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Real-Time Polymerase Chain Reaction For Detection Of Optimal Thermal Profile For DNA Templates From Air-Dried Insect Collection Material Cover

Real-Time Polymerase Chain Reaction For Detection Of Optimal Thermal Profile For DNA Templates From Air-Dried Insect Collection Material

Proceedings of the Latvian Academy of Sciences. Section B. Natural, Exact, and Applied Sciences.
Volume 69 (2015): Issue 1-2 (April 2015)
By: ,  ,  ,   and    
Open Access
|Jul 2015
References

References

  1. Alroy, J. (2003). Taxonomic inflation and body mass distributions in North American fossil mammals., 431–443.
    Open DOISearch in Google Scholar
  2. Alvarez, M. J., Vila-Ortiz, G. J., Salibe, M. C., Podhajcer, O. L., Pitossi, F. J. (2007). Model based analysis of real-time PCR data from DNA binding dye protocols., 85–95.
    Open DOISearch in Google Scholar
  3. Barševskis, A. (2003).[Ground beetles (Coleoptera: Carabidae, Trachypachidae & Rhysodidae) of Latvia]. Daugavpils: Baltic Institute of Coleopterology. 264 lpp. (in Latvian).
    Search in Google Scholar
  4. Barševskis, A. (2007). Biogeography of the genusDumeril, 1806 (Coleoptera: Carabidae).,(1), 121–135.
    Search in Google Scholar
  5. Burns, M. J., Nixon, G. J., Foy, C. A., Harris, N. (2005). Standardisation of data from real-time quantitative PCR methods — evaluation of outliers and comparison..,, 31–44.
    Open DOISearch in Google Scholar
  6. Bustin, S. A., Benes, V., Nolan, T., Pfaffl, M. W. (2005)., 597–601.
    Open DOISearch in Google Scholar
  7. Calderon-Cortes, N., Quesada, M., Cano-Camacho, H., Zavala-Paramo, G. (2010). A simple and rapid method for DNA isolation frominsects.,, 5056–5064.
    Open DOISearch in Google Scholar
  8. Dahlgren, T. G., Lundberg, J., Pleijel, F., Sundberg, P. (2000). Morphological and molecular evidence of the phylogeny of(Annelida).,(4), 249–253.
    Open DOISearch in Google Scholar
  9. Demeke, T., Ratnayaka, I., Phan, A. (2009). Effects of DNA extraction and purification methods on real-time quantitative PCR analysis of roundup ready soybean..,(4), 1136–1144.
    Open DOISearch in Google Scholar
  10. Demeke, T., Ratnayaka, I., Holigroski, M., Phan, A. (2012). Assessment of DNA extraction methods for PCR testing of discontinued or unapproved biotech events in single seeds of canola, flax and soybean.,(1–2), 44–49.
    Open DOISearch in Google Scholar
  11. Folmer, O., Black, M., Hoeh, W., Lutz, R., Vrijenhoek R. (1994). DNA primers for amplification of mitochondrial cytochromeoxidase subunit I from diverse metazoan invertebrates.(5), 294–299.
    Search in Google Scholar
  12. Galtier, N., Nabholz, B., Glémin, S., Hurst, G. D. (2009). Mitochondrial DNA as a marker of molecular diversity: A reappraisal.(22), 4541–4550.
    Open DOISearch in Google Scholar
  13. Gavarāne, I., Kokina, I., Aksjuta, K., Barševskis, A., Valainis, U. (2011). Optimization of DNA extraction protocol for DNA isolation from air-dried collection material for further phylogenetic analysis (Coleoptera: Carabidae).,(2), 141–147.
    Search in Google Scholar
  14. Gilbert, M. T. P., Moore, W., Melchior, L., Worobey, M. (2007). DNA extraction from dry museum beetles without conferring external morphological damage.(),(3), e272.
    Open DOISearch in Google Scholar
  15. Goldstein, P. Z., DeSalle R. (2003). Calibrating phylogenetic species formation in a threatened insect using DNA from historical specimens., 1993–1998.
    Open DOISearch in Google Scholar
  16. Harper, G. L., Maclean, N., Goulson, D. (2006). Analysis of museum specimens suggests extreme genetic drift in the Adonis blue butterfly ().,, 447–452.
    Open DOISearch in Google Scholar
  17. Hendrich, L., Pons, J., Ribera, I., Balke, M. (2010). Mitochondrialsequence data reliably uncover patterns of insect diversity but suffer from high lineage-idiosyncratic error rates.(12), e14448.
    Open DOISearch in Google Scholar
  18. Howland, D. E., Hewitt, G. M. (1995). Phylogeny of the Coleoptera based on mitochondrial cytochrome oxidase I sequence data.,(3), 203–215.
    Open DOISearch in Google Scholar
  19. Isaac, N. J. B., Mallet, J., Mace, G. M. (2004). Taxonomic inflation: Its influence on macroecology and conservation.(9), 464–469.
    Open DOISearch in Google Scholar
  20. Kelly, R. P., Sarkar, I. N., Eernisse, J. D., Alle, D. R. (2007). DNA barcoding using chitons (genus)., 177–183.
    Open DOISearch in Google Scholar
  21. Kotze, J. D., Brandmayr, P., Casale, A., Dauffy-Richard, E., Dekoninck, W., Koivula, M. J., Lövei, G. L., Mossakowski, D., Noordijk, J., Paarmann, V., Pizzolotto, R., Saska, P., Schwerk, A., Serrano, J., Szyszko, J., Taboada, A., Turin, H., Venn, S., Vermeulen, R., Zetto, T. (2011) Forty years of carabid beetle research in Europe — from taxonomy, biology, ecology and population studies to bioindication, habitat assessment and conservation., 55–148.
    Open DOISearch in Google Scholar
  22. Krishtalka, L., Peterson, T. D., Viegalis, J. B., Wiley, E. (2000). The green internet: A tool for conservation science. In:(pp. 143–164). (J. Levitt, ed.). Island Press, Washington, DC.
    Search in Google Scholar
  23. Kubista, M., Andrade, J. M., Bengtsson, M., Forootan, A., Jonák, J., Lind, K., Sindelka, R., Sjöback, R., Sjögreen, B., Strömbom, L., Ståhlberg, A., Zoric, N. (2006). The real-time polymerase chain reaction.(2–3), 95–125.
    Open DOISearch in Google Scholar
  24. Lemey, P., Salemi, M., Vandamme, A. M. (2009).. New York: Cambridge University Press. 723 pp.
    Open DOISearch in Google Scholar
  25. Lindahl, T. (1993). Instability and decay of the primary structure of DNA.,, 709–715.
    Open DOISearch in Google Scholar
  26. Lueders, T., Friedrich, M. W. (2003). Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA andA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts.(1), 320–326.
    Open DOISearch in Google Scholar
  27. Maddison, D. R., Baker, M. D., Ober, K. A. (1999). Phylogeny af carabid beetles as inferred 18S ribosomalDNA(Coleoptera: Carabidae)., 103–138.
    Open DOISearch in Google Scholar
  28. Maddison, D. R., Moore, W., Baker, M. D., Ellis, T. M., Ober, K. A., Cannone, J. J., Gutell, R. R. (2009). Monophyly of terrestrial adephagan beetles as indicated by three nuclear genes (Coleoptera: Carabidae and Trachypachidae).,(1), 43–62.
    Open DOISearch in Google Scholar
  29. Mandrioli, M. (2008). Insect collections and DNA analyses: How to manage collections?,, 193–199.
    Open DOISearch in Google Scholar
  30. Margam, V. M., Gachomo, E. W., Shukle, J. H., Ariyo, O. O., Seufferheld, M. J., Kotchoni, S. O. (2010). A simplified arthropod genomic-DNA extraction protocol for polymerase chain reaction (PCR)-based specimen identification through barcoding.,, 3631–3635.
    Open DOISearch in Google Scholar
  31. Merzendorfer, H. (2013). Chitin synthesis inhibitors: Old molecules and new developments., 121–138
    Open DOISearch in Google Scholar
  32. Morlais, I., Severson, D. W. (2002). Complete mitochondrial DNA sequence and amino acid analysis of the cytochrome c oxidase subunit I (COI) from., 123–127.
    Open DOISearch in Google Scholar
  33. Muller, C. J., Beheregaray, L. B. (2010). Paleo island-affinities revisited biogeography and systematics of the Indo-Pacific genusFabricus (Lepidoptera: Nymphalidae).,, 314–326.
    Open DOISearch in Google Scholar
  34. Raupach, M. J., Astrin, J. J., Hanning, K., Peters K. M., Stoeckle, M. Y., Wägele, J. W. (2010). Molecular species identification of Central European ground beetles (Coleoptera: Carabidae) using nuclear rDNA expansion segments and DNA barcodes., 26.
    Open DOISearch in Google Scholar
  35. Rohland, N., Siedel, H., Hofreiter, M. (2004). Nondestructive DNA extraction method for mitochondrial DNA analyses of museum specimens.,(5), 814–821.
    Open DOISearch in Google Scholar
  36. Sipos, R., Szekely, A. J., Palatinszky, M., Revesz, S., Marialigeti, K., Nikolausz, M. (2007). Effect of primer mismatch, annealing temperature and PCR cycle number on 16S rRNA gene-targetting bacterial community analysis.,, 341–350.
    Open DOISearch in Google Scholar
  37. Suarez, A. V., Tsutsui, N. D. (2004). The value of museum collections for research and society.,(1), 66–74.
    Open DOISearch in Google Scholar
  38. Sun, Y., Li, Q., Kong, L., Zheng, X. (2012). DNA barcoding of Caenogastropoda along coast of China based on the COI gene.,, 209–218.
    Open DOISearch in Google Scholar
  39. Thomsen, P. F., Elias, S., Gilbert, M. T. P., Haile, J., Munch, K., Kuzmina, S., Froese, G. D., Sher, A., Holdaway, N. R., Willerslev, E. (2009). Non-destructive sampling of ancient insect DNA.(4), e5048.
    Open DOISearch in Google Scholar
  40. VanGuilder, H. D., Vrana, K. E., Freeman, W. M. (2008). Twenty-five years of quantitative PCR for gene expression analysis.(5), 619–626.
    Open DOISearch in Google Scholar
  41. VanHardenbroek, M., Grocke, D. R., Sauer, P. E., Elias, S. A. (2012). North American transect of stable hydrogen and oxygen isotopes in water beetles from a museum collection.,(2), 461–470.
    Open DOISearch in Google Scholar
  42. Wandeler, P., Hoeck, P. E. A., Keller, L. F. (2007). Back to the future: Museum specimens in population genetics...(12), 634–642.
    Open DOISearch in Google Scholar
  43. Watts, P. C., Thompson, J. D., Allen, K. A., Kemp, J. S. (2007). How useful is DNA extracted from the legs of archived insects for microsatellite-based population genetic analyses?,, 195–198.
    Open DOISearch in Google Scholar
  44. Wiley, E. O., Lieberman, B. S. (2011).New Jersey: John Wiley & Sons Inc. 406 pp.
    Open DOISearch in Google Scholar
  45. Willerslev, E., Cooper, A. (2005). Ancient DNA., 3–16.
    Search in Google Scholar
  46. Willerslev, E., Hansen, A. J., Poinar, H. N. (2004). Isolation of nucleic acids and cultures from ice and permafrost., 141–147.
    Open DOISearch in Google Scholar
  47. Winker, K. (2004). Natural history museums in a postbiodiversity era.,(5), 455–459.
    Open DOISearch in Google Scholar
  48. Wong, M. L., Medrano, J. F. (2005). Real-time PCR for mRNA quantitation.(1), 75–85.
    Open DOISearch in Google Scholar
  49. Yuan, J. S, Donglin, W., Stewart, C. N. (2008). Statistical methods for efficiency adjusted real-time PCR quantification.,(1), 112–123.
    Open DOISearch in Google Scholar
  50. Yuan, J. S, Reed, A., Chen, F., Stewart C. N. (2006). Statistical analysis of real-time PCR data., 85.
    Open DOISearch in Google Scholar
DOI: https://doi.org/10.1515/prolas-2015-0003 | Journal eISSN: 2255-890X (formerly 1407-009X) | Journal ISSN: 1407-009X
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Language: English, Latvian
Page range: 33 - 37
Submitted on: Jan 5, 2015
Published on: Jul 14, 2015
Published by: Latvian Academy of Sciences
In partnership with: Paradigm Publishing Services
Keywords:
rtPCR conditions,
COI gene,
mtDNA,
Notiophilus
Related subjects:
Mathematics,
General mathematics

© 2015 Inese Kokina, Arvīds Barševskis, Rita Latvele, Kristīna Aksjuta, Inese Jahundoviča, published by Latvian Academy of Sciences
This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

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