet. Sel. Evol., 48: 37.
- Ropka-Molik K., Robert E., Tyra M., Piórkowska K., Oczkowicz M., Szyndler--Nedza M., Bereta A. (2017). CAPN1 gene as a potential marker for growth performance and carcass characteristics in pigs. Anim. Prod. Sci., 57: 1014–1021.
- Sheng X., Song X., Yu Y., Niu L., Li S., Li H., Wei C., Liu T., Zhang L., Du L. (2011). Characterization of microRNAs from sheep (Ovis aries) using computational and experimental analyses. Mol. Biol. Rep., 38: 3161–3171.
- Sun X., Wu X., Fan Y., Mao Y., Ji D., Huang B., Yang Z. (2018). Effects of polymorphisms in CAPN1 and CAST genes on meat tenderness of Chinese Simmental cattle. Arch. Anim. Breed, 61: 433–439.
- Sutikno S., Yamin M., Sumantri C. (2011). Association of polymorphisms calpastatin gene with body weight of local sheep in Jonggol, Indonesia. Media Peternakan J. Animal Sci. Technol., 34: 1–6.
- Van-Ba H., Venkata B.R., Inho H. (2015). Role of calpastatin in the regulation of mRNA expression of calpain, caspase, and heat shock protein systems in bovine muscle satellite cells. In Vitro Cell Dev. Biol. Anim., 51: 447–454.
- Yilmaz O., Cemal I., Karaca O., Ata N. (2014). Association of Calpastatin (CAST) gene polymorphism with weaning weight and ultrasonic measurements of loin eye muscle in Kıvırcık lambs. Kafkas Univ. Vet. Fak. Derg., 20: 675–680.
- Zhang Z.R., Zhu Q., Liu Y.P. (2007). Correlation analysis on single nucleotide polymorphism of CAPN1 gene and meat quality and carcass traits in chickens. Agr. Sci. China, 6: 749–754.
- Zhang Z.R., Liu Y.P., Jiang X., Du H.R., Zhu Q. (2008). Study on association of single nucleotide polymorphism of CAPN1 gene with muscle fibre and carcass traits in quality chicken populations. J. Anim. Breed. Genet., 125: 258–264.
- Zhbannikov I.Y., Hunter S.S., Settles M.L. (2017). SEQYCLEAN User Manual. Retrieved on 13 December 2016 from http://sourceforge.net/projects/seqclean/files/
- Zhou Y.G., Xiong Y., Yan C.W., Jiang X.S., Ran J.S., Jin J., Wang Y., Lan D., Ren P., Hu Y.D., Liu Y.P. (2017). Experimental verification of CAPN1 and CAST gene polymorphisms in different generations of Da-Heng broilers. Biomed Res. Int., 2017: 7968450.
Language: English
Page range: 465 - 483
Submitted on: Jun 4, 2019
Accepted on: Dec 13, 2019
Published on: May 4, 2020
Published by: National Research Institute of Animal Production
In partnership with: Paradigm Publishing Services
Publication frequency: 4 times per year
Keywords:
Related subjects:
© 2020 Alessandro Lima Machado, Ariana Nascimento Meira, Evandro Neves Muniz, Hymerson Costa Azevedo, Luiz Lehmann Coutinho, Gerson Barreto Mourão, Victor Breno Pedrosa, Luís Fernando Batista Pinto, published by National Research Institute of Animal Production
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.