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Short Note: Seven Genomic SSRs Revealed in Eucalyptus by Re-sequencing of DNA Sequences from GenBank Cover

Short Note: Seven Genomic SSRs Revealed in Eucalyptus by Re-sequencing of DNA Sequences from GenBank

By: X. He,  F. Li,  J. Shi and  S. Gan  
Open Access
|Aug 2017

References

  1. Brondani, R. P. V., E. R. Williams, C. Brondani and D. Grattapaglia (2006): A microsatellite-based consensus linkage map for species of Eucalyptus and a novel set of 230 microsatellite markers for the genus. BMC Plant Biol. 6: 20.10.1186/1471-2229-6-20
  2. Faria, D. A., E. M. C. Mamani, G. J. Pappas, D. Grattapaglia (2011): Genotyping systems for Eucalyptus based on tetra-, penta-, and hexanucleotide repeat EST microsatellites and their use for individual fingerprinting and assignment tests. Tree Genet. Genomes 7: 63–77.10.1007/s11295-010-0315-9
  3. Faria, D. A., E. M. C. Mamani, M. R. Pappas, G. J. Pappas Jr. and D. Grattapaglia (2010): A selected set of EST-derived microsatellites, polymorphic and transferable across 6 species of Eucalyptus. J. Hered. 101: 512–520.10.1093/jhered/esq024
  4. Gan, S., J. Shi, M. Li, K. Wu, J. Wu and J. Bai (2003): Moderate-density molecular maps of Eucalyptus urophylla S. T. Blake and E. tereticornis Smith genomes based on RAPD markers. Genetica 118: 59–67.10.1023/A:1022966018079
  5. Gupta, P. K. and R. K. Varshney (2000): The development and use of microsatellite markers for genetic analysis and plant breeding with special emphasis on bread wheat. Euphytica 113: 163–185.10.1023/A:1003910819967
  6. Powell, W., G. C. Machray and J. Provan (1996): Polymorphisms revealed by simple sequence repeats. Trend. Plant Sci. 1: 215–222.10.1016/S1360-1385(96)86898-0
  7. Rozen, S. and H. J. Skaletsky (2000): Primer3 on the WWW for general users and for biologist programmers. In: Bioinformatics methods and protocols: methods in molecular biology, eds Krawetz, S. and S. Misener. Humana Press, Totowa, NJ. 365–386.
  8. Yonemaru, J.-I., A. Tsuyu, M. Tatsumi, K. Shigemitsu, M. Takashi and Y. Masahiro (2009): Development of genome-wide simple sequence repeat markers using whole-genome shotgun sequences of sorghum (Sorghum bicolor (L.) Moench). DNA Res. 16: 187–193.10.1093/dnares/dsp005269577219363056
  9. Zhang, X., F. Li, Y. Wang, L. Xu, M. Li and S. Gan (2009): An optimized protocol for sequencing EST-PCR products in Eucalyptus. Genomics Appl. Biol. 28: 535–543.
  10. Zhou, C., F. Li, Q. Weng, X. Yu, M. Li and S. Gan (2010): Comparison between direct sequencing and poolcloning-based sequencing of PCR products in EST-SSR marker development in Eucalyptus. Mol. Plant Breed. 8: 1 (doi:10.5376/mpb.cn.2010.08.0001).
DOI: https://doi.org/10.1515/sg-2011-0013 | Journal eISSN: 2509-8934 | Journal ISSN: 0037-5349
Language: English
Page range: 92 - 94
Submitted on: Jan 28, 2010
Published on: Aug 5, 2017
Published by: Johann Heinrich von Thünen Institute
In partnership with: Paradigm Publishing Services
Publication frequency: 1 issue per year

© 2017 X. He, F. Li, J. Shi, S. Gan, published by Johann Heinrich von Thünen Institute
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.