Have a personal or library account? Click to login
An overview of the use of SNaPshot for predicting blood group antigens Cover

An overview of the use of SNaPshot for predicting blood group antigens

By: F.R.M. Latini and  L.M. Castilho  
Paid access
|Oct 2019

References

  1. Syvänen AC. From gels to chips: “minisequencing” primer extension for analysis of point mutations and single nucleotide polymorphisms. Hum Mutat 1999;13:1–10.10.1002/(SICI)1098-1004(1999)13:1<;1::AID-HUMU1>3.0.CO;2-I
  2. Jalanko A, Kere J, Savilahti E, et al. Screening for defined cystic fibrosis mutations by solid-phase minisequencing. Clin Chem 1992;38:39–43.10.1093/clinchem/38.1.39
  3. Syvänen AC. Detection of point mutations in human genes by the solid-phase minisequencing method. Clin Chim Acta 1994;226:225–36.10.1016/0009-8981(94)90217-8
  4. Syvänen AC, Aalto-Setälä K, Harju L, et al. A primer-guided nucleotide incorporation assay in the genotyping of apolipoprotein E. Genomics 1990;8:684–92.10.1016/0888-7543(90)90255-S
  5. Syvänen AC, Ikonen E, Manninen T, et al. Convenient and quantitative determination of the frequency of a mutant allele using solid-phase minisequencing: application to aspartylglucosaminuria in Finland. Genomics 1992;12:590–5.10.1016/0888-7543(92)90452-X
  6. Syvänen AC, Söderlund H, Laaksonen E, et al. N-ras gene mutations in acute myeloid leukemia: accurate detection by solid-phase minisequencing. Int J Cancer 1992;50:713–8.10.1002/ijc.2910500508
  7. Kuppuswamy MN, Hoffmann JW, Kasper CK, et al. Single nucleotide primer extension to detect genetic diseases: experimental application to hemophilia B (factor IX) and cystic fibrosis genes. Proc Natl Acad Sci U S A 1991;88:1143–7.10.1073/pnas.88.4.1143
  8. Pastinen T, Partanen J, Syvänen AC. Multiplex, fluorescent, solid-phase minisequencing for efficient screening of DNA sequence variation. Clin Chem 1996;42:1391–7.10.1093/clinchem/42.9.1391
  9. Shumaker JM, Metspalu A, Caskey CT. Mutation detection by solid phase primer extension. Hum Mutat 1996;7:346–54.10.1002/(SICI)1098-1004(1996)7:4<;346::AID-HUMU9>3.0.CO;2-6
  10. Tully G, Sullivan KM, Nixon P, et al. Rapid detection of mitochondrial sequence polymorphisms using multiplex solid-phase fluorescent minisequencing. Genomics 1996;34:107–13.10.1006/geno.1996.0247
  11. Latini FR, Gazito D, Arnoni CP, et al. A new strategy to identify rare blood donors: single polymerase chain reaction multiplex SNaPshot reaction for detection of 16 blood group alleles. Blood Transfus 2014;12(Suppl 1):S256–63.
  12. Boccoz SA, Blum LJ, Marquette CA. DNA biosensor/biochip for multiplex blood group genotyping. Methods 2013;64:241–9.10.1016/j.ymeth.2013.09.01124080420
  13. Jungbauer C. Routine use of DNA testing for red cell antigens in blood centres. Transfus Apher Sci 2011;45:61–8.10.1016/j.transci.2011.06.00421741314
  14. Veldhuisen B, van der Schoot CE, de Haas M. Blood group genotyping: from patient to high-throughput donor screening. Vox Sang 2009;97:198–206.10.1111/j.1423-0410.2009.01209.x19548962
  15. St-Louis M. Molecular blood grouping of donors. Transfus Apher Sci 2014;50:175–82.10.1016/j.transci.2014.02.01224656492
  16. Di Cristofaro J, Silvy M, Chiaroni J, Bailly P. Single PCR multiplex SNaPshot reaction for detection of eleven blood group nucleotide polymorphisms: optimization, validation, and one year of routine clinical use. J Mol Diagn 2010;12:453–60.10.2353/jmoldx.2010.090222289362920431033
  17. Doi Y, Yamamoto Y, Inagaki S, et al. A new method for ABO genotyping using a multiplex single-base primer extension reaction and its application to forensic casework samples. Leg Med (Tokyo) 2004;6:213–23.10.1016/j.legalmed.2004.05.00515363446
  18. Ferri G, Bini C, Ceccardi S, Pelotti S. ABO genotyping by minisequencing analysis. Transfusion 2004;44:943–4.10.1111/j.1537-2995.2004.00381.x15157266
  19. Ferri G, Pelotti S. Multiplex ABO genotyping by minisequencing. Methods Mol Biol 2009;496:51–8.10.1007/978-1-59745-553-4_518839104
  20. Inagaki S, Yamamoto Y, Doi Y, et al. A new 39-plex analysis method for SNPs including 15 blood group loci. Forensic Sci Int 2004;144:45–57.10.1016/j.forsciint.2004.03.00515240020
  21. Palacajornsuk P, Halter C, Isakova V, et al. Detection of blood group genes using multiplex SNaPshot method. Transfusion 2009;49:740–9.10.1111/j.1537-2995.2008.02053.x19170993
  22. Silvy M, Di Cristofaro J, Beley S, et al. Identification of RHCE and KEL alleles in large cohorts of Afro-Caribbean and Comorian donors by multiplex SNaPshot and fragment assays: a transfusion support for sickle cell disease patients. Br J Haematol 2011;154:260–70.10.1111/j.1365-2141.2011.08691.x21623766
  23. Silvy M, Simon S, Gouvitsos J, et al. Weak D and DEL alleles detected by routine SNaPshot genotyping: identification of four novel RHD alleles. Transfusion 2011;51:401–11.10.1111/j.1537-2995.2010.02830.x20723165
  24. Mazières S, Temory SA, Vasseur H, et al. Blood group typing in five Afghan populations in the North Hindu–Kush region: implications for blood transfusion practice. Transfus Med 2013;23:167–74.10.1111/tme.1203823578195
  25. Moulds JM. Future of molecular testing for red blood cell antigens. Clin Lab Med 2010;30(2):419–29.10.1016/j.cll.2010.02.00420513560
  26. Ballif BA, Helias V, Peyrard T, et al. Disruption of SMIM1 causes the Vel– blood type. EMBO Mol Med 2013;5:751–61.10.1002/emmm.201302466366231723505126
  27. Cvejic A, Haer-Wigman L, Stephens JC, et al. SMIM1 underlies the Vel blood group and influences red blood cell traits. Nat Genet 2013;45:542–5.10.1038/ng.2603417928223563608
  28. Storry JR, Joud M, Christophersen MK, et al. Homozygosity for a null allele of SMIM1 defines the Vel-negative blood group phenotype. Nat Genet 2013;45:537–41.10.1038/ng.260023563606
  29. Babol-Pokora K, Berent J. SNP-minisequencing as an excellent tool for analysing degraded DNA recovered from archival tissues. Acta Biochim Pol 2008;55:815–9.10.18388/abp.2008_3045
  30. Jungbauer C, Hobel CM, Schwartz DW, Mayr WR. High-throughput multiplex PCR genotyping for 35 red blood cell antigens in blood donors. Vox Sang 2011;102:234–42.10.1111/j.1423-0410.2011.01542.x22098427
DOI: https://doi.org/10.21307/immunohematology-2019-070 | Journal eISSN: 1930-3955 | Journal ISSN: 0894-203X
Language: English
Page range: 53 - 57
Published on: Oct 26, 2019
In partnership with: Paradigm Publishing Services
Publication frequency: 4 issues per year

© 2019 F.R.M. Latini, L.M. Castilho, published by American National Red Cross
This work is licensed under the Creative Commons License.