Genetic Variation of Two Horse Breeds in Cpg Islands of Oas1 Locus
References
- Cartharius K., Frech K., Grote K., Klocke B., Haltmeier M., Klingenhoff A., Frisch M., Bayerlein M., Werner T. (2005). MatInspector and beyond: promoter analysis based on transcription factor binding sites. Bioinformatics, 21: 2933-2942.
- Deaton A.M., B i r d A. (2011). CpG islands and the regulation of transcription. Gene. Dev., 25: 1010-1022.
- Derse D., Crise B., Li Y., Princler G., Lum N., Stewart C., McGrath C.F., Hughes S.H., Munroe D.J., W u X. (2007). Human T-cell leukemia virus type 1 integration target sites in the human genome: comparison with those of other retroviruses. J Virol., 81: 6731-6741.
- Excoffier L. (2010). Arlequin suite ver 3.5: A new series of programs to perform population genetics analyses under Linux and Windows. Mol. Ecol. Resour., 10: 564-567.
- Excoffier L., Slatkin M. (1995). Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population. Mol. Biol. Evol., 12: 921-927.
- Gillet N.A., Gutiérrez G . , Rodriguez S . M . , de Brogniez A . , Renotte N . , Alvarez I . , Trono K . , Willems L. (2013). Massive depletion of bovine leukemia virus proviral clones located in genomic transcriptionally active sites during primary infection. PLoS Pathog., 9: e1003687.
- Guo S.W, Thompson . E.A. (1992). Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics, 48: 361-372
- Hamanova K., Majzlik I., GlasnakV., Schröffelowa D. (2001). Characterization and comparison of some horse breeds in Czech Republic as based on microsatellite markers polymorphism. Anim. Sci. Pap. Rep., 19: 219-230.
- HellmanA., Chess A. (2010). Extensive sequence-influenced DNA methylation polymorphism in the human genome. Epigenetics and Chromatin, 3, p. 11.
- Knapp S., Yee L.J., Frodsham A.J., Hennig B.J., Hellier S., Zhang L., WrightM., Chiaramonte M., Graves M., Thomas H.C., Hill A.V., Thursz M.R. (2003). Polymorphisms in interferon-induced genes and the outcome of hepatitis C virus infection: roles of MxA, OAS-1 and PKR. Genes Immun., 4: 411-419.
- Larsen F., Gundersen G., Lopez R., Prydz H. (1992). CpG islands as gene markers in the human genome. Genomics, 13: 1095-1107.
- Lim J.K., Lisco A., Mc Dermott D.H., Huynh L., WardJ.M., JohnsonB., Johnson H., Pape J., Foster G.A., Krysztof D., Follmann D., Stramer S.L., Margolis L.B., MurphyP.M. (2009). Genetic variation in OAS1 is a risk factor for initial infection with West Nile virus in man. PLoS Pathog., 5: e1000321.
- Lucas M., Mashimo T., Frenkiel M.P., Simon- ChazottesD., Montagutelli X., Ceccaldi P.E., Guénet J.L., Desprès P. (2003). Infection of mouse neurones by West Nile virus is modulated by the interferon-inducible 2'-5' oligoadenylate synthetase 1b protein. Immunol Cell Biol., 81: 230-236.
- Matukumalli L.K., Lawley C.T., Schnabel R.D., Taylor J.F., A l l a n M.F., Heaton M.P., O ’ ConnellJ., Moore S.S., Smith T.P., Sonstegard T.S., Van Tassell C.P., (2009). Development and characterization of a high density SNP genotyping assay for cattle. PLoS One 4: e5350.
- Melchjorsen J., Kristiansen H., Christiansen R., Rintahaka J., MatikainenS., Paludan S.R., Hartmann R. (2009). Differential regulation of the OASL and OAS1 genes in response to viral infections. J. Interf. Cytok. Res., 29: 199-207.
- Rios J.J., PerelyginA.A., Long M.T., Lear T.L., Zharkikh A.A., Brinton M.A., Adelson D.L. (2007). Characterization of the equine 2’-5’ oligoadenylate synthetase 1 (OAS1) and ribonuclease L (RNASEL) innate immunity genes. BMC Genomics, 7, 8: 313.
- Rios J.J., FlemingJ.G., Bryant U.K., Carter C.N., Huber J.C., Long M.T., Spencer T.E., Adelson D.L. (2010). OAS1 polymorphisms are associated with susceptibility to West Nile encephalitis in horses. PLoS One 7, e10537.
- Summers K., Amos W. (1997). Behavioral, ecological and molecular genetic analyses of reproductive strategies in the Amazonian dart-poison frog, Dendrobates ventrimaculatus. Behav. Ecol., 8: 260-267.
- Werner F., Durstewitz G., Habermann F., Thaller G, Krämer W., Kollers S., Buitkamp J., Georges M., Brem G., MosnerJ., Fries R. (2004). Detection and characterization of SNPs useful for identity control and parentage testing in major European dairy breeds. Anim. Genet., 35: 44-49.
- Ząbek T., Nogaj A., Radko A., NogajJ., Slota E. (2005). Genetic variation of Polish endangered Bilgoraj horses and two common horse breeds in microsatellite loci. J. Appl. Genet., 46: 299-305.
- Ząbek T., Czapla P., Bugno - Poniewierska M., Wnuk M., Lewinska A., Oklejewicz B., Bartosz G., Słota E. (2012). Genetic structure of Hucul and Anglo-Arabian horses at the TERT locus. Ann. Anim. Sci., 12: 483-494.
Language: English
Page range: 841 - 850
Submitted on: Jan 30, 2014
Accepted on: Aug 1, 2014
Published on: Nov 15, 2014
Published by: National Research Institute of Animal Production
In partnership with: Paradigm Publishing Services
Publication frequency: 4 times per year
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© 2014 Tomasz Ząbek, Ewelina Semik, Agnieszka Fornal, Monika Bugno-Poniewierska, published by National Research Institute of Animal Production
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.