Have a personal or library account? Click to login
Oddziaływania Pomiędzy Małymi, Regulatorowymi RNA a Dwuskładnikowymi Systemami Transdukcji Sygnału u Bakterii Gram-Ujemnych Cover

Oddziaływania Pomiędzy Małymi, Regulatorowymi RNA a Dwuskładnikowymi Systemami Transdukcji Sygnału u Bakterii Gram-Ujemnych

Open Access
|Nov 2022

References

  1. Adam K., Hunter T.: Histidine kinases and the missing phosphoproteome from prokaryotes to eukaryotes. <em>Lab. Invest.</em> <bold>98</bold>, 233–247 (2017)
  2. Afonyushkin T., Vecerek B., Moll I., Blasi U., Kaberdin V.: Both RNase E and RNase III control the stability of <em>sodB</em> mRNA upon translational inhibition by the small regulatory RNA RyhB. <em>Nucleic Acids Res.</em> <bold>33</bold>, 1678–1689 (2005)
  3. Argaman L., Hershberg R., Vogel J., Bejerano G., Wagner E.G., Margalit H., Altuvia S.: Novel small RNA-encoding genes in the intergenic regions of <em>Escherichia coli</em>. <em>Curr Biol.</em> <bold>11</bold>, 941–950 (2001)
  4. Bassler B.L., Bejerano G., Silverman M.: Multiple signalling systems controlling expression of luminescence in <em>Vibrio harveyi</em>: sequence and function of genes encoding a second sensory pathway. <em>Mol. Microbiol.</em> <bold>13</bold>, 273–286 (1994)
  5. Belaaouaj A., Kim K., Shapiro S.: Degradation of outer membrane protein A in <em>Escherichia coli</em> killing by neutrophil elastase. <em>Science</em>, <bold>289</bold>, 1185–1188 (2000)
  6. Bilecen K., Fong J.C.N., Cheng A., Jones C.Z., Zamorano-Sánchez D., Yldiz F.H.: Polymyxin B resistance and biofilm formation in <em>Vibrio cholerae</em> are controlled by the response regulator CarR. <em>Infect Immun.</em> <bold>83</bold>, 1199–1209 (2015)
  7. Bilecen K., Yildiz F.H.: Identification of a calcium-controlled negative regulatory system affecting <em>Vibrio cholerae</em> biofilm formation. <em>Environ. Microbiol.</em> <bold>11</bold>, 2015–2029 (2009)
  8. Bordi C., Filoux A. i wsp.: Regulatory RNAs and the HptB/RetS signalling pathways fine-tune <em>Pseudomonas aeruginosa</em> pathogenesis. <em>Mol. Microbiol.</em> <bold>76</bold>, 1427–1443 (2010)
  9. Bouvier M., Sharma C.M., Mika F., Nierhaus K.N., Vogel J.: Small RNA binding to 5′ mRNA coding region inhibits translational initiation. <em>Mol. Cell.</em> <bold>32</bold>, 827–837 (2008)
  10. Brantl S.: Regulatory mechanisms employed by <em>cis</em>-encoded antisense RNAs. <em>Curr. Opin. Microbiol.</em> <bold>10</bold>, 102–109 (2007)
  11. Bretl D.J. Demetriadou C., Zahrt T.C.: Adaptation to environmental stimuli within the host: two-component signal transduction systems of <em>Mycobacterium tuberculosis</em>. <em>Microbiol. Mol. Biol. Rev.</em> <bold>75</bold>, 566–582 (2011)
  12. Brombacher E., Barrato A., Dorel C., Landini P.: Gene expression regulation by the curli activator CsgD protein: modulation of cellulose biosynthesis and control of negative determinants for microbial adhesion. <em>J. Bacteriol.</em> <bold>188</bold>, 2027–2037 (2006)
  13. Brosse A. Korobeinikova A., Gottesman S., Guillier M.: Unexpected properties of sRNA promoters allow feedback control via regulation of a two-component system. <em>Nucleic Acids Res.</em> <bold>44</bold>, 9650–9666 (2016)
  14. Cai S.J., Inouye M.: EnvZ-OmpR interaction and osmoregulation in <em>Escherichia coli</em>. <em>J. Biol. Chem.</em> <bold>277</bold>, 24155–24161(2002)
  15. Casper-Lindley C., Yildiz F.H.: VpsT is a transcriptional regulator required for expression of <em>vps</em> biosynthesis genes and the development of rugose colonial morphology in <em>Vibrio cholerae</em> O1 El Tor. <em>J. Bacteriol.</em> <bold>186</bold>, 1574–1578 (2004)
  16. Cassat J.E., Skaar E.P.: Iron in infection and immunity. <em>Cell Host Microbe</em>, <bold>13</bold>, 509–519 (2013)
  17. Castillo-Keller M., Vuong P., Misra R.: Novel mechanism of <em>Escherichia coli</em> porin regulation. <em>J. Bacteriol.</em> <bold>188</bold>, 576–586 (2006)
  18. Chen S., Zhang A., Blyn L., Storz G.: MicC, a second small-RNA regulator of Omp protein expression in <em>Escherichia coli</em>. <em>J. Bacteriol.</em> <bold>186</bold>, 6689–6697 (2004)
  19. Chen X., Schauder S., Potier N., VanDorsselaer A., Pelczer I., Bessler B.L., Hughson F.: Structural identification of a bacterial quorum-sensing signal containing boron. <em>Nature</em>, <bold>415</bold>, 545–549 (2002)
  20. Chilcott G.S., Hughes K.T.: Coupling of flagellar gene expression to flagellar assembly in <em>Salmonella enterica</em> serovar typhimurium and <em>Escherichia coli</em>. <em>Microbiol. Mol. Biol. Rev.</em> <bold>64</bold>, 694–708 (2000)
  21. Chirwa N.T., Herrington M.B.: CsgD, a regulator of curli and cellulose synthesis, also regulates serine hydroxymethyltransferase synthesis in <em>Escherichia coli</em> K-12. <em>Microbiology</em> (Reading), <bold>149</bold>, 525–535 (2003)
  22. Czyżewska-Dors E., Dors A., Pomorska-Mól M.: Właściwości biofilmu bakteryjnego warunkujące oporność na antybiotyki oraz metody jego zwalczania. <em>Zycie Weterynaryjne</em>, <bold>93</bold>, 765–771 (2018)
  23. Douchin V., Bohn C., Bouloc P.: Down-regulation of porins by a small RNA bypasses the essentiality of the regulated intramembrane proteolysis protease RseP in <em>Escherichia coli</em>. <em>J. Biol. Chem.</em> <bold>281</bold>, 12253–12259 (2006)
  24. Escolar L., Perez-Martin J., de Lorenzo V.: Opening the iron box: transcriptional metalloregulation by the Fur protein. <em>J. Bacteriol.</em> <bold>181</bold>, 6223–6229 (1999)
  25. Fitzgerald D.M., Bonocora R., Wade J.: Comprehensive mapping of the <em>Escherichia coli</em> flagellar regulatory network. <em>PLoS Genet.</em> <bold>10</bold>, e1004649 (2014)
  26. Fong J.C.N., Syed K., Klose K., Yldiz F.: Role of <em>Vibrio</em> polysaccharide (<em>vps</em>) genes in VPS production, biofilm formation and <em>Vibrio cholerae</em> pathogenesis. <em>Microbiology</em> (Reading). <bold>156</bold>, 2757–2769 (2010)
  27. Freeman J.A., Bassler B.L.: A genetic analysis of the function of LuxO, a two-component response regulator involved in quorum sensing in <em>Vibrio harveyi</em>. <em>Mol. Microbiol.</em> <bold>31</bold>, 665–677 (1999)
  28. Gao R., Stock A.M.: Biological insights from structures of two-component proteins. <em>Annu. Rev. Microbiol.</em> <bold>63</bold>, 133–154 (2009)
  29. Gimpel M.: The world of small RNAs and regulatory peptides in prokaryotes. <a href="https://schaechter.asmblog.org/schaechter/2019/04/the-world-of-small-rnas-and-regulatory-peptides-in-prokaryotes.html" target="_blank" rel="noopener noreferrer" class="text-signal-blue hover:underline">https://schaechter.asmblog.org/schaechter/2019/04/the-world-of-small-rnas-and-regulatory-peptides-in-prokaryotes.html</a> (dostęp: 06.09.2022)
  30. Göpel Y., Görke B.: Rewiring two-component signal transduction with small RNAs. <em>Curr. Opin. Microbiol.</em> <bold>15</bold>, 132–139 (2012)
  31. Gottesman S., McCullen C.A., Guillier M., Vanderpool C.K., Majdalani N., Benhammou J., Thompson K.M., FitzGerald P.C., Sowa N.A., FitzGerald D.J.: Small RNA regulators and the bacterial response to stress. <em>Cold Spring Harb. Symp. Quant. Biol.</em> <bold>71</bold>, 1–11 (2006)
  32. Gottesman S.: Small RNAs shed some light. <em>Cell</em>, <bold>118</bold>, 1–2 (2004)
  33. Gottesman S., Storz G.: Bacterial small RNA regulators: versatile roles and rapidly evolving variations. <em>Cold Spring Harb. Perspect. Biol.</em> <bold>3</bold>, 12, (2011)
  34. Guillier M., Gottesman S., Storz G.: Modulating the outer membrane with small RNAs. <em>Genes Dev.</em> <bold>20</bold>, 2338–2348 (2006)
  35. Guillier M., Gottesman S.: Remodelling of the <em>Escherichia coli</em> outer membrane by two small regulatory RNAs. <em>Mol. Microbiol.</em> <bold>59</bold>, 231–247 (2006)
  36. Guillier M., Gottesman S.: The 5′ end of two redundant sRNAs is involved in the regulation of multiple targets, including their own regulator. <em>Nucleic Acids Res.</em> <bold>36</bold>, 6781–6794 (2008)
  37. Hammar M., Arnqvist A., Bian Z., Olsen A., Normark S.: Expression of two <em>csg</em> operons is required for production of fibronectin- and congo red-binding curli polymers in <em>Escherichia coli</em> K-12. <em>Mol. Microbiol.</em> <bold>18</bold>, 661–670 (1995)
  38. Hammer B.K., Bassler B.L.: Quorum sensing controls biofilm formation in <em>Vibrio cholerae</em>. <em>Mol. Microbiol.</em> <bold>50</bold>, 101–104 (2003)
  39. Hantke K.: Iron and metal regulation in bacteria. <em>Curr. Opin. Microbiol.</em> <bold>4</bold>, 172–177 (2001)
  40. Hari-Dass R., Shah C., Meyer D., Raynes J.: Serum amyloid A protein binds to outer membrane protein A of gram-negative bacteria. <em>J. Biol. Chem.</em> <bold>280</bold>, 18562–18567 (2005)
  41. Higgins D.A. Pomianek M., Kraml C., Taylor R., Semmelhack M., Bassler B.: The major <em>Vibrio cholerae</em> autoinducer and its role in virulence factor production. <em>Nature</em>, <bold>450</bold>, 883–886 (2007)
  42. Hikita C., Satake Y., Yamada H., Mizuno T., Mizushima S.: Structural and functional characterization of the OmpF and OmpC porins of the <em>Escherichia coli</em> outer membrane: studies involving chimeric proteins. <em>Res. Microbiol.</em> <bold>140</bold>, 3, 177–190 (1989)
  43. Hoch J.A.: Two-component and phosphorelay signal transduction. <em>Curr. Opin. Microbiol.</em> <bold>3</bold>, 165–170 (2000)
  44. Holmqvist E., Vogel J.: A small RNA serving both the Hfq and CsrA regulons. <em>Genes Dev.</em> <bold>27</bold>, 1073–1078 (2013)
  45. Jimenez P.N., Koch G., Thompson J., Xavier K., Cool R., Quax W.: The multiple signaling systems regulating virulence in <em>Pseudomonas aeruginosa</em>. <em>Microbiol. Mol. Biol. Rev.</em> <bold>76</bold>, 46–65 (2012)
  46. Johansen J. Rasmussen A., Overgaard M., Valentin-Hansen P.: Conserved small non-coding RNAs that belong to the sigmaE regulon: role in down-regulation of outer membrane proteins. <em>J. Mol. Biol.</em> <bold>364</bold>, 1–8 (2006)
  47. Juda M., Dadas E., Malm A.: Rola dwuskładnikowych systemów regulacyjnych w chorobotwórczości i lekooporności bakterii. <em>Post. Microbiol.</em> <bold>46</bold>, 237–247 (2007)
  48. Jung S.A., Chapman C., Ng W.: Quadruple quorum-sensing inputs control <em>Vibrio cholerae</em> virulence and maintain system robustness. <em>PLoS Pathog.</em> <bold>11</bold>, e1004837 (2015)
  49. Karlinsey J.E., Tanaka S., Bettenworth V., Yamaguchi S., Boos W., Aizawa S., Hughes K.: Completion of the hook-basal body complex of the <em>Salmonella typhimurium</em> flagellum is coupled to FlgM secretion and <em>fliC</em> transcription. <em>Mol. Microbiol.</em> <bold>37</bold>, 1220–1231 (2000)
  50. Kelly R.C., Bolitho M., Higgins D., Lu W., Ng W., Jeffrey P., Robinowitz J., Semmelhack M., Hughson F., Bassler B.: The <em>Vibrio cholerae</em> quorum-sensing autoinducer CAI-1: analysis of the biosynthetic enzyme CqsA. <em>Nat. Chem. Biol.</em> <bold>5</bold>, 891–895 (2009)
  51. Lapouge K., Schubert M., Allain F., Haas D.: Gac/Rsm signal transduction pathway of gamma-proteobacteria: from RNA recognition to regulation of social behaviour. <em>Mol. Microbiol.</em> <bold>67</bold>, 241–253 (2008)
  52. Lee K., Wen Y., Park N., Kim K.: Quorum sensing and iron-dependent coordinated control of autoinducer-2 production via small RNA RyhB in <em>Vibrio vulnificus</em>. <em>Sci. Rep.</em> <bold>12</bold>, 831 (2022)
  53. Lenz D. Miller M., Zhu J., Kulkarni R., Bassler B.: CsrA and three redundant small RNAs regulate quorum sensing in <em>Vibrio cholerae</em>. <em>Mol. Microbiol.</em> <bold>58</bold>, 1186–1202 (2005)
  54. Lenz D., Mok K., Lilley B., Kulkarni R., Wingreen N., Bassler B.: The small RNA chaperone Hfq and multiple small RNAs control quorum sensing in <em>Vibrio harveyi</em> and <em>Vibrio cholerae</em>. <em>Cell</em>, <bold>118</bold>, 69–82 (2004)
  55. Li W., Ying X., Lu Q., Chen L.: Predicting sRNAs and their targets in bacteria. <em>Genomics Proteomics Bioinformatics</em> <bold>10</bold>, 276–284 (2012)
  56. Lorenz C., Gesell T., Zimmermann B., Schoebert U., Bilusic I., Rajkowitsch L., Waldsich C., von Haeseler A., Schroeder R.: Genomic SELEX for Hfq-binding RNAs identifies genomic aptamers predominantly in antisense transcripts. <em>Nucleic Acids Res.</em> <bold>38</bold>, 3794–3808 (2010)
  57. Machtel P.J.: The ample world of riboswitches. <em>Postepy Biochem.</em> <bold>66</bold>, 100–110 (2020)
  58. Majdalani N., Hernandez D., Gottesmann S.: Regulation and mode of action of the second small RNA activator of RpoS translation, RprA. <em>Mol. Microbiol.</em> <bold>46</bold>, 813–826 (2002)
  59. Majdalani N., Chen S., Murrow J., St John K., Gottesman S.: Regulation of RpoS by a novel small RNA: the characterization of RprA. <em>Mol. Microbiol.</em> <bold>39</bold>, 1382–1394 (2001)
  60. Mandin P., Gottesman S.: Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA. <em>EMBO J.</em> <bold>29</bold>, 3094–3107 (2010)
  61. Massé E., Escorcia F., Gottesman S.: Coupled degradation of a small regulatory RNA and its mRNA targets in <em>Escherichia coli</em>. <em>Genes Dev.</em> <bold>17</bold>, 2374–2383 (2003)
  62. Massé E., Vanderpool C., Gottesman S.: Effect of RyhB small RNA on global iron use in <em>Escherichia coli</em>. <em>J. Bacteriol.</em> <bold>187</bold>, 6962–6971 (2005)
  63. Massé E., Gottesman, S.: A small RNA regulates the expression of genes involved in iron metabolism in <em>Escherichia coli</em>. <em>Proc. Natl. Acad. Sci. USA.</em> <bold>99</bold>, 4620–4625 (2002)
  64. Miller M.B. Skorupski K., Lenz D., Taylor R., Bassler B.: Parallel quorum sensing systems converge to regulate virulence in <em>Vibrio cholerae</em>. <em>Cell</em>, <bold>110</bold>, 303–314 (2002)
  65. Miller M.B., Bassler B.L.: Quorum sensing in bacteria. <em>Annu. Rev. Microbiol.</em> <bold>55</bold>, 165–199 (2001)
  66. Morfeldt E., Taylor D., von Gabain A., Arvidson S.: Activation of alpha-toxin translation in <em>Staphylococcus aureus</em> by the trans-encoded antisense RNA, RNAIII. <em>EMBO J.</em> <bold>14</bold>, 4569–4577 (1995)
  67. Neiditch M.B., Federele M., Miller S., Bassler B., Hughson F.: Regulation of LuxPQ receptor activity by the quorum-sensing signal autoinducer-2. <em>Mol. Cell.</em> <bold>18</bold>, 507–518 (2005)
  68. Nikaido, H.: Molecular basis of bacterial outer membrane permeability revisited. <em>Microbiol. Mol. Biol. Rev.</em> <bold>67</bold>, 593–656 (2003)
  69. Oliva G., Sahr T., Buchrieser C.: Small RNAs, 5′ UTR elements and RNA-binding proteins in intracellular bacteria: impact on metabolism and virulence. <em>FEMS Microbiol. Rev.</em> <bold>39</bold>, 331–349 (2015)
  70. Othmer H.G. Xin X., Xue C.: Excitation and adaptation in bacteria-a model signal transduction system that controls taxis and spatial pattern formation. <em>Int. J. Mol. Sci.</em> <bold>14</bold>, 9205–9248 (2013)
  71. Papon N., Stock, A.M.: Two-component systems. <em>Curr. Biol.</em> <bold>29</bold>, R724–R725 (2019)
  72. Patel M., Isaacsin M., Gouws E.: Effect of iron and pH on the survival of <em>Vibrio cholerae</em> in water. <em>Trans. R. Soc. Trop. Med. Hyg.</em><bold>89</bold>, 175–177 (1995)
  73. Pfeiffer V., Papenfort K., Lucchini S., Hinton J., Vogel J.: Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation. <em>Nat. Struct. Mol. Biol.</em> <bold>16</bold>, 840–846 (2009)
  74. Piattelli E., Peltier J., Soutourina O.: Interplay between regulatory RNAs and signal transduction systems during bacterial infection. <em>Genes</em> (Basel), <bold>11</bold>, (2020)
  75. Poole K.: <em>Pseudomonas aeruginosa</em>: resistance to the max. <em>Front. Microbiol.</em> <bold>2</bold>, 65 (2011)
  76. Postle K., Kadner R.J.: Touch and go: tying TonB to transport. <em>Mol. Microbiol.</em> <bold>49</bold>, 869–882 (2003)
  77. Prévost K., Salvail H., Desnowyers G., Phaneuf E., Masse E.: The small RNA RyhB activates the translation of <em>shiA</em> mRNA encoding a permease of shikimate, a compound involved in siderophore synthesis. <em>Mol. Microbiol.</em> <bold>64</bold>, 1260–1273 (2007)
  78. Rabsch W., Klebba P. i wsp.: FepA- and TonB-dependent bacteriophage H8: receptor binding and genomic sequence. <em>J. Bacteriol.</em> <bold>189</bold>, 5658–5674 (2007)
  79. Raczkowska A., Skorek K., Bielecki J., Brzostek K.: OmpR controls <em>Yersinia enterocolitica</em> motility by positive regulation of <em>flhDC</em> expression. <em>Antonie Van Leeuwenhoek,</em> <bold>99</bold>, 381–394 (2011)
  80. Rasmussen A.A., Eriksen M., Gilany K., Udesen C., Franch T., Petersen C., Valentin-Hansen P.: Regulation of <em>ompA</em> mRNA stability: the role of a small regulatory RNA in growth phase-dependent control. <em>Mol. Microbiol.</em> <bold>58</bold>, 1421–1429 (2005)
  81. Ratledge C., Dover L.G.: Iron metabolism in pathogenic bacteria. <em>Annu. Rev. Microbiol.</em> <bold>54</bold>, 881–941 (2000)
  82. Romeo T.: Global regulation by the small RNA-binding protein CsrA and the non-coding RNA molecule CsrB. <em>Mol. Microbiol.</em> <bold>29</bold>, 1321–1330 (1998)
  83. Romeo T., Gong M., Liu M., Brun-Zinkernagel A.: Identification and molecular characterization of <em>csrA</em>, a pleiotropic gene from <em>Escherichia coli</em> that affects glycogen biosynthesis, gluconeogenesis, cell size, and surface properties. <em>J. Bacteriol.</em> <bold>175</bold>, 4744–4755 (1993)
  84. Romilly C., Hoekzema M., Holmqvists., Wagner E.: Small RNAs OmrA and OmrB promote class III flagellar gene expression by inhibiting the synthesis of anti-Sigma factor FlgM. <em>RNA Biol.</em> <bold>17</bold>, 872–880 (2020)
  85. Rutherford S.T., van Kessel, Shao Y., Bassler B.: AphA and LuxR/HapR reciprocally control quorum sensing in <em>Vibrios</em>. <em>Genes Dev.</em> <bold>25</bold>, 397–408 (2011)
  86. Saberi F., Kamali M., Najafi A., Yazdanparast A., Moghaddam M.: Natural antisense RNAs as mRNA regulatory elements in bacteria: a review on function and applications. <em>Cell. Mol. Biol. Lett.</em> <bold>21</bold>, 6 (2016)
  87. Sauer E., Weichenrieder O.: Structural basis for RNA 3′-end recognition by Hfq. <em>Proc. Natl. Acad. Sci. USA</em>, <bold>108</bold>, 13065–13070 (2011)
  88. Serra D.O., Hengge R.: A c-di-GMP-based switch controls local heterogeneity of extracellular matrix synthesis which is crucial for integrity and morphogenesis of <em>Escherichia coli</em> macrocolony biofilms. <em>J. Mol. Biol.</em> <bold>431</bold>, 4775–4793 (2019)
  89. Sharma C.M., Darfeuille F., Plantinga T.H., Vogel J.: A small RNA regulates multiple ABC transporter mRNAs by targeting C/A-rich elements inside and upstream of ribosome-binding sites. <em>Genes Dev.</em> <bold>21</bold>, 2804–2817 (2007)
  90. Shikuma N.J., Fong J., Odell L., Perchuk B., Laub M., Yildiz F.: Overexpression of VpsS, a hybrid sensor kinase, enhances biofilm formation in <em>Vibrio cholerae</em>. <em>J. Bacteriol.</em> <bold>191</bold>, 5147–5158 (2009)
  91. Shimada T., Takada H., Yamamoto K., Ishihama A.: Expanded roles of two-component response regulator OmpR in <em>Escherichia coli</em>: genomic SELEX search for novel regulation targets. <em>Genes Cells.</em> <bold>20</bold>, 915–931 (2015)
  92. Soncini F.C., Groisman E.A.: Two-component regulatory systems can interact to process multiple environmental signals. <em>J. Bacteriol.</em> <bold>178</bold>, 6796–6801 (1996)
  93. Storz G., Vogel J., Wassarman K.: Regulation by small RNAs in bacteria: expanding frontiers. <em>Mol. Cell.</em> <bold>43</bold>, 880–891 (2011)
  94. Sultan S.Z., Silva A., Benitez J.: The PhoB regulatory system modulates biofilm formation and stress response in El Tor biotype <em>Vibrio cholerae</em>. <em>FEMS Microbiol. Lett.</em> <bold>302</bold>, 22–31 (2010)
  95. Tamayo R., Tischler A. Camilli A.: The EAL domain protein VieA is a cyclic diguanylate phosphodiesterase. <em>J. Biol. Chem.</em> <bold>280</bold>, 33324–33330 (2005)
  96. Taylor R.K., Miller V., Furlong D., Mekalanos J.: Use of <em>phoA</em> gene fusions to identify a pilus colonization factor coordinately regulated with cholera toxin. <em>Proc. Natl. Acad. Sci. USA</em>, <bold>84</bold>, 2833–2837 (1987)
  97. Teschler J.K., Cheng A., Yildiz F.: The two-component signal transduction system VxrAB positively regulates <em>Vibrio cholerae</em> biofilm formation. <em>J. Bacteriol.</em> <bold>199</bold>, (2017)
  98. Tischler A.D., Camilli A.: Cyclic diguanylate (c-di-GMP) regulates <em>Vibrio cholerae</em> biofilm formation. <em>Mol. Microbiol.</em> <bold>53</bold>, 857–869 (2004)
  99. Tsou A.M., Liu Z., Cai T., Zhu J.: The VarS/VarA two-component system modulates the activity of the <em>Vibrio cholerae</em> quorum-sensing transcriptional regulator HapR. <em>Microbiology</em> (Reading), <bold>157</bold>, 1620–1628 (2011)
  100. Udekwu K.I., Darfeuille F., Vogel J., Reimegard J., Holmqvist E., Wagner E.: Hfq-dependent regulation of OmpA synthesis is mediated by an antisense RNA. <em>Genes Dev.</em> <bold>19</bold>, 2355–2366 (2005)
  101. Urbanowicz P., Gniadkowski M.: “Ciężkozbrojny” <em>Pseudomonas aeruginosa</em>: mechanizmy lekooporności i ich tło genetyczne. <em>Kosmos,</em> <bold>66</bold>, 11–29 (2017)
  102. Valverde C., Haas D.: Small RNAs controlled by two-component systems. <em>Adv. Exp. Med. Biol.</em> <bold>631</bold>, 54–79 (2008)
  103. Vecerek B., Moll I., Blasi U.: Control of Fur synthesis by the non-coding RNA RyhB and iron-responsive decoding. <em>EMBO J.</em><bold>26</bold>, 965–975 (2007)
  104. Vestby L.K., Gronseth T., Simm R., Nesse L.: Bacterial biofilm and its role in the pathogenesis of disease. <em>Antibiotics</em> (Basel), <bold>9</bold>, 2, (2020)
  105. Viegas S.C., Arraiano C.M.: Regulating the regulators: How ribonucleases dictate the rules in the control of small non-coding RNAs. <em>RNA Biol.</em> <bold>5</bold>, 4, 230–243 (2008)
  106. Vogel J., Bartels V., Tang T., Churakov G., Slagter-Jager J., Huttenhofer A., Wagner E.: RNomics in <em>Escherichia coli</em> detects new sRNA species and indicates parallel transcriptional output in bacteria. <em>Nucleic Acids Res.</em> <bold>31</bold>, 6435–6443 (2003)
  107. Wagner E.G.H., Altuvia S., Romby P.: Antisense RNAs in bacteria and their genetic elements. <em>Adv. Genet.</em> <bold>46</bold>, 361–398 (2002)
  108. Wassarman K.M., Repoila F., Rosenow C., Storz G., Gottesman S.: Identification of novel small RNAs using comparative genomics and microarrays. <em>Genes Dev.</em> <bold>15</bold>, 1637–1651 (2001)
  109. Wassarman K.M.: Small RNAs in bacteria: diverse regulators of gene expression in response to environmental changes. <em>Cell</em>, <bold>109</bold>, 141–144 (2002)
  110. Watnick P.I., Kolter R.: Steps in the development of a <em>Vibrio cholerae</em> El Tor biofilm. <em>Mol. Microbiol.</em> <bold>34</bold>, 586–595 (1999)
  111. Weiser J.N., Gotschlich E.C.: Outer membrane protein A (OmpA) contributes to serum resistance and pathogenicity of <em>Escherichia coli</em> K-1. <em>Infect. Immun.</em> <bold>59</bold>, 2252–2258 (1991)
  112. Wen Y., Kim I., Son J., Lee B., Kim K.: Iron and quorum sensing coordinately regulate the expression of vulnibactin biosynthesis in <em>Vibrio vulnificus</em>. <em>J. Biol. Chem.</em> <bold>287</bold>, 26727–26739 (2012)
  113. Wen Y., Kim I., Kim K.: Iron- and quorum-sensing signals converge on small quorum-regulatory RNAs for coordinated regulation of virulence factors in <em>Vibrio vulnificus</em>. <em>J. Biol. Chem.</em> <bold>291</bold>, 14213–14230 (2016)
  114. Wright A.C., Simpson L., Oliver J.: Role of iron in the pathogenesis of <em>Vibrio vulnificus</em> infections. <em>Infect. Immun.</em> <bold>34</bold>, 503–507 (1981)
  115. Yi L., Li J., Liu B., Wang Y.: Advances in research on signal molecules regulating biofilms. <em>World J. Microbiol. Biotechnol.</em> <bold>35</bold>, 130 (2019)
  116. Yildiz F.H., Dolganov N., Schoolnik G.: VpsR, a member of the response regulators of the two-component regulatory systems, is required for expression of <em>vps</em> biosynthesis genes and EPS(ETr)-associated phenotypes in <em>Vibrio cholerae</em> O1 El Tor. <em>J. Bacteriol.</em> <bold>183</bold>, 1716–1726 (2001)
  117. Zhang A., Schu D., Tjaden B., Storz G., Gottesman S.: Mutations in interaction surfaces differentially impact <em>E. coli</em> Hfq association with small RNAs and their mRNA targets. <em>J. Mol. Biol.</em> <bold>425</bold>, 3678–3697 (2013)
  118. Zhu J., Miller M., Vance R., Dziejman M., Bassler B., Mekalanos J.: Quorum-sensing regulators control virulence gene expression in <em>Vibrio cholerae</em>. <em>Proc. Natl. Acad. Sci. USA.</em> <bold>99</bold>, 3129–3134 (2002)
DOI: https://doi.org/10.2478/am-2022-020 | Journal eISSN: 2545-3149 | Journal ISSN: 0079-4252
Language: English, Polish
Page range: 191 - 204
Submitted on: Apr 1, 2022
Accepted on: Sep 1, 2022
Published on: Nov 30, 2022
Published by: Polish Society of Microbiologists
In partnership with: Paradigm Publishing Services
Publication frequency: 4 times per year

© 2022 Karolina Jaworska, Weronika Staniszewska, Patrycja Gomza, Paula Rożen, Katarzyna Brzostek, Adrianna Raczkowska, published by Polish Society of Microbiologists
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.