Have a personal or library account? Click to login
New Polymorphisms in Regulatory Region of CAPN3 Gene with no Effect on Gene Expression in Breast Muscle of Broiler Chickens Cover

New Polymorphisms in Regulatory Region of CAPN3 Gene with no Effect on Gene Expression in Breast Muscle of Broiler Chickens

Open Access
|Jul 2014

References

  1. Barendse W., Harrison B.E., Bunch R.J., Thomas M.B. (2008). Variation at the calpain 3 gene is associated with meat tenderness in zebu and composite breeds of cattle. BMC Genet., 9: 41–48.
  2. Barrett C.W., Smith J.J., Lu L.C., Markham N., Stengel K.R., Short S.P., Zhang B., Hunt A.A., Fingleton B.M., Carnahan R.H., Engel M.E., Chen X., Beauchamp R.D., Wilson K.T., Hiebert S.W., Reynolds A.B., Williams C.S. (2012). Kaiso directs the transcriptional corepressor MTG16 to the Kaiso binding site in target promoters. PLoS One, 7(12): e51205.
  3. Bartel D.P. (2009). MicroRNAs: target recognition and regulatory functions. Cell, 136: 215–233.
  4. Bertrand E., Chartrand P., Schaefer M., Shenoy S.M., Singer R.H., Long R.M. (1998). Localization of ASH1mRNA particles in living yeast. Mol. Cell., 2: 437–445.
  5. Chang T.H., Huang H.Y., Hsu J.B., Weng S.L., Horng J.T., Huang H.D. (2013). An enhanced computational platform for investigating the roles of regulatory RNA and for identifying functional RNA motifs. BMC Bioinformatics, 14 Suppl 2: S4.
  6. Chatterjee S., Pal J.K. (2009). Role of 5’- and 3’-untranslated regions of mRNAs in human diseases. Biol. Cell., 101: 251–262.
  7. Chomczyń ski P. (1993). A reagent for the single-step simultaneous isolation of RNA, DNA and proteins from cell and tissue samples. Biotechniques, 15: 532–537.
  8. Davuluri R.V., Suzuki Y., Sugano S., Plass C., Huang T.H. (2008). The functional consequences of alternative promoter use in mammalian genomes. Trends Genet., 24: 167–177.
  9. Duan Z.J., Fang X., Rohde A., Han H., Stamatoyannopoulos G., Li Q. (2002). Developmental specificity of recruitment of TBP to the TATA box of the human gamma-globin gene. Proc. Natl. Acad. Sci., 99: 5509–5514.
  10. Eckner R., Ewen M.E., Newsome D., Gerdes M., De Caprio J.A., Lawrence J.B., Livingston D.M. (1994). Molecular cloning and functional analysis of the adenovirus E1A-associated 300-kD protein (p300) reveals a protein with properties of a transcriptional adaptor. Genes Dev., 8: 869–884.
  11. Everett L., Hansen M., Hannenhalli S. (2010). Regulating the regulators: modulators of transcription factor activity. Methods Mol. Biol., 674: 297–312.
  12. Felí cio A.M., Boschiero C., Balieiro J.C., Ledur M.C., Ferraz J.B., Filho M.T., Moura A.S., Coutinho L.L. (2013). Identification and association of polymorphisms in CAPN1 and CAPN3 candidate genes related to performance and meat quality traits in chickens. Genet. Mol. Res., 12: 472–482.
  13. Gandolfi G., Pomponio L., Ertbjerg P., Karlsson A.H., Nanni Costa L., Lametsch R., Russo V., Davoli R. (2011). Investigation on CAST, CAPN1 and CAPN3 porcine gene polymorphisms and expression in relation to post-mortem calpain activity in muscle and meat quality. Meat Sci., 88: 694–700.
  14. Geesink G.H., Taylor R.G., Koohmaraie M., (2005). Calpain 3/p94 is not involved in postmortem proteolysis. J. Anim. Sci., 83: 1646–1652.
  15. Gronemeyer H., Gustafsson J.A., Laudet V. (2004). Principles for modulation of the nuclear receptor superfamily. Nat. Rev. Drug Discov., 3: 950–964.
  16. Heinemeyer T., Wingender E., Reuter I., Hermjakob H., Kel A.E., Kel O.V., Ignatieva E.V., Ananko E.A., Podkolodnaya O.A., Kolpakov F.A., Pod kolodny N.L., Kolchanov N.A. (1998). Databases on Transcriptional Regulation: TRANSFAC, TRRD and COMPEL. Nucleic Acids Res., 26: 364–370.
  17. Hou G., Zeng H., Wang D.G., Huang X., Xu S. (2010). Genetic variation in CAPN3 gene and its relationship with carcass traits in cattle. Chin. J. Anim. Vet. Sci., 41: 398–402
  18. Huang Y., Wang K.K.W. (2001). The calpain family and human disease. Trends Mol. Med., 7: 355–362.
  19. Ilian M.A., Morton J.D., Kent M.P., Le Couteur C.E., Hickfo rd J., Cowley R., Bickerstaffe R. (2001). Intermuscular variation in tenderness: Association with the ubiquitous and muscle-specific calpains. J. Anim. Sci., 79: 122-132.
  20. Kawabe K., Maeda Y., Okamoto S., Hashiguchi T. (1997). Correlation between skeletal muscle calpain activity and fractional rate of muscle degradation of Japanese quail, Coturnix coturnix japonica. Jpn. Poultry Sci., 34: 231–239.
  21. Kemp C.M., Sensky P.L., Bardsley R.G., Buttery P.J., Parr T. (2010). Tenderness– an enzymatic view. Meat Sci., 84: 248-256.
  22. Levine M., Tjian R. (2003). Transcription regulation and animal diversity. Nature, 424: 147–151.
  23. Lin H. (2007). piRNA in Germ Line. Science, 316, p. 397.10.1126/science.113754317446387
  24. Loots G., Ovcharenko I. (2004). rVista 2.0: evolutionary analysis of transcription factor binding sites. Nucleic Acids Res., 32: 217–221.
  25. Pió rkowska K., Oczkowicz M., Różycki M., Ropka-Molik K., Piestrzyń ska-Kajtoch A. (2011). Novel porcine housekeeping genes for real-time RT-PCR experiments normalization in adipose tissue: assessment of leptin mRNA quantity in different pig breeds. Meat. Sci., 87: 191–195.
  26. Poussard S., Duvert M., Balcerzak D., Ramassamy S., Brustis J.J., Cottin P., Ducastaing A. (1996). Evidence for implication of muscle-specific calpain (p94) in myofibrillar integrity. Cell Growth Differ., 7: 1461–1469.
  27. Sorimachi H., Suzuki K. (2001). The structure of calpain. J. Biochem., 129: 653–664.
  28. Suzuki K., Sorimachi H., Yoshizawa T., Kimbara K., Ishiura S. (1995). Calpain: novel family members. activation and physiological function. Biol. Chem. Hoppe Seyler., 376: 523–529.
  29. Suzuki K., Hata S., Kawabata Y., Sorimachi H. (2004). Structure, activation and biology of calpain. Diabetes, 53, Suppl. 1: 12–18.
  30. Teufel D.P., Freund S.M., Bycroft M., Fersht A.R. (2007). Four domains of p300 each bind tightly to a sequence spanning both transactivation subdomains of p53. Proc. Natl. Acad. Sci. USA., 104: 7009–7014.
  31. Zhang Z.R., Liu Y.P., Yao Y.G., Jiang X.S., Du H.R., Zhu Q. (2009). Identification and association of the single nucleotide polymorphisms in calpain3 (CAPN3) gene with carcass traits in chickens. BMC Genet., 10, p. 10.10.1186/1471-2156-10-10265652219265533
  32. Zhang Z.R., Zhu Q., Yao Y.G., Jiang X.S., Du H.R., Liu Y.P. (2012). Characterization of the expression profile of calpain-3 (CAPN3) gene in chickens. Mol. Biol. Rep., 39: 3517–3521.
DOI: https://doi.org/10.2478/aoas-2014-0032 | Journal eISSN: 2300-8733 | Journal ISSN: 1642-3402
Language: English
Page range: 511 - 524
Submitted on: Dec 14, 2013
|
Accepted on: Feb 14, 2014
|
Published on: Jul 29, 2014
In partnership with: Paradigm Publishing Services
Publication frequency: Volume open

© 2014 Katarzyna Piórkowska, Joanna Nowak, Katarzyna Połtowicz2, Katarzyna Ropka-Molik, published by National Research Institute of Animal Production
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.