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Whole-genome draft assembly of Populus tremula x P. alba clone INRA 717-1B4 Cover

Whole-genome draft assembly of Populus tremula x P. alba clone INRA 717-1B4

Open Access
|Oct 2017

References

  1. Christe C, Stölting KN, Bresadola L, Fussi B, Heinze B, Wegmann D, Lexer C (2016) Selection against recombinant hybrids maintains reproductive isolation in hybridizing Populus species despite F1 fertility and recurrent gene flow. Mol Ecol 25 (11):2482-2498. http://dx.doi.org/10.1111/mec.1358710.1111/mec.1358726880192
  2. Dickmann D, Stuart KW (1993) The culture of poplars in eastern North America. Michigan: Michigan State University, 1st edition (1983), 168 p
  3. Eckenwalder JE (1996) Systematics and evolution of Populus. In: Stettler RF, Bradshaw Jr. HD, Heilman PE, Hinckley TM (eds) Biology of Populus and its implications for management and conservation. Ottawa, Ontario, Canada: NRC Research Press, National Research Council of Canada, pp 7–32, ISBN 0660165066, 9780660165066
  4. Fladung M, Altosaar I, Bartsch D, Baucher M, Boscaleri F, Gallardo F, Häggman H, Hoenicka H, Nielsen K, Paffetti D, Séguin A, Stotzky G, Vettori C (2012) European discussion forum on transgenic tree biosafety. Nature Biotechnology 30 (1): 37-38. http://dx.doi.org/10.1038/nbt.207810.1038/nbt.207822231091
  5. Geraldes A, Hefer CA, Capron A, Kolosova N, Martinez-Nuñez F, Soolanayakanahally RY, Stanton B, Guy RD, Mansfield SD, Douglas CJ, Cronk QC (2015) Recent Y chromosome divergence despite ancient origin of dioecy in poplars (Populus). Mol Ecol 24 (13):3243-3256. http://dx.doi.org/10.1111/mec.1312610.1111/mec.1312625728270
  6. Gurevich A, Saveliev V, Vyahhi N, Tesler G (2013) QUAST: quality assessment tool for genome assemblies. Bioinformatics 29 (8):1072-1107. http://dx.doi.org/10.1093/bioinformatics/btt08610.1093/bioinformatics/btt086362480623422339
  7. Jansson S, Douglas CJ (2007) Populus: A model system for plant biology. Annu Rev Plant Biol 58:435-458. http://dx.doi.org/10.1146/annurev.arplant.58.032806.10395610.1146/annurev.arplant.58.032806.10395617280524
  8. Kersten B, Faivre Rampant P, Mader M, Le Paslier MC, Bounon R, Berard A, Vettori C, Schroeder H, Leple JC, Fladung M (2016) Genome sequences of Populus tremula chloroplast and mitochondrion: Implications for holistic poplar breeding. PLoS One 11 (1):e0147209. http://dx.doi.org/10.1371/journal.pone.014720910.1371/journal.pone.0147209472304626800039
  9. Kersten B, Pakull B, Fladung M (2017) Genomics of sex determination in dioecious trees and woody plants. Trees – Structure and Function 31 (4):1113–1125. http://dx.doi.org/10.1007/s00468-017-1525-710.1007/s00468-017-1525-7
  10. Ky CL, Barre P, Lorieux M, Trouslot P, Akaffou S, Louarn J, Charrier A, Hamon S, Noirot M (2000) Interspecific genetic linkage map, segregation distortion and genetic conversion in coffee (Coffea sp.). Theor Appl Genet 101 (4):669-676. http://dx.doi.org/10.1007/s00122005152910.1007/s001220051529
  11. Lemoine M (1973) Amélioration des peupliers de la section Leuce sur sols hydromorphes [Thesis]: University of Nancy, France
  12. Leplé JC, Brasileiro ACM, Michel MF, Delmotte F, Jouanin L (1992) Transgenic poplars: expression of chimeric genes using four different constructs. Plant Cell Rep 11:137-141. http://dx.doi.org/10.1007/BF0023216610.1007/BF0023216624213546
  13. Licht LA, Isebrands JG (2005) Linking phytoremediated pollutant removal to biomass economic opportunities. Biomass Bioenergy 28 (2):203-218. http://dx.doi.org/10.1016/j.biombioe.2004.08.01510.1016/j.biombioe.2004.08.015
  14. Ma T, Wang J, Zhou G, Yue Z, Hu Q, Chen Y, Liu B, et al. (2013) Genomic insights into salt adaptation in a desert poplar. Nat Commun 4:2797. http://dx.doi.org/10.1038/ncomms379710.1038/ncomms379724256998
  15. Pilate G, Dejardin A, Leple JC (2012) Chapter 1 - Field trials with lignin-modified transgenic trees. In: Lise J, Catherine L (eds) Advances in Botanical Research. Volume 61 (Lignins). London, Oxford, Boston, New York, San Diego: Academic Press, pp 1-36. ISBN 0124160239
  16. Pinosio S, Giacomello S, Faivre-Rampant P, Taylor G, Jorge V, Le Paslier MC, Zaina G, Bastien C, Cattonaro F, Marroni F, Morgante M (2016) Characterization of the poplar pan-genome by genome-wide identification of structural variation. Mol Biol Evol 33 (10):2706-2719. http://dx.doi.org/10.1093/molbev/msw16110.1093/molbev/msw161502626227499133
  17. Sjödin A, Street NR, Sandberg G, Gustafsson P, Jansson S (2009) The Populus Genome Integrative Explorer (PopGenIE): a new resource for exploring the Populus genome New Phytol 182 (4):1013-1025. http://dx.doi.org/10.1111/j.1469-8137.2009.02807.x10.1111/j.1469-8137.2009.02807.x19383103
  18. Slavov GT, Zhelev P (2010) Salient biological features, systematics, and genetic variation of Populus. In: Jansson S, Bhalerao R, Groover A (eds) Genetics and Genomics of Populus, Plant Genetics and Genomics: Crops and Models. Berlin, Heidelberg, New York: Springer, pp 15-38, ISBN 978-1-4419-1540-5 (Print) 978-1-4419-1541-2 (Online)
  19. Stanton BJ, Neale DB, Li S (2010) Populus breeding: From the classical to the genomic approach. In: Jansson S, Bhalerao R, Groover A (eds) Genetics and Genomics of Populus. Dordrecht, Netherlands: Springer Science+Business Media, pp 309-34810.1007/978-1-4419-1541-2_14
  20. Stettler RF, Bradshaw Jr. HD, Heilman PE, Hinckley TM (1996) Biology of Populus and its implications for management and conservation. Ottawa, Ontario, Canada: NRC Research Press, National Research Council of Canada, 539 p, ISBN 0660165066, 9780660165066
  21. Tuskan GA, DiFazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, et al. (2006) The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 313 (5793):1596-1604. http://dx.doi.org/10.1126/science.112869110.1126/.1128691
  22. Walle IV, Van Camp N, Van de Casteele L, Verheyen K, Lemeur R (2007) Short-rotation forestry of birch, maple, poplar and willow in Flanders (Belgium) II. Energy production and CO2 emission reduction potential. Biomass Bioenergy 31 (5):276-283. http://dx.doi.org/10.1016/j.biombioe.2007.01.01910.1016/j.biombioe.2007.01.019
  23. Walter C, Fladung M, Boerjan W (2010) The 20-year environmental safety record of GM trees. Nat Biotechnol 28 (7):656-658. http://dx.doi.org/10.1038/nbt0710-65610.1038/nbt0710-65620622831
  24. Wullschleger SD, Jansson S, Taylor G (2002) Genomics and forest biology: Populus emerges as the perennial favorite. Plant Cell 14 (11):2651-2655. http://dx.doi.org/10.1105/tpc.14112010.1105/tpc.14112054029512417692
  25. Zhou X, Jacobs TB, Xue LJ, Harding SA, Tsai CJ (2015) Exploiting SNPs for biallelic CRISPR mutations in the outcrossing woody perennial Populus reveals 4-coumarate:CoA ligase specificity and redundancy. New Phytol 208 (2):298-301. http://dx.doi.org/10.1111/nph.1347010.1111/nph.1347025970829
DOI: https://doi.org/10.1515/sg-2016-0019 | Journal eISSN: 2509-8934 | Journal ISSN: 0037-5349
Language: English
Page range: 74 - 79
Published on: Oct 27, 2017
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year

© 2017 Malte Mader, Marie-Christine Le Paslier, Rémi Bounon, Aurélie Bérard, Patricia Faivre Rampant, Matthias Fladung, Jean-Charles Leplé, Birgit Kersten, published by Johann Heinrich von Thünen Institute
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.