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Genes encoding proteins regulating fatty acid metabolism and cellular response to lipids are differentially expressed in porcine luminal epithelium during long-term culture

Medical Journal of Cell Biology
Volume 7 (2019): Issue 2 (September 2019)
By:
Open Access
|Oct 2019

Figures & Tables

Figure 1

Heat map representation of differentially expressed genes belonging to the to “cellular lipid metabolic process”, “cellular response to lipid” and “fatty acid beta-oxidation” GO BP terms. Arbitrary signal intensity acquired from microarray analysis is represented by colours (green, higher; red, lower expression). Log2 signal intensity values for any single gene were resized to Row Z-Score scale (from -2, the lowest expression to +2, the highest expression for single gene)
Heat map representation of differentially expressed genes belonging to the to “cellular lipid metabolic process”, “cellular response to lipid” and “fatty acid beta-oxidation” GO BP terms. Arbitrary signal intensity acquired from microarray analysis is represented by colours (green, higher; red, lower expression). Log2 signal intensity values for any single gene were resized to Row Z-Score scale (from -2, the lowest expression to +2, the highest expression for single gene)

Figure 2

The circle plot showing the differently expressed genes and z-score of the “cellular lipid metabolic process”, “cellular response to lipid” and “fatty acid beta-oxidation” GO BP terms. The outer circle shows a scatter plot for each term of the fold change of the assigned genes. Green circles display up- regulation and red ones down- regulation. The inner circle shows the z-score of each GO BP term. The width of the each bar corresponds to the number of genes within GO BP term and the color corresponds to the z-score
The circle plot showing the differently expressed genes and z-score of the “cellular lipid metabolic process”, “cellular response to lipid” and “fatty acid beta-oxidation” GO BP terms. The outer circle shows a scatter plot for each term of the fold change of the assigned genes. Green circles display up- regulation and red ones down- regulation. The inner circle shows the z-score of each GO BP term. The width of the each bar corresponds to the number of genes within GO BP term and the color corresponds to the z-score

Figure 3

The representation of the mutual relationship of differently expressed genes that belongs to the “cellular lipid metabolic process”, “cellular response to lipid” and “fatty acid beta-oxidation” GO BP terms. The ribbons indicate which gene belongs to which categories. The middle circle represents logarithm from fold change (LogFC) between D7/D1, D15/D1 and D30/D1 respectively. The color of each block corresponds to the LogFC of each gene (green – up-regulated, red – down-regulated). The genes were sorted by logFC from most to least changed gene
The representation of the mutual relationship of differently expressed genes that belongs to the “cellular lipid metabolic process”, “cellular response to lipid” and “fatty acid beta-oxidation” GO BP terms. The ribbons indicate which gene belongs to which categories. The middle circle represents logarithm from fold change (LogFC) between D7/D1, D15/D1 and D30/D1 respectively. The color of each block corresponds to the LogFC of each gene (green – up-regulated, red – down-regulated). The genes were sorted by logFC from most to least changed gene

Figure 4

Heatmap showing the gene occurrence between differently expressed genes that belongs to the “cellular lipid metabolic process”, “cellular response to lipid” and “fatty acid beta-oxidation” GO BP terms. The yellow color is associated with gene occurrence in the GO Term. The intensity of the color is corresponding to amount of GO BP terms that each gene belongs to
Heatmap showing the gene occurrence between differently expressed genes that belongs to the “cellular lipid metabolic process”, “cellular response to lipid” and “fatty acid beta-oxidation” GO BP terms. The yellow color is associated with gene occurrence in the GO Term. The intensity of the color is corresponding to amount of GO BP terms that each gene belongs to

Figure 5

STRING-generated interaction occurrence between differently expressed genes that belongs to the “cellular lipid metabolic process”, “cellular response to lipid” and “fatty acid beta-oxidation” GO BP terms. The intensity of the edges reflects the strength of interaction score
STRING-generated interaction occurrence between differently expressed genes that belongs to the “cellular lipid metabolic process”, “cellular response to lipid” and “fatty acid beta-oxidation” GO BP terms. The intensity of the edges reflects the strength of interaction score

Figure 6

Functional interaction (FI) between differently expressed genes that belongs to the “cellular lipid metabolic process”, “cellular response to lipid” and “fatty acid beta-oxidation” GO BP terms. In following figure “->” stands for activating/catalyzing, “-|” for inhibition, “-” for FIs extracted from complexes or inputs, and “---” for predicted FIs
Functional interaction (FI) between differently expressed genes that belongs to the “cellular lipid metabolic process”, “cellular response to lipid” and “fatty acid beta-oxidation” GO BP terms. In following figure “->” stands for activating/catalyzing, “-|” for inhibition, “-” for FIs extracted from complexes or inputs, and “---” for predicted FIs

Gene symbols, fold changes in expression, corrected p values and Entrez gene IDs of studied genes

GENE SYMBOLFOLD CHANGE D7/D1FOLD CHANGE D15/D1FOLD CHANGE D30/D1ADJUSTED P VALUE D7/D1ADJUSTED P VALUE D15/D1ADJUSTED P VALUE D30/D1
IL240,0833710,0621920,0713999,50E-063,21E-061,76E-06
CRABP20,1080460,0846380,0568013,11E-051,05E-052,84E-06
CYP24A10,1491690,2942760,0395842,69E-050,0001367,91E-07
SNAI20,1837660,1345210,1300790,0004110,0001297,85E-05
SPTLC30,1917860,5024610,3431723,75E-050,0016660,000124
KLF40,2054890,0899040,0574594,71E-053,93E-061,01E-06
MUC10,2407260,034740,021214,67E-059,76E-072,44E-07
CXCL100,2417130,4470190,3316340,0021650,0259030,004916
ERBB30,2702080,123880,1179984,67E-053,53E-061,48E-06
FKBP40,2912150,2911140,1922724,73E-052,82E-054,24E-06
ARSK5,7667114,5075231,321850,0001231,00E-051,73E-06
KITLG5,9755576,4783993,3021641,01E-053,68E-061,88E-05
P2RX76,1651428,5220425,7953982,69E-056,72E-061,03E-05
ABCA16,3133965,55674710,335583,95E-053,12E-054,36E-06
ACSS26,3497182,5033935,620937,45E-069,49E-052,39E-06
ACADL6,55257313,0754516,703856,68E-059,39E-063,46E-06
TNC6,572678,3523238,7734671,83E-054,91E-062,42E-06
PPARD9,2009736,8265225,6029912,25E-052,24E-052,49E-05
FADS39,51645510,2501912,300644,27E-061,47E-064,44E-07
LIPG36,546919,6781539,018012,50E-061,39E-062,57E-07
DOI: https://doi.org/10.2478/acb-2019-0008 | Journal eISSN: 2544-3577
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Language: English
Page range: 58 - 65
Submitted on: Aug 11, 2019
Accepted on: Aug 28, 2019
Published on: Oct 12, 2019
Published by: Foundation for Cell Biology and Molecular Biology
In partnership with: Paradigm Publishing Services
Publication frequency: 4 times per year
Keywords:
porcine oviduct epithelial cells,
fatty acids,
maturation (IVM),
microarrays
Related subjects:
Life sciences,
Molecular biology,
Biochemistry

© 2019 Magdalena Kulus, Blanka Borowiec, Małgorzata Popis, Piotr Celichowski, Michal Jeseta, Dorota Bukowska, Hanna Piotrowska-Kempisty, Małgorzata Bruska, Maciej Zabel, Michał Nowicki, Bartosz Kempisty, Paweł Antosik, published by Foundation for Cell Biology and Molecular Biology
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

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