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HLA Genotyping using Next Generation Sequencing Cover

References

  1. 1. RAVINDRANATH Y. Evolution of modern treatment of childhood acute leukemia and cancer: adventures and battles in the 1970s and 1980s. Pediatr Clin North Am. 2015; 62(1):1-10.10.1016/j.pcl.2014.09.00525435108
  2. 2. BLEEKER FE., HOPMAN SM., MERKS JH., AALFS CM., HENNEKAM RC. Brain tumors and syndromes in children. Neuropediatrics. 2014; 45(3):137-61.10.1055/s-0034-136811624535705
  3. 3. MILLARD NE., DUNKEL IJ. Advances in the management of central nervous system germ cell tumors. Curr Oncol Rep. 2014; 16(7):393.10.1007/s11912-014-0393-124838613
  4. 4. THORP NJ., TAYLOR RE. Management of central nervous system tumours in children. Clin Oncol (R Coll Radiol). 2014; 26(7):438-45.10.1016/j.clon.2014.04.02924856624
  5. 5. CHEUK DK., LEE TL., CHIANG AK., HA SY., CHAN GC. Autologous hematopoietic stem cell transplantation for high-risk brain tumors in children. J Neurooncol. 2008; 86(3):337-47.10.1007/s11060-007-9478-0710010417906911
  6. 6. SANDU N., SCHALLER B. Stem cell transplantation in brain tumors: a new field for molecular imaging? Mol Med. 2010; 16(9-10):433-7.10.2119/molmed.2010.00035293595020593112
  7. 7. COHEN AL., COLMAN H. Glioma biology and molecular markers. Cancer Treat Res. 2015; 163:15-30.10.1007/978-3-319-12048-5_225468223
  8. 8. WURDINGER T., DEUMELANDT K., VAN DER VLIET HJ., WESSELING P., DE GRUIJL TD. Mechanisms of intimate and long-distance cross-talk between glioma and myeloid cells: how to break a vicious cycle. Biochim Biophys Acta. 2014; 1846(2):560-75.10.1016/j.bbcan.2014.10.00325453365
  9. 9. NAKANO I. Stem cell signature in glioblastoma: therapeutic development for a moving target. J Neurosurg. 2015; 122(2):324-30.10.3171/2014.9.JNS13225325397368
  10. 10. CHINTAGUMPALA M., GAJJAR A. Brain tumors. PediatrClin North Am. 2015;62(1):167-78.10.1016/j.pcl.2014.09.01125435118
  11. 11. THOMAS C., BHATIA S. Cancer: brain-regulated biphasic stress response induces cell growth or cell death to adapt to psychological stressors. Adv Mind Body Med. 2014; 28(3):14-21.
  12. 12. AMBADY P., BETTEGOWDA C., HOLDHOFF M. Emerging methods for disease monitoring in malignant gliomas. CNS Oncol. 2013; 2(6):511-22.10.2217/cns.13.44498651625054821
  13. 13. CARMIGNANI M., VOLPE AR., ALDEA M., SORITAU O., IRIMIE A., FLORIAN IS., et al. Glioblastoma stem cells: a new target for metformin and arsenic trioxide. J Biol Regul Homeost Agents. 2014; 28(1):1-15.
  14. 14. ALDEA M., CRACIUN L., TOMULEASA C., BERINDAN-NEAGOE I., KACSO G., FLORIAN IS., et al. Repositioning metformin in cancer: genetics, drug targets, and new ways of delivery. Tumour Biol. 2014; 35(6):5101-10.10.1007/s13277-014-1676-824504677
  15. 15. ALDEA M., TOMULEASA C., PETRUSHEV B., SUSMAN S., KACSO GI., IRIMIE A., et al. Antidiabetic pharmacology: a link between metabolic syndrome and neuro-oncology? J BUON. 2011; 16(3):409-13.
  16. 16. FLORIAN IS., TOMULEASA C., SORITAU O., TIMIS T., IOANI H., IRIMIE A., et al. Cancer stem cells and malignant gliomas. From pathophysiology to targeted molecular therapy. J BUON. 2011; 16(1):16-23.
  17. 17. AIKEN R. Molecular neuro-oncology and the challenge of the blood-brain barrier. Semin Oncol. 2014; 41(4):438-45.10.1053/j.seminoncol.2014.06.00525173137
  18. 18. SINGHAL T., ALAVI A., KIM CK. Brain: positron emission tomography tracers beyond 18F fluorodeoxyglucose. PET Clin. 2014; 9(3):267-76.10.1016/j.cpet.2014.03.00925030390
  19. 19. JUHÁSZ C., DWIVEDI S., KAMSON DO., MICHELHAUGH SK., MITTAL S. Comparison of amino acid positron emission tomographic radiotracers for molecular imaging of primary and metastatic brain tumors. Mol Imaging. 2014; 13.10.2310/7290.2014.00015419908724825818
  20. 20. WHITFIELD GA., KENNEDY SR., DJOUKHADAR IK., JACKSON A. Imaging and target volume delineation in glioma. Clin Oncol (R Coll Radiol). 2014; 26(7):364-76.10.1016/j.clon.2014.04.02624824451
  21. 21. HARTMANN O., VALTEAU-COUANET D., VASSAL G., LAPIERRE V., BRUGIERES L., DELGADO R, et al. Prognostic factors in metastatic neuroblastoma in patients over 1 year of age treated with high-dose chemotherapy and stem cell transplantation: a multivariate analysis in 218 patients treated in a single institution. Bone Marrow Transplant. 1999; 23(8):789-95.10.1038/sj.bmt.170173710231141
  22. 22. DUPUIS-GIROD S., HARTMANN O., BENHAMOU E., DOZ F., MECHINAUD F., BOUFFET E., et al. Will high dose chemotherapy followed by autologous bone marrow transplantation supplant cranio-spinal irradiation in young children treated for medulloblastoma? J Neurooncol. 1996; 27(1):87-98.10.1007/BF001460888699230
  23. 23. VALTEAU-COUANET D., FILLIPINI B., BENHAMOU E., GRILL J., KALIFA C., COUANET D., et al. High-dose busulfan and thiotepa followed by autologous stem cell transplantation (ASCT) in previously irradiated medulloblastoma patients: high toxicity and lack of efficacy. Bone Marrow Transplant. 2005; 36(11):939-45.10.1038/sj.bmt.170516216184181
  24. 24. SECONDINO S., PEDRAZZOLI P., SCHIAVETTO I., Basilico V., BRAMERIO E., MASSIMINO M, et al. Antitumor effect of allogeneic hematopoietic SCT in metastatic medulloblastoma. Bone Marrow Transplant. 2008; 42(2):131-3.10.1038/bmt.2008.8618372908
  25. 25. NISHIKAWA T., OKAMOTO Y., TANABE T., SHINKODA Y., KODAMA Y., HIGASHI M., et al. Unexpectedly high AUC levels in a child who received intravenous busulfan before stem cell transplantation. Bone Marrow Transplant. 2010; 45(3):602-4.10.1038/bmt.2009.19519684630
  26. 26. LAFAY-COUSIN L., HADER W., WEI XC., NORDAL R., STROTHER D., HAWKINS C., et al. Post-chemotherapy maturation in supratentorial primitive neuroectodermal tumors. Brain Pathol. 2014; 24(2):166-72.10.1111/bpa.12089802891124033491
  27. 27. CLEMENT J., VARLOTTO J., RYBKA W., FRAUENHOFFER E., DRABICK JJ. Unusual case of recurrent extraneural metastatic medulloblastoma in a young adult: durable complete remission with Ewing sarcoma chemotherapy regimen and consolidation with autologous bone marrow transplantation and local radiation. J Clin Oncol. 2013; 31(19):e316-9.10.1200/JCO.2012.42.670023715566
  28. 28. VELJKOVIC D., VUJIC D., NONKOVIC OS., JEVTIC D., ZECEVIC Z, LAZIC E. Mobilization and harvesting of peripheral blood stem cells in pediatric patients with solid tumors. Ther Apher Dial. 2011; 15(6):579-86.10.1111/j.1744-9987.2011.00990.x22107695
  29. 29. NEGRETTI L., BLANCHARD P., COUANET D., KIEFFER V., GOMA G., HABRAND JL., et al. Pseudoprogression after high-dose busulfan-thiotepa with autologous stem cell transplantation and radiation therapy in children with brain tumors: Impact on survival. Neuro Oncol. 2012; 14(11):1413-21.10.1093/neuonc/nos212348026423042716
  30. 30. SANGER F., NICKLEN S., COULSON AR. DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA. 1977; 74(12):5463-7.10.1073/pnas.74.12.5463431765271968
  31. 31. QUAIL MA., SMITH M., COUPLAND P., OTTO TD., HARRIS SR., CONNOR TR., et al. A tale of three next generation sequencing platforms: comparison of Ion Torrent, Pacific Biosciences and Illumina MiSeq sequencers. BMC Genomics. 2012; 13:341.10.1186/1471-2164-13-341343122722827831
  32. 32. METZKER ML. Sequencing technologies – the next generation. Nat Rev Genet. 2010; 11(1):31-46.10.1038/nrg262619997069
  33. 33. GRADA A., WEINBRECHT K. Next-generation sequencing: methodology and application. J Invest Dermatol. 2013; 133 (8):e11.10.1038/jid.2013.24823856935
  34. 34. MELDRUM C, DOYLE MA, TOTHILL RW. Next-generation sequencing for cancer diagnostics: a practical perspective. Clin Biochem Rev. 2011; 32(4):177-95.
  35. 35. ROBINSON J., HALLIWELL JA., MCWILLIAM H., LOPEZ R., PARHAM P., MARSH SG. The IMGT/HLA database. Nucleic Acids Res. 2013; 41(Database issue):D1222-7.10.1093/nar/gks949353122123080122
  36. 36. JUNG HL. Shedding a new light on the HLA matching. Korean J Hematol. 2011; 46(1):1-2.10.5045/kjh.2011.46.1.1306561821461293
  37. 37. GABRIEL C., DANZEL M., HACKL C., KOPAL G., HUFNAGL P., HOFER K., et al. Rapid high-throughput human leucocyte antigen typing by massive parallel pyrosequencing for high-resolution allele identification. Hum. Immunol. 2009, 70, 960-64.
  38. 38. BENTLEY G., HIGUCHI R., HOGLUND B., GOODRIDGE D., SAYER D., TRACHTENBERG EA, et al. High-resolution, high-throughput HLA genotyping by next generation sequencing. Tissue Antigens 2009, 74, 393-403.10.1111/j.1399-0039.2009.01345.x420512519845894
  39. 39. HOLCOMB CL., HÖGLUND B., ANDERSON MW., BLAKE LA., BÖHME I., EGHOLM M., et al. A multi-site study using high-resolution HLA genotyping by next generation sequencing. Tissue Antigens. 2011; 77(3):206-17.10.1111/j.1399-0039.2010.01606.x420512421299525
  40. 40. WANG C., KRISHNAKUMAR S., WILHELMY J., BABRZADEH F., STEPANYAN L., SU LF., et al. High-throughput, high-fidelity HLA genotyping with deep sequencing. Proc Natl Acad Sci USA. 2012; 109(22):8676-81.10.1073/pnas.1206614109336521822589303
  41. 41. DANZER M., NIKLAS N., STABENTHEINER S., HOFER K., PRÖLL J., STÜCKLER C., et al. Rapid, scalable and highly automated HLA genotyping using next-generation sequencing: a transition from research to diagnostics. BMC Genomics. 2013; 14:221.10.1186/1471-2164-14-221363986523557197
  42. 42. MOONSAMY PV., WILLIAMS T., BONELLA P., HOLCOMB CL., HOGLUND BN., HILLMAN G., et al. High Throughput HLA genotyping using 454 sequencing and the FluidigmAccess ArrayTM system for simplified amplicon library preparation. Tissue Antigens 2013, 81, 141-49.10.1111/tan.1207123398507
  43. 43. CHANG CJ., CHEN PL., YANG WS., CHAO KM. A fault-tolerant method for HLA typing with PacBio data. BMC Bioinformatics. 2014; 15:296.10.1186/1471-2105-15-296416184725183223
  44. 44. EHRENBERG PK., GERETZ A., BALDWIN KM., APPS R., POLONIS VR., ROBB ML., et al. High-throughput multiplex HLA genotyping by next-generation sequencing using multi-locus individual tagging. BMC Genomics. 2014; 15:864.10.1186/1471-2164-15-864419600325283548
  45. 45. SMITH AG., PYO CW., NELSON W., GOW E., WANG R., SHEN S., et al. Next generation sequencing to determine HLA class II genotypes in a cohort of hematopoietic cell transplant patients and donors. Hum Immunol. 2014; 75(10):1040-6.10.1016/j.humimm.2014.08.20625167774
  46. 46. ZHOU M., GAO D., CHAI X., LIU J., LAN Z., LIU Q., et al. Application of high-throughput, high-resolution and cost-effective next generation sequencing-based large-scale HLA typing in donor registry. Tissue Antigens. 2015; 85(1):20-8.10.1111/tan.1247725417816
DOI: https://doi.org/10.1515/rjim-2016-0019 | Journal eISSN: 2501-062X | Journal ISSN: 1220-4749
Language: English
Page range: 98 - 104
Submitted on: Oct 28, 2015
Published on: May 20, 2016
Published by: N.G. Lupu Internal Medicine Foundation
In partnership with: Paradigm Publishing Services
Publication frequency: 4 issues per year

© 2016 C. Lucan, Laura-Ancuta Pop, A. Florian, Valentina Pileczki, B. Petrushev, Delia Dima, Ioana Frinc, Ioana Berindan-Neagoe, A. Irimie, C. Berce, I.-S. Florian, Anca Bojan, C. Tomuleasa, published by N.G. Lupu Internal Medicine Foundation
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.