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Detecting differential viability selection between environments by analysis of compositional differentiation at different levels of genetic integration Cover

Detecting differential viability selection between environments by analysis of compositional differentiation at different levels of genetic integration

Silvae Genetica
Volume 65 (2016): Issue 2 (December 2016)
By: Elizabeth M. Gillet,  Martin Ziehe and  Hans-Rolf Gregorius  
Open Access
|Oct 2017

References

  1. Antao T, A Lopes, RJ Lopes, A Beja-Pereira and G Luikart (2008) LOSITAN: a workbench to detect molecular adaptation based on a Fst-outlier method. BMC Bioinformatics 9:323. https://dx.doi.org/10.1186/1471-2105-9-32310.1186/1471-2105-9-323
    Open DOISearch in Google ScholarBack to article
  2. Beaumont MA and RA Nichols (1996) Evaluating loci for use in the genetic analysis of population structure. Proceedings of the Royal Society B: Biological Sciences 263(1377)1619-1626. https://dx.doi.org/10.1098/rspb.1996.023710.1098/rspb.1996.0237
    Open DOISearch in Google ScholarBack to article
  3. Flanagan SP and AG Jones (2015) Identifying signatures of sexual selection using genomewide selection components analysis. Ecology and Evolution 5(13):2722-2744. https://dx.doi.org/10.1002/ece3.154610.1002/ece3.1546
    Open DOISearch in Google ScholarBack to article
  4. Foll M and O Gaggiotti (2008) A genome-scan method to identify selected loci appropriate for both dominant and codominant markers: a Bayesian perspective. Genetics 180(2):977-993.10.1534/genetics.108.092221
    Search in Google ScholarBack to article
  5. Gillet EM (2013) DifferInt : compositional differentiation among populations at three levels of genetic integration. Molecular Ecology Resources 13(5):953-964. https://dx.doi.org/10.1111/1755-0998.1214510.1111/1755-0998.12145
    Open DOISearch in Google ScholarBack to article
  6. Gillet EM and H-R Gregorius (2008) Measuring differentiation among populations at different levels of genetic integration. BMC Genetics 9:60.10.1186/1471-2156-9-60
    Open DOISearch in Google ScholarBack to article
  7. Gillet EM, H-R Gregorius and M Ziehe (2004) May inclusion of trait differences in genetic cluster analysis alter our views? Forest Ecology and Management 197(1-3):149-158.10.1016/j.foreco.2004.05.010
    Search in Google ScholarBack to article
  8. Gregorius H-R (1974) On the concept of genetic distance between populations based on gene frequencies. In: Department of Forest Genetics, Royal College of Forestry, Stockholm (ed) Proceedings of the IRUFRO Joint Meeting of Working Parties on Population and Ecological Genetics, Breeding Theory and Progeny Testing, S.02-04. Stockholm, pp 17-22. http://www.uni-goettingen.de/de/document/download/9afb2d3c2d8aee7036cc05d475cd5a64.pdf/017-Gregorius-IUFRO-1974.pdf
    Search in Google ScholarBack to article
  9. Gregorius H-R (1984) A unique genetic distance. Biometrical Journal 26(1):13-18. https://dx.doi.org/10.1002/bimj.471026010310.1002/bimj.4710260103
    Open DOISearch in Google ScholarBack to article
  10. Gregorius H-R (2011) The analysis of association between traits when differences between trait states matter. Acta Biotheoretica 59(3-4):213-229. https://dx.doi.org/10.1007/s10441-011-9138-910.1007/s10441-011-9138-9
    Open DOISearch in Google ScholarBack to article
  11. Gregorius H-R (1991) On the concept of effective number. Theoretical Population Biology 40(2):269-283.10.1016/0040-5809(91)90056-L
    Open DOISearch in Google ScholarBack to article
  12. Gregorius H-R, B Degen and A König (2007) Problems in the analysis of genetic differentiation among populations – a case study in Quercus robur. Silvae Genetica 56(3-4):190-199. https://www.thuenen.de/media/institute/fg/PDF/Silvae_Genetica/2007/Vol._56_Heft_3-4/56_3-4_190.pdf10.1515/sg-2007-0029
    Search in Google ScholarBack to article
  13. Gregorius H-R, EM Gillet and M Ziehe (2003) Measuring differences of trait distributions between populations. Biometrical Journal 45(8):959-973. https://dx.doi.org/10.1002/bimj.20039006310.1002/bimj.200390063
    Search in Google ScholarBack to article
  14. Gregorius H-R and JH Roberds (1986) Measurement of genetical differentiation among subpopulations. Theoretical and Applied Genetics 71(6):826-834. https://dx.doi.org/10.1007/BF0027642510.1007/BF0027642524247710
    Open DOISearch in Google ScholarBack to article
  15. Hedrick PW (2005) A standardized genetic differentiation measure. Evolution 59(8):1633-1638. https://dx.doi.org/10.1111/j.0014-3820.2005.tb01814.x10.1111/j.0014-3820.2005.tb01814.x
    Search in Google ScholarBack to article
  16. Hufford KM and JLH Hamrick (2003) Viability selection at three early life stages of the tropical tree Platypodium elegans (Fabaceae, Papilionoideae). Evolution 57(3):518-526. https://dx.doi.org/10.1111/j.0014-3820.2003.tb01543.x10.1111/j.0014-3820.2003.tb01543.x12703941
    Open DOISearch in Google ScholarBack to article
  17. Jost L (2008) GST and its relatives do not measure differentiation. Molecular Ecology 17(18):4015-4026. https://dx.doi.org/10.1111/j.1365-294X.2008.03887.x10.1111/j.1365-294X.2008.03887.x19238703
    Open DOISearch in Google ScholarBack to article
  18. Lotterhos KE and MC Whitlock (2014) Evaluation of demographic history and neutral parameterization on the performance of FST outlier tests. Molecular Ecology 23(9):2178-2192. https://dx.doi.org/10.1111/mec.1272510.1111/mec.12725422876324655127
    Open DOISearch in Google ScholarBack to article
  19. Müller-Starck G (1993) Auswirkungen von Umweltbelastungen auf genetische Strukturen von Waldbeständen am Beispiel der Buche (Fagus sylvatica L.). Schriften aus der Forstlichen Fakultät der Universität Göttingen und der Niedersächsischen Forstlichen Versuchsanstalt, Bd. 112. Frankfurt am Main, Germany: J.D. Sauerländer’s Verlag, 163 p.
    Search in Google ScholarBack to article
  20. Nei M (1973) Analysis of gene diversity in subdivided populations. Proceedings of the National Academy of Sciences U.S.A. 70(12):3321-3323. http://www.pnas.org/content/70/12/3321.abstract10.1073/pnas.70.12.33214272284519626
    Search in Google ScholarBack to article
  21. Nosil P, DJ Funk and D Ortiz-Barrientos (2009) Divergent selection and heterogeneous genomic divergence. Molecular Ecology 18(3):375-402. https://dx.doi.org/10.1111/j.1365-294X.2008.03946.x10.1111/j.1365-294X.2008.03946.x19143936
    Open DOISearch in Google ScholarBack to article
  22. Simpson EH (1949) Measurement of diversity. Nature 163(30 April 1949):688. https://dx.doi.org/10.1038/163688a010.1038/163688a0
    Open DOISearch in Google ScholarBack to article
  23. Wright S (1978) Evolution and the Genetics of Populations, Vol. 4: Variability Within and Among Natural Populations. Chicago, The University of Chicago Press, 590 p, ISBN 9780226910529
    Search in Google ScholarBack to article
DOI: https://doi.org/10.1515/sg-2016-0013 | Journal eISSN: 2509-8934 | Journal ISSN: 0037-5349
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Language: English
Page range: 17 - 29
Published on: Oct 27, 2017
Published by: Johann Heinrich von Thünen Institute
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year
Keywords:
Compositional differentiation,
gene association,
genetic distance,
genetic integration,
genetic variation,
viability selection,
European beech (Fagus sylvatica L.)
Related subjects:
Life sciences,
Molecular biology,
Genetics,
Biotechnology,
Plant science

© 2017 Elizabeth M. Gillet, Martin Ziehe, Hans-Rolf Gregorius, published by Johann Heinrich von Thünen Institute
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

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