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Estimating coancestry within open-pollinated progenies of a dioecious species: the case study of Myracrodruon urundeuva Cover

Estimating coancestry within open-pollinated progenies of a dioecious species: the case study of Myracrodruon urundeuva

Silvae Genetica
Volume 61 (2012): Issue 1-6 (December 2012)
By: M. A. Moraes,  A. P. S. Gaino,  M. L. T. Moraes,  M. L. M. Freitas and  A. M. Sebbenn  
Open Access
|Aug 2017

References

  1. AUSTERLITZ, F. and P. S. SMOUSE (2001): Two-generation analysis of pollen flow across a landscape. II. Relation between ft, pollen dispersal and inter-female distance. Genetics 157: 851-857.10.1093/genetics/157.2.851146152611157001
    Search in Google ScholarBack to article
  2. AZEVEDO, V. C. R., M. KANASHIRO, A. Y. CIAMPI and D. GRATTAPAGLIA (2007): Genetic structure and mating system of Manilkara huberi (Ducke) A. Chev., a heavily logged Amazonian timber species. Journal Heredity 98: 646-654.10.1093/jhered/esm07417873149
    Search in Google ScholarBack to article
  3. BITTENCOURT, J. V. M. and A. M. SEBBENN (2008): Pollen movement within a continuous forest of wind-pollinated Araucaria angustifolia, inferred from paternity and TWOGENER analysis. Conservation Genetics 9: 855-868.10.1007/s10592-007-9411-2
    Search in Google ScholarBack to article
  4. BURGESS, I. P., E. R. WILLIAMS, J. C., BELL, C. E. HARWOOD and J. V. OWEN (1996): The effect of outcrossing rate on the growth of selected families of Eucalyptus grandis. Silvae Genetica 45: 97-100.
    Search in Google ScholarBack to article
  5. BUTCHER, P. A. and E. R. WILLIAMS (2002): Variation in outcrossing rates and growth in Eucalyptus camaldulensis from the Petford Region, Queensland; Evidence of outbreeding depression. Silvae Genetica 51: 6-12.
    Search in Google ScholarBack to article
  6. CAETANO, S., P. SILVEIRA, R. SPICHIGER and Y. NACIRIGRAVEN (2005): Identification of microsatellite markers in a neotropical seasonally dry forest tree, Astronium urundeuva (Anacardiaceae). Molecular Ecology Notes 5: 21-23.10.1111/j.1471-8286.2004.00814.x
    Search in Google ScholarBack to article
  7. CARVALHO, P. E. R. (2003): Espécies florestais brasileiras: recomendações silviculturais, potencialidades e uso da madeira. Colombo: EMBRAPA - CNPF. 640p.
    Search in Google ScholarBack to article
  8. COCKERHAM, C. C. (1969): Variance of gene frequencies. Evolution 23: 72-84.10.1111/j.1558-5646.1969.tb03496.x28562963
    Search in Google ScholarBack to article
  9. COLLEVATTI, R. G., D. GRATTAPAGLIA and J. D. HAY (2001): High resolution microsatellite based analysis of the mating system allows the detection of significant biparental inbreeding in Caryocar brasiliensis, and endangered tropical tree species. Heredity 86: 60-67.10.1046/j.1365-2540.2001.00801.x11298816
    Search in Google ScholarBack to article
  10. DEGEN, B., E. BANDOU and H. CARON (2004): Limited pollen dispersal and biparental inbreeding in Symphonia globulifera in French Guiana. Heredity 93: 585-591.10.1038/sj.hdy.680056015316558
    Search in Google ScholarBack to article
  11. EL-KASSABY, Y. A., B. G. DUNSWORTH and J. KRAKOWASKI (2003): Genetic evaluation of alternative silvicultural systems in coastal montane forests: western hemlock and amabilis fir. Theoretical and Applied Genetics 107: 598-610.10.1007/s00122-003-1291-312750773
    Search in Google ScholarBack to article
  12. FERES, J. M., A. M. SEBBENN, M. C. GUIDUGLI, M. A., MESTRINER, M. L. T. MORAES and A. L. ALZATE-MARIN (2012): Mating system parameters at hierarchical levels of fruits, individuals and populations in the Brazilian insect-pollinated tropical tree, Tabebuia roseo-alba (Bignoniaceae). Conservation Genetics 13: 393-405.10.1007/s10592-011-0292-z
    Search in Google ScholarBack to article
  13. FUCHS, E. J., J. A. LOBO and M. QUESADA (2003): Effects of forest fragmentation and flowering phonology on the reproductive success and mating patterns of the tropical dry forest tree Pachira quinata. Conservation Biology 17: 149-157.10.1046/j.1523-1739.2003.01140.x
    Search in Google ScholarBack to article
  14. GAINO, A. P. S., A. M. SILVA, M. A. MORAES, P. F. ALVES, M. L. T. MORAES, M. L. M. FREITAS and A. M. SEBBENN (2010): Understanding the effects of isolation on seed and pollen flow, spatial genetic structure and effective population size of the dioecious tropical tree species Myracrodruon urundeuva. Conservation Genetics 11: 1631-1643.10.1007/s10592-010-0046-3
    Search in Google ScholarBack to article
  15. HARDY, O. and X. VEKEMANS (2002): SPAGeDI: a versatile computer program to analyze spatial genetic structure at the individual or population levels. Molecular Ecology Notes 2: 618-620.10.1046/j.1471-8286.2002.00305.x
    Search in Google ScholarBack to article
  16. HARDY, O., S. C. GONZÁLEZ-MARTÍNEZ, B. COLAS, H. FRÉVILLE, A. MIGNOT and I. LIVERI (2004): Fine-scale genetic structure and gene dispersal in Centaurea corymbosa (Asteraceae). II. Correlated paternity within and among sibships. Genetics 168: 1601-1614.10.1534/genetics.104.027714144878715579710
    Search in Google ScholarBack to article
  17. JAMES, T., S. VEGE, P. ALDRICH and J. L. HAMRICK (1998): Mating systems of three tropical dry forest tree species. Biotropica 30: 587-594.10.1111/j.1744-7429.1998.tb00098.x
    Search in Google ScholarBack to article
  18. JONES, R. C., G. E. MCKINNON, B. M. POTTS and R. E. VAILLANCOURT (2005): Genetic diversity and mating system of an endangered tree Eucalyptus morrisbyi. Australian Journal of Botany 53: 367-377.10.1071/BT04182
    Search in Google ScholarBack to article
  19. KALINOWSKI, S. T., A. P. WAGNER and M. L. TAPER (2006): ML-Relate: a computer program for maximum likelihood estimation of relatedness and relationship. Molecular Ecology Notes 6: 576-579.10.1111/j.1471-8286.2006.01256.x
    Search in Google ScholarBack to article
  20. LACERDA, E. B. L., M. KANASHIRO and A. M. SEBBENN (2008): Long-pollen movement and deviation of random mating in a low-density continuous population of Hymenaea courbaril in the Brazilian Amazon. Forest Ecology and Management 40: 462-470.
    Search in Google ScholarBack to article
  21. LEMES, M. R., D. GRATTAPAGLIA, J. GROGAN, J. PROCTOR and R. GRIBEL (2007): Flexible mating system in a logged population of Swietenia macrophylla King (Meliaceae): implications for the management of a threatened Neotropical tree species. Plant Ecology 192: 169-179. 10.1007/s11258-007-9322-9
    Search in Google ScholarBack to article
  22. LINDGREN, D., D. G. LUIGI and P. A. JEFFERSON (1997): Status number for measuring genetic diversity. Forest Genetics 4: 69-76.
    Search in Google ScholarBack to article
  23. LOISELLE, B. A., V. L. SORK, J. NASON and C. GRAHAM (1995): Spatial genetic structure of a tropical understory shrub. Psychotria officinalis (Rubiaceae). American Journal of Botany 82: 1420-1425.10.1002/j.1537-2197.1995.tb12679.x
    Search in Google ScholarBack to article
  24. LORENZI, H. (2000): Árvores brasileiras: manual de identificação e cultivo de plantas nativas do Brasil. Nova Odessa: Intituto Plantarum.
    Search in Google ScholarBack to article
  25. LYNCH, M. and K. RITLAND (1999): Estimation of pairwise relatedness with molecular markers. Genetics 152: 1753-1766.10.1093/genetics/152.4.1753146071410430599
    Search in Google ScholarBack to article
  26. LYNCH, M. and B. WALSH (1998): Genetics and analysis of quantitative traits. 1st Sinauer Associates, Sundeland.
    Search in Google ScholarBack to article
  27. MILLAR, M. A., M. BYRNE, D. J. COATES, M. J. C. STUKELY and J. A. MCCOM (2000): Mating system studies in jarrah, Eucalyptus marginata (Myrtaceae). Australian Journal of Botany 48: 475-479.10.1071/BT98088
    Search in Google ScholarBack to article
  28. MILLIGAN, B. G. (2003): Maximum-likelihood estimation of relatedness. Genetics 163: 1153-1167. 10.1093/genetics/163.3.1153146249412663552
    Search in Google ScholarBack to article
  29. MORAES, M. L. T. and A. M. SEBBENN (2011): Pollen dispersal between isolated trees in the Brazilian savannah: a case study of the Neotropical tree Hymenaea stigonocarpa. Biotropica 40: 462-470.10.1111/j.1744-7429.2010.00679.x
    Search in Google ScholarBack to article
  30. MORAES, M. L. T., P. Y. KAGEYAMA and A. M. SEBBENN (2004): Correlated mating in dioecious tropical tree species, Myracrodruon urundeuva Fr. All. Forest Genetics 11: 53-59.
    Search in Google ScholarBack to article
  31. MORAES, M. A., W. V. VALÉRIO FILHO, M. D. V. RESENDE, A. M. SILVA, R. O. MANOEL, M. L. M. FREITAS, M. L. T. MORAES and A. M. SEBBENN (2012): Produtividade, estabilidade e adaptabilidade em progênies de Myracrodruon urundeuva F.F. & M.F. Allemão - Anacardiaceae. Scientia Forestalis 40: 69-76.
    Search in Google ScholarBack to article
  32. NAITO, Y., M. KANZAKI, H. IWATA, K. OBAYASHI, S. L. LEE, N. MUHAMMAD, T. OKUDA and Y. TSUMURA (2008): Density- dependent selfing and its effects on seed performance in a tropical canopy tree species, Shorea acuminata (Dipterocarpaceae). Forest Ecology and Management 256: 375-383.10.1016/j.foreco.2008.04.031
    Search in Google ScholarBack to article
  33. NAMKOONG, G. (1966): Inbreed effects on estimation of genetic additive variance. Forest Science 12: 8-13.
    Search in Google ScholarBack to article
  34. QUELLER, D. C. and K. F. GOODNIGHT (1989): Estimating relatedness using molecular markers. Evolution 43: 258-275.10.1111/j.1558-5646.1989.tb04226.x28568555
    Search in Google ScholarBack to article
  35. RIBEIRO, J. H. (1989): Aroeira: durável além de uma vida. Globo Rural 5: 85-90.
    Search in Google ScholarBack to article
  36. RITLAND, K. (1989): Correlated matings in the partial selfer Mimulus guttatus. Evolution 43: 848-859.10.1111/j.1558-5646.1989.tb05182.x28564194
    Search in Google ScholarBack to article
  37. RITLAND, K. (1996): Estimators for pairwise relatedness and individual inbreeding coefficients. Genetics Resources 67: 175-185.10.1017/S0016672300033620
    Search in Google ScholarBack to article
  38. RITLAND, K. (2000): Mark - Genetic Marker Analysis Program. University of British Columbia Versão 3.1, 2006. Site: <http://genetics.forestry.ubc.ca/ritland/programs.html>.
    Search in Google ScholarBack to article
  39. RITLAND, K. (2002): Extensions of models for the estimation of mating systems using n independent loci. Heredity 88: 221-228.10.1038/sj.hdy.680002911920127
    Search in Google ScholarBack to article
  40. SAMPSON, J. F. (1998): Multiple paternity in Eucalyptus rameliana (Myrtaceae). Heredity 81: 349-355. 10.1046/j.1365-2540.1998.00404.x
    Search in Google ScholarBack to article
  41. SEBBENN, A. M. (2006): Sistema de reprodução em espécies arbóreas tropicais e suas implicações para a seleção de árvores matrizes para reflorestamentos ambientais. In: HIGA, A. R. and L. D. SILVA. Pomares de sementes de espécies florestais nativas. Curitiba: FUPEF, p. 93-138.
    Search in Google ScholarBack to article
  42. SILVA, M. B., M. KANASHIRO, A. Y. CIAMPI, I. THOMPSON and A. M. SEBBENN (2008): Genetic effects of selective logging and pollen gene flow in a low-density population of the dioecious tropical tree Bagassa guianensis in the Brazilian Amazon. Forest Ecology and Management 255: 1548-1558.10.1016/j.foreco.2007.11.012
    Search in Google ScholarBack to article
  43. SMOUSE, P. E., R. J. DYER, R. D. WESTFALL and V. L. SORK (2001): Two-generation analysis of pollen flow across a landscape. I. Male gamete heterogeneity among females. Evolution 55: 260-271.10.1111/j.0014-3820.2001.tb01291.x11308084
    Search in Google ScholarBack to article
  44. SOUSA, V. A., A. M. SEBBENN, H. HATTEMER and M. ZIEHE (2005): Correlated mating in populations of a dioecious Brazilian conifer, Araucaria angustifolia (Bert.) O. Ktze. Forest Genetics 12: 107-119.
    Search in Google ScholarBack to article
  45. SQUILLACE, A. E. (1974): Average genetic correlations among offspring from open-pollinated forest trees. Silvae Genetica 23: 149-156.
    Search in Google ScholarBack to article
  46. TAMAKI, I., S. SETSUKO and N. TOMARU (2009): Estimation of outcrossing rates at hierachical levels of fruits, individuals, populations and species in Magnolia stellata. Heredity 102: 381-388.10.1038/hdy.2008.12819142200
    Search in Google ScholarBack to article
  47. WANG, J. (2002): An estimator for pairwise relatedness using molecular markers. Genetics 160: 1203-1215.10.1093/genetics/160.3.1203146200311901134
    Search in Google ScholarBack to article
  48. WANG, J. (2007): Triadic IBD coefficients and applications to estimating pairwise relatedness. Genetics Resources 89: 135-153.10.1017/S001667230700879817894908
    Search in Google ScholarBack to article
  49. WANG, J. (2011a): COANCESTRY: a program for simulating, estimating and analysing relatedness and inbreeding coefficients. Molecular Ecology Resources 11: 141-145.10.1111/j.1755-0998.2010.02885.x21429111
    Search in Google ScholarBack to article
  50. WANG, J. (2011b): Unbiased relatedness estimation in structured populations. Genetics 187: 887-901.10.1534/genetics.110.124438306368021212234
    Search in Google ScholarBack to article
DOI: https://doi.org/10.1515/sg-2012-0032 | Journal eISSN: 2509-8934 | Journal ISSN: 0037-5349
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Language: English
Page range: 256 - 264
Submitted on: Mar 20, 2012
Published on: Aug 1, 2017
Published by: Johann Heinrich von Thünen Institute
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year
Keywords:
additive genetic variation,
effective population size,
kinship,
mating system
Related subjects:
Life sciences,
Molecular biology,
Genetics,
Biotechnology,
Plant science

© 2017 M. A. Moraes, A. P. S. Gaino, M. L. T. Moraes, M. L. M. Freitas, A. M. Sebbenn, published by Johann Heinrich von Thünen Institute
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 License.

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