References
- BRONDANI, R. P. V., E. R. WILLIAMS, C. BRONDANI and D. GRATTAPAGLIA (2006): A microsatellite-based consensus linkage map for species of Eucalyptus and a novel set of 230 microsatellite markers for the genus. BMC Plant Biol 6: 20.10.1186/1471-2229-6-20159973316995939
- CHA, R. S. and W. G. THILLY (1995): Specificity, efficiency, and fidelity of PCR, pp. 37-52. In: PCR primer: a laboratory manual, edited by C. W. DIEFFENBACH and G. S. DVEKSLER, Cold Spring Harbor Press, New York.
- CHAGNÉ, D., K. GASIC, R. N. CROWHURST, Y. HAN, H. C. BASSETT, D. R. BOWATTE, T. J. LAWRENCE, E. H. A. RIKKERINK, S. E. GARDINER and S. S. KORBAN (2008): Development of a set of SNP markers present in expressed genes of the apple. Genomics 92: 353-358.10.1016/j.ygeno.2008.07.00818721872
- CHO, R. J., M. MINDRINOS, D. R. RICHARDS, R. J. SAPOLSKY, M. ANDERSON, E. DRENKARD, J. DEWDNEY, N. FEDERSPIEL, A. THEOLOGIS, W. H. YANG, E. HUBBELL, M. AU, E. Y. CHUNG, D. LASHKARI, B. Lemieux, C. DEAN, R. J. LIPSHUTZ, F. M. AUSUBEL, R. W. DAVIS and P. J. OEFNER (1999): Genome-wide mapping with biallelic markers in Arabidopsis thaliana. Nat Genet 23: 203-207.10.1038/1383310508518
- ELLIS, J. R. and J. M. BURKE (2007): EST-SSRs as a resource for population genetic analyses. Heredity 99: 125-132.10.1038/sj.hdy.680100117519965
- FAO (2000): Global forest resources assessment 2000 - main report. FAO forestry paper No. 140. FAO, Rome.
- GAN, S., J. SHI, M. LI, K. WU, J. WU and J. BAI (2003): Moderate-density molecular maps of Eucalyptus urophylla S. T. Blake and E. tereticornis Smith genomes based on RAPD markers. Genetica 118: 59-67.10.1023/A:1022966018079
- GRATTAPAGLIA, D. and H. D. BRADSHAW JR (1994): Nuclear DNA content of commercially important Eucalyptus species and hybrids. Can J For Res 24: 1074-1078.10.1139/x94-142
- GUJARIA, N., A. KUMAR, P. DAUTHAL, A. DUBEY, P. HIREMATH, A. B. PRAKASH, A. FARMER, M. BHIDE, T. SHAH, P. M. GAUR, H. D. UPADHYAYA, S. BHATIA, D. R. COOK, G. D. MAY, J. K. VARSHNEY (2011): Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.). Theor Appl Genet 122: 1577-1589.10.1007/s00122-011-1556-1308204021384113
- HARRY, D. E., B. TEMESGEN and D. B. NEALE (1998): Codominant PCR-based markers for Pinus taeda developed from mapped cDNA clones. Theor Appl Genet 97: 327-336.10.1007/s001220050903
- HEESACKER, A., V. K. KISHORE, W. GAO, S. TANG, J. M. KOLKMAN, A. GINGLE, M. MATVIENKO, A. KOZIK, R. M. MICHELMORE, Z. LAI, L. H. RIESEBERG and S. J. KNAPP (2008): SSRs and INDELs mined from the sunflower EST database: abundance, polymorphisms, and crosstaxa utility. Theor Appl Genet 117: 1021-1029.10.1007/s00122-008-0841-018633591
- HUDSON, C. J., A. R. K. KULLAN, J. S. FREEMAN, D. A. FARIA, D. GRATTAPAGLIA, A. KILIAN, A. A. MYBURG, B. M. POTTS and R. E. VAILLANCOURT (2012): High synteny and colinearity among Eucalyptus genomes revealed by high-density comparative genetic mapping. Tree Genet Genomes 8: 339-352.10.1007/s11295-011-0444-9
- IWATA, H., T. UJINO-IHARA, K. YOSHIMURA, K. NAGASAKA, Y. MUKAI and Y. TSUMURA (2001): Cleaved amplified polymorphic sequence markers in sugi, Cryptomeria japonica D. Don, and their locations on a linkage map. Theor Appl Genet 103: 881-895.10.1007/s001220100732
- JONES, N., H. OUGHAM, H. THOMAS and I. PAS˘AKINSKIENË (2009): Markers and mapping revisited: finding your gene. New Phytol 183: 935-966.10.1111/j.1469-8137.2009.02933.x19594696
- KELLER, G., T. MARCHAL, H. SANCLEMENTE, M. NAVARRO, N. LADOUCE, P. WINCKER, A. COULOUX, C. TEULIÈRES and C. MARQUE (2009): Development and functional annotation of an 11,303-EST collection from Eucalyptus for studies of cold tolerance. Tree Genet Genomes 5: 317-327.10.1007/s11295-008-0184-7
- KIM, S. and A. MISRA (2007): SNP Genotyping: technologies and biomedical applications. Annu Rev Biomed Eng 9: 7.1-7.32.10.1146/annurev.bioeng.9.060906.15203717391067
- KONIECZNY, A. and F. M. AUSUBEL (1993): A procedure for mapping Arabidopsis mutations using co-dominant ecotype- specific PCR-based markers. Plant J 4: 403-410.10.1046/j.1365-313X.1993.04020403.x
- KULLAN, A. R. K., M. M. DYK VAN, N. JONES, A. KANZLER, A. BAYLEY and A. A. MYBURG (2012): High-density genetic linkage maps with over 2,400 sequence-anchored DArT markers for genetic dissection in an F2 pseudobackcross of Eucalyptus grandis × E. urophylla. Tree Genet Genomes 8: 163-175.10.1007/s11295-011-0430-2
- KUNKEL, T. A. and K. BEBENIK (2000): DNA replication fidelity. Annu Rev Biochem 69: 497-529.10.1146/annurev.biochem.69.1.49710966467
- LI, F. and S. GAN (2011): An optimised protocol for fluorescent- dUTP based SSR genotyping and its application to genetic mapping in Eucalyptus. Silvae Genet 60: 18-25.10.1515/sg-2011-0003
- LINCOLN, S., M. DALY and E. LANDER (1992): Constructing genetic maps with MAPMAKER/EXP 3.0. Whitehead Institute technical report, 3rd edition. Whitehead Institute, Cambridge, Massachusetts.
- MIURA, Y., M. HIRATA and M. FUJIMORI (2007): Mapping of EST-derived CAPS markers in Italian ryegrass (Lolium multiflorum Lam.). Plant Breed 126: 353-360.10.1111/j.1439-0523.2007.01386.x
- NELSON, M. N., P. M. MOOLHUIJZEN, J. G. BOERSMA, M. CHUDY, K. LESNIEWSKA, M. BELLGARD, R. P. OLIVER, W. S´WIE˛CICKI, B. WOLKO, W. A. COWLING and S. R. ELLWOOD (2010): Aligning a new reference genetic map of Lupinus angustifolius with the genome sequence of the model legume, Lotus japonicus. DNA Res 17: 73-83.10.1093/dnares/dsq001285338120133394
- NELSON, M. N., H. T. T. PHAN, S. R. ELLWOOD, P. M. MOOLHUIJZEN, J. HANE, A. WILLIAMS, C. E. O’LONE, J. FOSU-NYARKO, M. SCOBIE, M. CAKIR, M. G. K. JONES, M. BELLGARD, M. KSIA˛Z · KIEWICZ, B. WOLKO, S. J. BARKER, R. P. OLIVER AND W. A. COWLING (2006): The first genebased map of Lupinus angustifolius L. - location of domestication genes and conserved synteny with Medicago truncatula. Theor Appl Genet 113: 225-238.10.1007/s00122-006-0288-0
- NEVES, L. G., E. M. C. MAMANI, A. C. ALFENAS, M. KIRST and D. GRATTAPAGLIA (2011): A high-density transcript linkage map with 1,845 expressed genes positioned by microarray-based Single Feature Polymorphisms (SFP) in Eucalyptus. BMC Genomics 12: 189.10.1186/1471-2164-12-189
- PETROLI, C. D., C. P. SANSALONI, J. CARLING, D. A. STEANE, R. E. VAILLANCOURT, A. A. MYBURG, O. B. SILVA, G. J. PAPPAS, A. KILIAN and D. GRATTAPAGLIA (2012): Genomic characterization of DArT markers based on high-density linkage analysis and physical mapping to the Eucalyptus genome. PLoS One 7: e44684.10.1371/journal.pone.0044684
- RAFALSKI, A. (2002): Applications of single nucleotide polymorphisms in crop genetics. Curr Opin Plant Biol 5: 94-100.10.1016/S1369-5266(02)00240-6
- ROZEN, S. and H. J. SKALETSKY (2000): Primer3 on the WWW for general users and for biologist programmers, pp. 365-386. In: Bioinformatics methods and protocols: methods in molecular biology, edited by S. KRAWETZ and S. MISENER, Humana Press, Totowa, New Jersey.10.1385/1-59259-192-2:365
- SHERRY, S. T., M.-H. WARD, M. KHOLODOV, J. BAKER, L. PHAN, E. M. SMIGIELSKI and K. SIROTKIN (2001): dbSNP: the NCBI database of genetic variation. Nucleic Acids Res 29: 308-311.10.1093/nar/29.1.3082978311125122
- SLATE, J., J. GRATTEN, D. BERALDI, J. STAPLEY, M. HALE and J. M. PEMBERTON (2009): Gene mapping in the wild with SNPs: guidelines and future directions. Genetica 136: 97-107.10.1007/s10709-008-9317-z18780148
- STANIASZEK, M., E. U. KOZIK and W. MARCZEWSKI (2007): A CAPS marker TAO1902 diagnostic for the I-2 gene conferring resistance to Fusarium oxysporum f. sp. lycopersici race 2 in tomato. Plant Breed 126: 331-333.10.1111/j.1439-0523.2007.01355.x
- VARSHNEY, R. K., A. GRANER and M. E. SORRELLS (2005): Genic microsatellite markers in plants: features and applications. Trends Biotechnol 23: 48-55.10.1016/j.tibtech.2004.11.00515629858
- VARSHNEY, R. K., S. NAYAK, B. JAYASHREE, K. ESHWAR, H. D. UPADHYAYA and D. A. HOISINGTON (2007): Development of cost-effective SNP assays for chickpea genome analysis and breeding. SAT eJournal 3: 1-3.
- ZHANG, X., F. LI, Y. WANG, L. XU, M. LI and S. GAN (2009): An optimized protocol for sequencing EST-PCR products in Eucalyptus. Genomics Appl Biol 28: 535-543.